Rroxscaffold_1G00037310

Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
54372765 .. 54373297
533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00037310.1

Sequence Viewer

Length: 324 bp
ATGTCATACTCCATCGATGATTTGATTCAGGCATTATGTAACATGGCTAAGGACAATGCTCATATTCCTATGGGGTCTCGTACTCATGGCCAGCCTAATGCACCCACAACTGTGAGGAAAGAAATGGCAACTTTTGCTGTGGGATTAAGGAGAGAAAGGAAAGAGATATCTTCGGTGGTGATAATGGGGAAATTTTTTGGTGCTGTTGGAAATTACAACGCTCATCTTGTTGCATATCCTGATATTAATTGGCCCCAAGTTGCTGAAGAGTTTGTAGCATCTCTTGGATTGAATTTTCATCCCTATGTTACTTTAAGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

11.88

Weight (kDa)

7.94

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lyase_1 PF00206 4 - 88 5.6e-11 Lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 2 cut(s) 191, 292
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 1 cut(s) 82
AgsI TTSAA 1 cut(s) 292
AleI CACNNNNGTG 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 81
AoxI GGCC 2 cut(s) 88, 251
ApoI RAATTY 2 cut(s) 191, 292
AseI ATTAAT 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 190
BalI TGGCCA 1 cut(s) 90
BccI CCATC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 254
BmsI GCATC 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 48
Bsa29I ATCGAT 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 81
BseCI ATCGAT 1 cut(s) 15
BseGI GGATG 1 cut(s) 298
BshFI GGCC 2 cut(s) 90, 253
BshVI ATCGAT 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 2 cut(s) 90, 253
Bso31I GGTCTC 1 cut(s) 81
BspANI GGCC 2 cut(s) 90, 253
BspDI ATCGAT 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 298
BstMAI GTCTC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 134
Bsu15I ATCGAT 1 cut(s) 15
BsuRI GGCC 2 cut(s) 90, 253
BsuTUI ATCGAT 1 cut(s) 15
BtsCI GGATG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 252
ClaI ATCGAT 1 cut(s) 15
Csp6I GTAC 1 cut(s) 81
CviAII CATG 2 cut(s) 43, 86
CviJI RGCY 4 cut(s) 47, 90, 94, 253
CviKI_1 RGCY 4 cut(s) 47, 90, 94, 253
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 1 cut(s) 48
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 168
FaeI CATG 2 cut(s) 46, 89
FaiI YATR 8 cut(s) 7, 37, 44, 63, 71, 87, 235, 306
FatI CATG 2 cut(s) 42, 85
FokI GGATG 1 cut(s) 285
HaeIII GGCC 2 cut(s) 90, 253
Hin1II CATG 2 cut(s) 46, 89
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 101, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 2 cut(s) 46, 89
LpnPI CCDG 3 cut(s) 14, 104, 252
LweI GCATC 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 38, 307
MboII GAAGA 2 cut(s) 162, 278
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 4 cut(s) 191, 211, 247, 292
MluNI TGGCCA 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 1 cut(s) 108
Mox20I TGGCCA 1 cut(s) 90
MscI TGGCCA 1 cut(s) 90
MseI TTAA 3 cut(s) 146, 246, 314
MslI CAYNNNNRTG 2 cut(s) 110, 303
Msp20I TGGCCA 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 134
NlaIII CATG 2 cut(s) 46, 89
NlaIV GGNNCC 1 cut(s) 254
OliI CACNNNNGTG 1 cut(s) 110
PfeI GAWTC 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 254
PspPI GGNCC 1 cut(s) 252
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
RseI CAYNNNNRTG 2 cut(s) 110, 303
SaqAI TTAA 3 cut(s) 146, 246, 314
Sau96I GGNCC 1 cut(s) 252
SetI ASST 1 cut(s) 323
SfaNI GCATC 1 cut(s) 287
SgeI CNNG 9 cut(s) 41, 55, 90, 98, 103, 239, 251, 269, 296
SmiMI CAYNNNNRTG 2 cut(s) 110, 303
Sse9I AATT 4 cut(s) 191, 211, 247, 292
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 15
TasI AATT 4 cut(s) 191, 211, 247, 292
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 3 cut(s) 146, 246, 314
Tru9I TTAA 3 cut(s) 146, 246, 314
TspDTI ATGAA 1 cut(s) 287
VspI ATTAAT 1 cut(s) 246
XapI RAATTY 2 cut(s) 191, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.