Rh1CG334100

Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
60885076 .. 60885519
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG334100.1

Sequence Viewer

Length: 444 bp
ATGTGGGATTTACTGATACCTTCTAATGTGGTTAGTATGCCCTTGTCTTTTATTATCTTCTATAGACAGCCTCACCCACAGCTTTTGGGGAAGGAGCTGGCAATTTTTGCAGTCAGATTGAGCAGACAAAGGCATAGAATTTCTCGGGTGGAGATAACGGGAAAGTTTGCTGGTCCTGTAGGAAATTACAATGCTCTTTTTGTTGCATATCCTAGAATCAAATGGCCGCAAATTGCTAAAGAGTTTGTAACATCTCTTGGAGTGTGCTTTAATCCTTATGTCACTGAGATATCTTTCCTGTGCTTATACAGTCTATTCAGTAAAACATTTTATCAAGTTTATTGGGTTCTGAATTTTAAACTCCATATCAATTTTAGATTGTCATTTAAGTGTGATGACCAGGGGATAGCTGTCAGACAGGATAGCTCTGCTATGCATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

147

Amino Acids

17.08

Weight (kDa)

9.67

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 224
AcsI RAATTY 2 cut(s) 138, 352
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 4 cut(s) 82, 97, 410, 426
AluI AGCT 4 cut(s) 82, 97, 410, 426
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 1 cut(s) 224
ApoI RAATTY 2 cut(s) 138, 352
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 401
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 2 cut(s) 61, 177
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 400
BseMII CTCAG 1 cut(s) 276
BshFI GGCC 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 144
BsnI GGCC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 144
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 400
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 99, 438
BstDEI CTNAG 1 cut(s) 285
BstMWI GCNNNNNNNGC 2 cut(s) 107, 437
BstNI CCWGG 1 cut(s) 401
BstNSI RCATGY 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 399
BstSFI CTRYAG 2 cut(s) 61, 177
BsuRI GGCC 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 99, 438
Cfr13I GGNCC 1 cut(s) 173
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 1 cut(s) 437
CviJI RGCY 6 cut(s) 70, 82, 97, 226, 410, 426
CviKI_1 RGCY 6 cut(s) 70, 82, 97, 226, 410, 426
DdeI CTNAG 1 cut(s) 285
DraI TTTAAA 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 224
Eco32I GATATC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 399
EcoRV GATATC 1 cut(s) 291
EcoT22I ATGCAT 1 cut(s) 438
FaeI CATG 1 cut(s) 440
FaiI YATR 9 cut(s) 38, 63, 135, 208, 279, 307, 366, 434, 438
FatI CATG 1 cut(s) 436
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 227
HaeIII GGCC 1 cut(s) 226
Hin1II CATG 1 cut(s) 440
HinfI GANTC 1 cut(s) 216
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 3 cut(s) 116, 351, 416
HpyAV CCTTC 2 cut(s) 30, 85
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 110, 206, 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 437
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 1 cut(s) 440
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 7 cut(s) 83, 156, 189, 311, 386, 404, 413
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 247, 280
MboII GAAGA 1 cut(s) 49
MluCI AATT 6 cut(s) 102, 138, 184, 231, 352, 370
MnlI CCTC 1 cut(s) 81
Mph1103I ATGCAT 1 cut(s) 438
MseI TTAA 4 cut(s) 270, 357, 387, 442
MslI CAYNNNNRTG 1 cut(s) 388
MspR9I CCNGG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 2 cut(s) 107, 437
NlaIII CATG 1 cut(s) 440
NmuCI GTSAC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 1 cut(s) 440
PaeI GCATGC 1 cut(s) 440
PfeI GAWTC 1 cut(s) 216
PkrI GCNGC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspPI GGNCC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 388
SaqAI TTAA 4 cut(s) 270, 357, 387, 442
SatI GCNGC 1 cut(s) 227
Sau96I GGNCC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 401
SetI ASST 5 cut(s) 22, 84, 99, 412, 428
SfcI CTRYAG 2 cut(s) 61, 177
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 388
SphI GCATGC 1 cut(s) 440
Sse9I AATT 6 cut(s) 102, 138, 184, 231, 352, 370
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 311
TasI AATT 6 cut(s) 102, 138, 184, 231, 352, 370
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 4 cut(s) 270, 357, 387, 442
Tru9I TTAA 4 cut(s) 270, 357, 387, 442
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspRI CASTG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 138, 352
XceI RCATGY 1 cut(s) 440
XspI CTAG 1 cut(s) 213
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.