Rmu_co8476955.1_g000001

Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8476955.1
Physical Location & Seq
Forward (+)
1 .. 2070
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8476955.1_g000001.1.cds

Sequence Viewer

Length: 1822 bp
cgagcatccggacttgacggcgttgtctccgttggacggccggtatagcggtgtagtgaaggaattggctccttatttgagtgagtatggcctcatctactaccgtgttcttgttgagattaaatggttgctgaagctttctcaaatccctgaagttatagaggtgccgaatttcagtgaagaagctcagtcttacttgcaagggattattgatgggtttagcattaatgatgcaagagaggtaaagaggattgagaagaccactaaccacgatgtaaaagcggtggagtactttttgaagcagagaagcagttcacatccagagatagctaaggtgcttgagttttatcattttgcttgcacgtctgaggatatcaacaatattgcacacgcattgatgttgacagagtctgtcaacaatgtcctgcttcctgtcatggacgatttgattcgagcaatatgtgacatggcaaaagagcatgctgccattcccatgctttcacgtactcatggacagacggcctcacctacaactttggggaaggaaatggctgttttcgctgtcaggttaagcacacagaggcaggaagtttctcaagtggcaataatggggaagcttgctggtgctgtaggaaattacaatgctcatatggttgcatatcctaatattgattggcccttagttgctgaagagtttgtcacatctctcggtgtaagtttcaatccatatgttacccagatcgagacacatgactatatggcaaaactttttcatgcttatatcagattcaataatatcttgatcgactttgactgtgatatatggcggtacatatctttgggatactttaagcagacaacaaaagctggtgaaattgggtcttcaacaatgcctcacaaagtaaaccccattgattttgagaatagtgaaggtaatcttggcatggctagtggagttttttcctatctgagtgataagttgcctaaatcacgtttgcagcgtgacttgactgattctactgttctgaggaacatgggtgttggattcggccattctcttcttgcctacagaagcacgctgcggggaatatcaaagcttcaggttaatgaaggtcgcataagtgaagatttgaatcactcttgggaggtgcttgccgaaccaatacaaactgttatgcgaagatatgatgttccagagccatatgagaagctgaaggtacttacaagagggagaacagttactgcagaaagtataaaagagtttgtcaaaggcttggaattacctgaagaaccaaagaacattttatcaaaattgacaccacatagctatgttggatctgctgttgttttggcgaagacagtagatgtggccgttagagccaccataaaagacaccaatgttcctgctgagaaggtgaagatggtgtttggtagttcttcttgtgaactcgagctttcaagtttgctggctttgtcaccattggatggccggtactggggtaaagtaaaggacttggctccttatatgagtgaatatggtttaatctacttccgtgttatagttgagatcaaatggttgctatggctttcacaaattcctgaagtgatagaggtaaccagctttggggaaagtgctcagtcgtttttgcaagaaataattgatgggtttagcatcaatgacgcactagagataaaggagattgagaaagtgacaaaccatgacgtaaaagcggtggagtattttttgaaacagagatgcaaatcacacccagagatagcaaaggttaaaactcacttttgtggttttcagatgctggactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

606

Amino Acids

68.3

Weight (kDa)

5.73

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 164
AccB7I CCANNNNNTGG 1 cut(s) 1485
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 5 cut(s) 49, 282, 827, 1082, 1731
AclWI GGATC 1 cut(s) 1343
AcoI YGGCCR 4 cut(s) 38, 1049, 1369, 1487
AcsI RAATTY 2 cut(s) 170, 1594
AcuI CTGAAG 7 cut(s) 153, 172, 709, 1083, 1233, 1306, 1621
AfaI GTAC 5 cut(s) 291, 506, 831, 1219, 1494
AfiI CCNNNNNNNGG 4 cut(s) 36, 1485, 1496, 1624
AgsI TTSAA 7 cut(s) 299, 722, 791, 886, 1133, 1459, 1748
AjiI CACGTC 1 cut(s) 364
AjuI GAANNNNNNNTTGG 2 cut(s) 922, 954
AleI CACNNNNGTG 1 cut(s) 1798
Alw21I GWGCWC 1 cut(s) 1637
Alw26I GTCTC 2 cut(s) 31, 738
AlwI GGATC 1 cut(s) 1343
AlwNI CAGNNNCTG 3 cut(s) 411, 1242, 1814
Ama87I CYCGRG 1 cut(s) 1449
Aor13HI TCCGGA 1 cut(s) 8
AoxI GGCC 7 cut(s) 38, 89, 520, 675, 1049, 1369, 1487
ApeKI GCWGC 3 cut(s) 483, 998, 1079
ApoI RAATTY 2 cut(s) 170, 1594
AseI ATTAAT 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 676
AsuHPI GGTGA 4 cut(s) 517, 882, 1427, 1468
AvaI CYCGRG 1 cut(s) 1449
BaeI ACNNNNGTAYC 2 cut(s) 1484, 1517
BanI GGYRCC 1 cut(s) 164
BbsI GAAGAC 3 cut(s) 264, 874, 1362
Bbv12I GWGCWC 1 cut(s) 1637
BbvI GCAGC 3 cut(s) 470, 1010, 1066
BccI CCATC 4 cut(s) 207, 1415, 1479, 1656
BceAI ACGGC 4 cut(s) 34, 53, 535, 1356
BciVI GTATCC 1 cut(s) 837
BcoDI GTCTC 2 cut(s) 31, 738
BfaI CTAG 2 cut(s) 949, 1686
BfmI CTRYAG 3 cut(s) 628, 1067, 1243
BfuI GTATCC 1 cut(s) 837
BisI GCNGC 3 cut(s) 484, 999, 1080
BlsI GCNGC 3 cut(s) 485, 1000, 1081
BmcAI AGTACT 1 cut(s) 291
BmeT110I CYCGRG 1 cut(s) 1449
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 676
BmiI GGNNCC 3 cut(s) 70, 166, 1519
BmrI ACTGGG 1 cut(s) 1505
BmsI GCATC 5 cut(s) 14, 221, 1681, 1746, 1801
BmuI ACTGGG 1 cut(s) 1505
BpiI GAAGAC 3 cut(s) 264, 874, 1362
Bpu10I CCTNAGC 1 cut(s) 331
BpuEI CTTGAG 2 cut(s) 360, 580
BsaAI YACGTR 1 cut(s) 504
BsaBI GATNNNNATC 2 cut(s) 1132, 1760
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 1485, 1496, 1624
Bse118I RCCGGY 2 cut(s) 40, 1489
Bse1I ACTGG 1 cut(s) 1500
Bse8I GATNNNNATC 2 cut(s) 1132, 1760
BseAI TCCGGA 1 cut(s) 8
BseGI GGATG 3 cut(s) 5, 317, 1490
BseJI GATNNNNATC 2 cut(s) 1132, 1760
BseLI CCNNNNNNNGG 4 cut(s) 36, 1485, 1496, 1624
BseMII CTCAG 6 cut(s) 201, 358, 960, 1017, 1399, 1650
BseNI ACTGG 1 cut(s) 1500
BseX3I CGGCCG 1 cut(s) 38
BseXI GCAGC 3 cut(s) 470, 1010, 1066
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 7 cut(s) 40, 91, 522, 677, 1051, 1371, 1489
BshNI GGYRCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 1637
BsiHKCI CYCGRG 1 cut(s) 1449
BsiSI CCGG 3 cut(s) 9, 41, 1490
BslI CCNNNNNNNGG 4 cut(s) 36, 1485, 1496, 1624
BsmAI GTCTC 2 cut(s) 31, 738
BsnI GGCC 7 cut(s) 40, 91, 522, 677, 1051, 1371, 1489
BsoBI CYCGRG 1 cut(s) 1449
Bsp1286I GDGCHC 1 cut(s) 1637
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 4 cut(s) 739, 802, 1335, 1567
BspACI CCGC 5 cut(s) 49, 282, 827, 1082, 1731
BspANI GGCC 7 cut(s) 40, 91, 522, 677, 1051, 1371, 1489
BspCNI CTCAG 6 cut(s) 200, 359, 961, 1018, 1400, 1649
BspEI TCCGGA 1 cut(s) 8
BspLI GGNNCC 3 cut(s) 70, 166, 1519
BspMAI CTGCAG 1 cut(s) 1247
BspPI GGATC 1 cut(s) 1343
BspT107I GGYRCC 1 cut(s) 164
BsrFI RCCGGY 2 cut(s) 40, 1489
BsrI ACTGG 1 cut(s) 1500
BssAI RCCGGY 2 cut(s) 40, 1489
BssMI GATC 4 cut(s) 739, 802, 1335, 1567
Bst4CI ACNGT 6 cut(s) 105, 816, 1022, 1172, 1238, 1361
Bst6I CTCTTC 2 cut(s) 685, 1063
BstBAI YACGTR 1 cut(s) 504
BstC8I GCNNGC 6 cut(s) 359, 481, 619, 1077, 1153, 1468
BstDEI CTNAG 8 cut(s) 187, 331, 367, 680, 969, 1026, 1408, 1636
BstEII GGTNACC 1 cut(s) 1613
BstF5I GGATG 3 cut(s) 5, 317, 1490
BstKTI GATC 4 cut(s) 742, 805, 1338, 1570
BstMAI GTCTC 2 cut(s) 31, 738
BstMBI GATC 4 cut(s) 739, 802, 1335, 1567
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 3 cut(s) 46, 558, 1377
BstNSI RCATGY 1 cut(s) 483
BstPI GGTNACC 1 cut(s) 1613
BstSFI CTRYAG 3 cut(s) 628, 1067, 1243
BstV1I GCAGC 3 cut(s) 470, 1010, 1066
BstV2I GAAGAC 3 cut(s) 264, 874, 1362
BstX2I RGATCY 1 cut(s) 1335
BstYI RGATCY 1 cut(s) 1335
BstZI CGGCCG 1 cut(s) 38
BsuI GTATCC 1 cut(s) 837
BsuRI GGCC 7 cut(s) 40, 91, 522, 677, 1051, 1371, 1489
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 3 cut(s) 5, 317, 1490
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 6 cut(s) 359, 481, 619, 1077, 1153, 1468
CaiI CAGNNNCTG 3 cut(s) 411, 1242, 1814
Cfr10I RCCGGY 2 cut(s) 40, 1489
Cfr13I GGNCC 1 cut(s) 676
CseI GACGC 1 cut(s) 1689
Csp6I GTAC 5 cut(s) 290, 505, 830, 1218, 1493
CviQI GTAC 5 cut(s) 290, 505, 830, 1218, 1493
DdeI CTNAG 8 cut(s) 187, 331, 367, 680, 969, 1026, 1408, 1636
DpnI GATC 4 cut(s) 741, 804, 1337, 1569
DpnII GATC 4 cut(s) 739, 802, 1335, 1567
DrdI GACNNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 1 cut(s) 23
EaeI YGGCCR 4 cut(s) 38, 1049, 1369, 1487
EagI CGGCCG 1 cut(s) 38
Eam1104I CTCTTC 2 cut(s) 685, 1063
EarI CTCTTC 2 cut(s) 685, 1063
EclXI CGGCCG 1 cut(s) 38
Eco32I GATATC 1 cut(s) 374
Eco52I CGGCCG 1 cut(s) 38
Eco57I CTGAAG 7 cut(s) 153, 172, 709, 1083, 1233, 1306, 1621
Eco88I CYCGRG 1 cut(s) 1449
Eco91I GGTNACC 1 cut(s) 1613
EcoO65I GGTNACC 1 cut(s) 1613
EcoRV GATATC 1 cut(s) 374
FalI AAGNNNNNCTT 2 cut(s) 922, 954
FauI CCCGC 1 cut(s) 1075
FauNDI CATATG 3 cut(s) 649, 728, 1202
Fnu4HI GCNGC 3 cut(s) 484, 999, 1080
FokI GGATG 2 cut(s) 304, 1497
Fsp4HI GCNGC 3 cut(s) 484, 999, 1080
FspBI CTAG 2 cut(s) 949, 1686
GluI GCNGC 3 cut(s) 484, 999, 1080
HaeIII GGCC 7 cut(s) 40, 91, 522, 677, 1051, 1371, 1489
HapII CCGG 3 cut(s) 9, 41, 1490
HgaI GACGC 1 cut(s) 1689
HincII GTYRAC 2 cut(s) 403, 416
HindII GTYRAC 2 cut(s) 403, 416
HindIII AAGCTT 3 cut(s) 135, 615, 1095
HinfI GANTC 6 cut(s) 408, 449, 787, 1014, 1045, 1133
HpaII CCGG 3 cut(s) 9, 41, 1490
HphI GGTGA 4 cut(s) 517, 882, 1427, 1468
Hpy166II GTNNAC 5 cut(s) 315, 403, 416, 905, 1446
Hpy188I TCNGA 5 cut(s) 368, 786, 970, 1027, 1810
Hpy188III TCNNGA 6 cut(s) 9, 321, 743, 800, 1194, 1599
Hpy8I GTNNAC 5 cut(s) 315, 403, 416, 905, 1446
HpyAV CCTTC 6 cut(s) 53, 536, 924, 1104, 1208, 1406
HpyCH4III ACNGT 6 cut(s) 105, 816, 1022, 1172, 1238, 1361
HpyCH4IV ACGT 4 cut(s) 363, 503, 992, 1723
HpyCH4V TGCA 9 cut(s) 200, 234, 361, 387, 657, 998, 1245, 1649, 1759
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 558, 1377
HpyF3I CTNAG 8 cut(s) 187, 331, 367, 680, 969, 1026, 1408, 1636
HpySE526I ACGT 4 cut(s) 363, 503, 992, 1723
Kpn2I TCCGGA 1 cut(s) 8
Kzo9I GATC 4 cut(s) 739, 802, 1335, 1567
LmnI GCTCC 2 cut(s) 74, 1523
Lsp1109I GCAGC 3 cut(s) 470, 1010, 1066
LweI GCATC 5 cut(s) 14, 221, 1681, 1746, 1801
MaeI CTAG 2 cut(s) 949, 1686
MaeII ACGT 4 cut(s) 363, 503, 992, 1723
MaeIII GTNAC 8 cut(s) 462, 698, 731, 1002, 1238, 1474, 1613, 1709
MalI GATC 4 cut(s) 741, 804, 1337, 1569
MboI GATC 4 cut(s) 739, 802, 1335, 1567
MflI RGATCY 1 cut(s) 1335
MhlI GDGCHC 1 cut(s) 1637
MluCI AATT 8 cut(s) 63, 170, 635, 874, 1278, 1311, 1594, 1657
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 3 cut(s) 13, 1022, 1313
MroI TCCGGA 1 cut(s) 8
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 7 cut(s) 121, 226, 570, 850, 1105, 1542, 1786
MslI CAYNNNNRTG 3 cut(s) 492, 1327, 1798
MspI CCGG 3 cut(s) 9, 41, 1490
MwoI GCNNNNNNNGC 3 cut(s) 46, 558, 1377
NdeI CATATG 3 cut(s) 649, 728, 1202
NdeII GATC 4 cut(s) 739, 802, 1335, 1567
NlaIV GGNNCC 3 cut(s) 70, 166, 1519
NmuCI GTSAC 5 cut(s) 462, 698, 1002, 1474, 1709
NspI RCATGY 1 cut(s) 483
OliI CACNNNNGTG 1 cut(s) 1798
PaeI GCATGC 1 cut(s) 483
PaeR7I CTCGAG 1 cut(s) 1449
PcsI WCGNNNNNNNCGW 1 cut(s) 998
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 5 cut(s) 449, 787, 1014, 1045, 1133
PflFI GACNNNGTC 1 cut(s) 407
PflMI CCANNNNNTGG 1 cut(s) 1485
PkrI GCNGC 3 cut(s) 485, 1000, 1081
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
Ppu21I YACGTR 1 cut(s) 504
PshBI ATTAAT 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 1613
PspN4I GGNNCC 3 cut(s) 70, 166, 1519
PspPI GGNCC 1 cut(s) 676
PspXI VCTCGAGB 1 cut(s) 1449
PstI CTGCAG 1 cut(s) 1247
PstNI CAGNNNCTG 3 cut(s) 411, 1242, 1814
PsuI RGATCY 1 cut(s) 1335
PsyI GACNNNGTC 1 cut(s) 407
RsaI GTAC 5 cut(s) 291, 506, 831, 1219, 1494
RsaNI GTAC 5 cut(s) 290, 505, 830, 1218, 1493
RseI CAYNNNNRTG 3 cut(s) 492, 1327, 1798
SaqAI TTAA 7 cut(s) 121, 226, 570, 850, 1105, 1542, 1786
SatI GCNGC 3 cut(s) 484, 999, 1080
Sau3AI GATC 4 cut(s) 739, 802, 1335, 1567
Sau96I GGNCC 1 cut(s) 676
ScaI AGTACT 1 cut(s) 291
SchI GAGTC 1 cut(s) 417
SduI GDGCHC 1 cut(s) 1637
SfaNI GCATC 5 cut(s) 14, 221, 1681, 1746, 1801
SfcI CTRYAG 3 cut(s) 628, 1067, 1243
Sfr274I CTCGAG 1 cut(s) 1449
SlaI CTCGAG 1 cut(s) 1449
SmiMI CAYNNNNRTG 3 cut(s) 492, 1327, 1798
SmlI CTYRAG 3 cut(s) 339, 595, 1449
SmoI CTYRAG 3 cut(s) 339, 595, 1449
SphI GCATGC 1 cut(s) 483
Sse9I AATT 8 cut(s) 63, 170, 635, 874, 1278, 1311, 1594, 1657
SsiI CCGC 5 cut(s) 49, 282, 827, 1082, 1731
SspI AATATT 2 cut(s) 383, 668
SspMI CTAG 2 cut(s) 949, 1686
TaaI ACNGT 6 cut(s) 105, 816, 1022, 1172, 1238, 1361
TaiI ACGT 4 cut(s) 366, 506, 995, 1726
TaqI TCGA 4 cut(s) 452, 742, 805, 1450
TasI AATT 8 cut(s) 63, 170, 635, 874, 1278, 1311, 1594, 1657
TatI WGTACW 1 cut(s) 289
TfiI GAWTC 5 cut(s) 449, 787, 1014, 1045, 1133
Tru1I TTAA 7 cut(s) 121, 226, 570, 850, 1105, 1542, 1786
Tru9I TTAA 7 cut(s) 121, 226, 570, 850, 1105, 1542, 1786
TscAI CASTG 1 cut(s) 182
TseFI GTSAC 5 cut(s) 462, 698, 1002, 1474, 1709
TseI GCWGC 3 cut(s) 483, 998, 1079
Tsp45I GTSAC 5 cut(s) 462, 698, 1002, 1474, 1709
TspDTI ATGAA 2 cut(s) 762, 1123
TspGWI ACGGA 2 cut(s) 19, 1542
TspRI CASTG 1 cut(s) 182
Tth111I GACNNNGTC 1 cut(s) 407
Van91I CCANNNNNTGG 1 cut(s) 1485
VspI ATTAAT 1 cut(s) 226
XapI RAATTY 2 cut(s) 170, 1594
XceI RCATGY 1 cut(s) 483
XhoI CTCGAG 1 cut(s) 1449
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 2 cut(s) 949, 1686
ZrmI AGTACT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.