Rh5BG300000

Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
38691050 .. 38699263
8214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG300000.1

Sequence Viewer

Length: 429 bp
ATGCTCTCCACTGGTACAAAGAGAGTTCTTAAAAGATATTACTTCACACGCCATATTCTACCAATTTCTATGGTGCTTGAATTTTTCCATTTTGCTTGCACATCTGAGGATATCAACAATCTTGCCCATGCATTAATGCTAGAAGGAGCCATGAACAATGTCGTACTCCCTTTCATGGATGATTTGATTCAGGCTCTATGTAACATGGCCAAGGACAATGCTCATATTCCTAGGGGGTCTCGTACAATGCTCATATTTAGGCTTCTTGCATGTACTGAAATTCCTTTATCCTTGCTTGATGCACCAACTGTGGGGAAAGAAATGGCAACTTTTGCTGTGAGATTAGGAGGGAAAGTTTCTGGTGCTTTTGGAAATTACAACACTCATCTTGTTGCATATCCTAATATTAATTGGCCCCAAGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

15.83

Weight (kDa)

8.52

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lyase_1 PF00206 27 - 84 1.8e-07 Lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 2 cut(s) 80, 279
AfaI GTAC 4 cut(s) 16, 165, 244, 274
AfiI CCNNNNNNNGG 2 cut(s) 175, 311
AgsI TTSAA 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 243
AoxI GGCC 2 cut(s) 207, 413
ApoI RAATTY 2 cut(s) 80, 279
AseI ATTAAT 2 cut(s) 134, 408
AspA2I CCTAGG 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 414
AvrII CCTAGG 1 cut(s) 230
BalI TGGCCA 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 2 cut(s) 140, 231
BlnI CCTAGG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 2 cut(s) 148, 416
BmsI GCATC 1 cut(s) 289
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 210, 230
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 311
Bse1I ACTGG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 210, 230
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 175, 311
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 16
BshFI GGCC 2 cut(s) 209, 415
BslI CCNNNNNNNGG 2 cut(s) 175, 311
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 2 cut(s) 209, 415
Bso31I GGTCTC 1 cut(s) 243
BspANI GGCC 2 cut(s) 209, 415
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 148, 416
BspTNI GGTCTC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 210, 230
BssT1I CCWWGG 2 cut(s) 210, 230
Bst4CI ACNGT 1 cut(s) 310
BstAPI GCANNNNNTGC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 273
BsuRI GGCC 2 cut(s) 209, 415
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 414
Csp6I GTAC 4 cut(s) 15, 164, 243, 273
CviAII CATG 5 cut(s) 128, 151, 175, 205, 270
CviJI RGCY 5 cut(s) 149, 194, 209, 262, 415
CviKI_1 RGCY 5 cut(s) 149, 194, 209, 262, 415
CviQI GTAC 4 cut(s) 15, 164, 243, 273
DdeI CTNAG 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 210, 230
Eco31I GGTCTC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 112
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 210, 230
EcoT22I ATGCAT 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 210, 230
FaeI CATG 5 cut(s) 131, 154, 178, 208, 273
FatI CATG 5 cut(s) 127, 150, 174, 204, 269
FokI GGATG 1 cut(s) 191
FspBI CTAG 2 cut(s) 140, 231
HaeIII GGCC 2 cut(s) 209, 415
Hin1II CATG 5 cut(s) 131, 154, 178, 208, 273
HinfI GANTC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 5 cut(s) 99, 131, 269, 302, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 5 cut(s) 131, 154, 178, 208, 273
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 2 cut(s) 176, 345
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 140, 231
MaeIII GTNAC 1 cut(s) 200
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 5 cut(s) 63, 80, 279, 373, 409
MluNI TGGCCA 1 cut(s) 209
MnlI CCTC 2 cut(s) 100, 341
Mox20I TGGCCA 1 cut(s) 209
Mph1103I ATGCAT 1 cut(s) 133
MscI TGGCCA 1 cut(s) 209
MseI TTAA 4 cut(s) 30, 134, 408, 427
Msp20I TGGCCA 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 332
NlaIII CATG 5 cut(s) 131, 154, 178, 208, 273
NlaIV GGNNCC 2 cut(s) 148, 416
NsiI ATGCAT 1 cut(s) 133
NspI RCATGY 1 cut(s) 273
PfeI GAWTC 1 cut(s) 187
PshBI ATTAAT 2 cut(s) 134, 408
PspN4I GGNNCC 2 cut(s) 148, 416
PspPI GGNCC 1 cut(s) 414
RsaI GTAC 4 cut(s) 16, 165, 244, 274
RsaNI GTAC 4 cut(s) 15, 164, 243, 273
SaqAI TTAA 4 cut(s) 30, 134, 408, 427
Sau96I GGNCC 1 cut(s) 414
SfaNI GCATC 1 cut(s) 289
Sse9I AATT 5 cut(s) 63, 80, 279, 373, 409
SspI AATATT 1 cut(s) 406
SspMI CTAG 2 cut(s) 140, 231
StyI CCWWGG 2 cut(s) 210, 230
TaaI ACNGT 1 cut(s) 310
TasI AATT 5 cut(s) 63, 80, 279, 373, 409
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 4 cut(s) 30, 134, 408, 427
Tru9I TTAA 4 cut(s) 30, 134, 408, 427
TscAI CASTG 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 163, 167
TspRI CASTG 1 cut(s) 16
VspI ATTAAT 2 cut(s) 134, 408
XapI RAATTY 2 cut(s) 80, 279
XceI RCATGY 1 cut(s) 273
XmaJI CCTAGG 1 cut(s) 230
XspI CTAG 2 cut(s) 140, 231
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.