Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000912

Physical Location & Seq

Genomic Coordinates Forward (+)

40403426 .. 40403913

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG292100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCTAAGGACAATGCTCATATTCCTATGGGGTCTCGTACTCATGGCCAGCCTAATGCACCCACAACTGTGAGGAAAGAAATGGCAACTTTTGCTGTGAGATTAAGGAGAGAGAGGAAAGAGATATCTTCGGTGGCGATAATGGGGAAATTTTTTGGTGCTGTTGGAAATTACAACGCTCATCTTGTTGCATATCCTAATATTAATTGGCCCCAAGTTGCTGTAGAGTTTGTAGCATCTCTTGGATTGAATTTTCATCCCTATGTTACTTTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 ko01110 ko01130 map00230 map00250 map01100 map01110 map01130

Pfam Domains

Protein Families

ASL_C Lyase_1

Protein Analysis

92

Amino Acids

10.24

Weight (kDa)

10.2

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lyase_1	PF00206	2 - 74	7.8e-09	Lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36280 AT1G36280 AT4G18440
fragaria_vesca	FvH4_1g28541 FvH4_5g04980 FvH4_5g04980 FvH4_5g04980 FvH4_5g04980 FvH4_5g04980 FvH4_5g11350 FvH4_5g14130 FvH4_7g08523
malus_domestica	MD04G1043000.v1.1 MD04G1043400.v1.1
prunus_persica	Prupe.1G197600_v2.0.a1 Prupe.7G059800_v2.0.a1
pyrus_communis	pycom04g03780
rosa_chinensis	RchiOBHm_Chr5g0043741 RchiOBHm_Chr5g0043751 RchiOBHm_Chr5g0043781 RchiOBHm_Chr5g0043801 RchiOBHm_Chr7g0186531 RchiOBHm_Chr7g0194071
rosa_laevigata	RLG00000004220 RLG00000004837 RLG00000020409 RLG00000034209 RLG00000034213
rosa_multiflora	Rmu_co8476955.1_g000001 Rmu_sc0000645.1_g000025 Rmu_sc0003468.1_g000006 Rmu_sc0009433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00037270 Rroxscaffold_1G00037280 Rroxscaffold_1G00037310 Rroxscaffold_3G00261570
rosa_rugosa	Rorug06G0474900 Rorug06G0475000 Rorug07G0013500 Rorug07G0013600 Rorug07G0013600 Rorug07G0013600
rosa_samantha	Rh1BG320200 Rh1CG334100 Rh1DG350800 Rh5AG292100 Rh5AG292300 Rh5BG299700 Rh5BG300000 Rh5BG300400 Rh5CG328300 Rh5DG308900 Rh5DG309400 Rh7AG066200 Rh7AG140700 Rh7BG082100 Rh7BG141400 Rh7CG081600 Rh7CG144800 Rh7DG082500 Rh7DG142100
rosa_wichuraiana	Rw7G006850 Rw7G006860 Rw7G007080 Rw7G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	149, 250
AfaI	GTAC	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	250
AleI	CACNNNNGTG	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	39
AoxI	GGCC	2 cut(s)	46, 209
ApoI	RAATTY	2 cut(s)	149, 250
AseI	ATTAAT	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	212
BmsI	GCATC	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	39
BseGI	GGATG	1 cut(s)	256
BshFI	GGCC	2 cut(s)	48, 211
BsmAI	GTCTC	1 cut(s)	39
BsnI	GGCC	2 cut(s)	48, 211
Bso31I	GGTCTC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	48, 211
BspLI	GGNNCC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	48, 211
BtsCI	GGATG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	4 cut(s)	5, 48, 52, 211
CviKI_1	RGCY	4 cut(s)	5, 48, 52, 211
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	6
DraI	TTTAAA	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	126
FaeI	CATG	1 cut(s)	47
FaiI	YATR	5 cut(s)	21, 29, 45, 193, 264
FatI	CATG	1 cut(s)	43
FokI	GGATG	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	48, 211
Hin1II	CATG	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	59, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	47
LpnPI	CCDG	1 cut(s)	62
LweI	GCATC	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	120
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	4 cut(s)	149, 169, 205, 250
MluNI	TGGCCA	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	66, 108
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	3 cut(s)	104, 204, 272
MslI	CAYNNNNRTG	2 cut(s)	68, 261
Msp20I	TGGCCA	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	212
OliI	CACNNNNGTG	1 cut(s)	68
PshBI	ATTAAT	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	210
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	2 cut(s)	68, 261
SaqAI	TTAA	3 cut(s)	104, 204, 272
Sau96I	GGNCC	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	222
SgeI	CNNG	6 cut(s)	48, 56, 61, 197, 227, 254
SmiMI	CAYNNNNRTG	2 cut(s)	68, 261
Sse9I	AATT	4 cut(s)	149, 169, 205, 250
SspI	AATATT	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	70
TasI	AATT	4 cut(s)	149, 169, 205, 250
Tru1I	TTAA	3 cut(s)	104, 204, 272
Tru9I	TTAA	3 cut(s)	104, 204, 272
TspDTI	ATGAA	1 cut(s)	245
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	2 cut(s)	149, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.