FvH4_2g39441

Jasmonate

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
28340171 .. 28342345
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39441.t2

Sequence Viewer

Length: 1173 bp
ATGGAGCTAATGCAAATACTTCACATGAACAAAGGCAACGGCGAGGCTAGTTATGCCCAAAACTCCAAAGTTCAGAACAAGATATTAACAATCGCAAAGCCAATCATCGAAGAAGCCTTGCTCAAACTGTTGGGGTCAAACAACAATGATATGGCATTGGAGAGTATGGGCATAGCGGATTTGGGTTGCTCATCTGGACCTAACACCTTTCTTCTCATATCGGAGATCATGGATGTCATACGTGCCAAACTCAGCAGCGGCCTGCTGCATCCCTCGTCGTCGTCAATGGAGTTTAGAGTGTTTCTCAACGACCTATTCAGCAACGACTTCAACACCGTCTTCATGTCACTTCCAGCATTCCACAACAAGCTGAGAAAAGACGATCGCTACAAGAGACTGTTCGGGGCTAACCCCAACCTCTTCATTTCCGCGGTGCCGGGAACTTTCTACGGCAGATTGTTTCCCAGAAACAGCCTTCATTTCGTTCACTCGTCCTCCAGTCTTCACTGGCTGTCTCAAGTTCCCCCGAGCCTGGACAGCACCGCCGGCACGGCCTTGAACAAGGGGAAGATCTACATTTCTAAGAGCAGCCCGCAATATGTGTTGGATGCGTACTCACTTCAATTCCACAAGGACTTCTCAATGTTTCTCAAGTCTCGGGCAGAAGAAATAGTTGGAGGAGGAAGAATGGTATTGTCATTCATAGGCAGGCCAACACTTGACCCTACAACCGAACAGAGTTGCTACCATTGGGAGCTATTAGCCCTTGCATTGATGAGCATGGTTTCAGATGGTCTTGTGGAAGAGGAGAAAGTTGATTCCTTCAACGCTCCTTACTATGCTCCATGCGCAGAGGAACTGAAGTCGGAGCTGCAGAAGGACGGGTCCTTCATAATGGACCGACTTGAAGCGTTCGAAATCGATTGGGATGGTGGTGCTGATGATCAAGCTATTACCATGAATGGTTTTGATCATGATCAAATGGTGGCTAGGAGTGGGAAGAGGGTGGCCAATACCATAAGAGCGGTGGCGGAGTCAATGATCGAAGCTCATTTTGGGATAGAGATTATGGATGATCTGTTTAGGAGGTACGCCGAACTCGTCACCAAACACTTGTTAGAGACAAGAACCAAGTATATCAATTTGGTCATTTCACTGATCAGAAGATATTGA

Protein Analysis

391

Amino Acids

43.81

Weight (kDa)

5.8

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 52 - 263 5e-85 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 850
AccB1I GGYRCC 1 cut(s) 433
AccBSI CCGCTC 1 cut(s) 1025
AccII CGCG 1 cut(s) 431
AciI CCGC 8 cut(s) 176, 258, 429, 431, 543, 593, 1025, 1031
AcoI YGGCCR 1 cut(s) 1008
AcuI CTGAAG 1 cut(s) 881
AfaI GTAC 2 cut(s) 614, 1091
AfiI CCNNNNNNNGG 1 cut(s) 532
AgsI TTSAA 5 cut(s) 331, 559, 623, 826, 908
AjnI CCWGG 1 cut(s) 531
AjuI GAANNNNNNNTTGG 4 cut(s) 657, 689, 1038, 1070
AluBI AGCT 6 cut(s) 7, 370, 757, 871, 950, 1049
AluI AGCT 6 cut(s) 7, 370, 757, 871, 950, 1049
Alw26I GTCTC 4 cut(s) 388, 519, 660, 1115
Ama87I CYCGRG 2 cut(s) 526, 657
AoxI GGCC 4 cut(s) 259, 552, 710, 1008
ApeKI GCWGC 4 cut(s) 255, 265, 588, 871
AspLEI GCGC 1 cut(s) 851
AspS9I GGNCC 3 cut(s) 197, 885, 898
AsuC2I CCSGG 1 cut(s) 438
AsuHPI GGTGA 1 cut(s) 1096
AsuII TTCGAA 1 cut(s) 915
AvaI CYCGRG 2 cut(s) 526, 657
AvaII GGWCC 3 cut(s) 197, 885, 898
BalI TGGCCA 1 cut(s) 1010
BanI GGYRCC 1 cut(s) 433
BbsI GAAGAC 2 cut(s) 331, 494
BbvI GCAGC 4 cut(s) 252, 267, 600, 858
BccI CCATC 2 cut(s) 785, 923
BceAI ACGGC 3 cut(s) 55, 466, 567
BciT130I CCWGG 1 cut(s) 533
BclI TGATCA 4 cut(s) 943, 970, 976, 1158
BcnI CCSGG 1 cut(s) 438
BcoDI GTCTC 4 cut(s) 388, 519, 660, 1115
BfaI CTAG 2 cut(s) 48, 990
BfmI CTRYAG 1 cut(s) 872
BglI GCCNNNNNGGC 1 cut(s) 551
BglII AGATCT 1 cut(s) 570
BisI GCNGC 5 cut(s) 256, 259, 266, 589, 872
BlsI GCNGC 5 cut(s) 257, 260, 267, 590, 873
Bme1390I CCNGG 2 cut(s) 438, 533
Bme18I GGWCC 3 cut(s) 197, 885, 898
BmeT110I CYCGRG 2 cut(s) 526, 657
BmgT120I GGNCC 3 cut(s) 197, 885, 898
BmiI GGNNCC 2 cut(s) 435, 886
BmrFI CCNGG 2 cut(s) 438, 533
BmsI GCATC 2 cut(s) 277, 598
BpiI GAAGAC 2 cut(s) 331, 494
BplI GAGNNNNNCTC 2 cut(s) 288, 320
BpmI CTGGAG 1 cut(s) 481
Bpu14I TTCGAA 1 cut(s) 915
BpuEI CTTGAG 2 cut(s) 501, 635
BpuMI CCSGG 1 cut(s) 438
Bsa29I ATCGAT 1 cut(s) 921
BsaAI YACGTR 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 975
BsaJI CCNNGG 1 cut(s) 429
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 1 cut(s) 532
Bse118I RCCGGY 1 cut(s) 545
Bse1I ACTGG 2 cut(s) 498, 512
Bse8I GATNNNNATC 1 cut(s) 975
BseBI CCWGG 1 cut(s) 533
BseCI ATCGAT 1 cut(s) 921
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 5 cut(s) 238, 268, 613, 934, 1078
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 1 cut(s) 532
BseMII CTCAG 2 cut(s) 265, 362
BseNI ACTGG 2 cut(s) 498, 512
BseRI GAGGAG 2 cut(s) 693, 821
BseXI GCAGC 4 cut(s) 252, 267, 600, 858
Bsh1236I CGCG 1 cut(s) 431
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 4 cut(s) 261, 554, 712, 1010
BshNI GGYRCC 1 cut(s) 433
BshVI ATCGAT 1 cut(s) 921
BsiEI CGRYCG 1 cut(s) 385
BsiHKCI CYCGRG 2 cut(s) 526, 657
BsiSI CCGG 2 cut(s) 437, 546
BslI CCNNNNNNNGG 1 cut(s) 532
BsmAI GTCTC 4 cut(s) 388, 519, 660, 1115
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 4 cut(s) 261, 554, 712, 1010
BsoBI CYCGRG 2 cut(s) 526, 657
Bsp119I TTCGAA 1 cut(s) 915
Bsp143I GATC 9 cut(s) 225, 382, 570, 943, 970, 976, 1041, 1075, 1158
BspACI CCGC 8 cut(s) 176, 258, 429, 431, 543, 593, 1025, 1031
BspANI GGCC 4 cut(s) 261, 554, 712, 1010
BspCNI CTCAG 2 cut(s) 264, 363
BspDI ATCGAT 1 cut(s) 921
BspFNI CGCG 1 cut(s) 431
BspHI TCATGA 1 cut(s) 973
BspLI GGNNCC 2 cut(s) 435, 886
BspMAI CTGCAG 1 cut(s) 876
BspT104I TTCGAA 1 cut(s) 915
BspT107I GGYRCC 1 cut(s) 433
BsrBI CCGCTC 1 cut(s) 1025
BsrFI RCCGGY 1 cut(s) 545
BsrI ACTGG 2 cut(s) 498, 512
BssAI RCCGGY 1 cut(s) 545
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 9 cut(s) 225, 382, 570, 943, 970, 976, 1041, 1075, 1158
Bst2UI CCWGG 1 cut(s) 533
Bst4CI ACNGT 3 cut(s) 129, 337, 399
Bst6I CTCTTC 3 cut(s) 425, 798, 995
BstBAI YACGTR 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 915
BstC8I GCNNGC 4 cut(s) 263, 547, 593, 710
BstDEI CTNAG 3 cut(s) 251, 371, 582
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 5 cut(s) 238, 268, 613, 934, 1078
BstFNI CGCG 1 cut(s) 431
BstHHI GCGC 1 cut(s) 851
BstKTI GATC 9 cut(s) 228, 385, 573, 946, 973, 979, 1044, 1078, 1161
BstMAI GTCTC 4 cut(s) 388, 519, 660, 1115
BstMBI GATC 9 cut(s) 225, 382, 570, 943, 970, 976, 1041, 1075, 1158
BstMCI CGRYCG 1 cut(s) 385
BstMWI GCNNNNNNNGC 5 cut(s) 53, 537, 546, 551, 848
BstNI CCWGG 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 436, 531
BstSFI CTRYAG 1 cut(s) 872
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 4 cut(s) 252, 267, 600, 858
BstV2I GAAGAC 2 cut(s) 331, 494
BstX2I RGATCY 1 cut(s) 570
BstYI RGATCY 1 cut(s) 570
Bsu15I ATCGAT 1 cut(s) 921
BsuRI GGCC 4 cut(s) 261, 554, 712, 1010
BsuTUI ATCGAT 1 cut(s) 921
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 5 cut(s) 238, 268, 613, 934, 1078
BtsIMutI CAGTG 2 cut(s) 505, 1154
Cac8I GCNNGC 4 cut(s) 263, 547, 593, 710
CciI TCATGA 1 cut(s) 973
CfoI GCGC 1 cut(s) 851
Cfr10I RCCGGY 1 cut(s) 545
Cfr13I GGNCC 3 cut(s) 197, 885, 898
Cfr42I CCGCGG 1 cut(s) 432
ClaI ATCGAT 1 cut(s) 921
Csp6I GTAC 2 cut(s) 613, 1090
CviAII CATG 7 cut(s) 25, 229, 343, 781, 846, 958, 974
CviQI GTAC 2 cut(s) 613, 1090
DdeI CTNAG 3 cut(s) 251, 371, 582
DpnI GATC 9 cut(s) 227, 384, 572, 945, 972, 978, 1043, 1077, 1160
DpnII GATC 9 cut(s) 225, 382, 570, 943, 970, 976, 1041, 1075, 1158
EaeI YGGCCR 1 cut(s) 1008
Eam1104I CTCTTC 3 cut(s) 425, 798, 995
EarI CTCTTC 3 cut(s) 425, 798, 995
EciI GGCGGA 1 cut(s) 1046
Eco47I GGWCC 3 cut(s) 197, 885, 898
Eco57I CTGAAG 1 cut(s) 881
Eco88I CYCGRG 2 cut(s) 526, 657
EcoO109I RGGNCCY 1 cut(s) 885
EcoRII CCWGG 1 cut(s) 531
FaeI CATG 7 cut(s) 28, 232, 346, 784, 849, 961, 977
FatI CATG 7 cut(s) 24, 228, 342, 780, 845, 957, 973
FauI CCCGC 1 cut(s) 600
FbaI TGATCA 4 cut(s) 943, 970, 976, 1158
Fnu4HI GCNGC 5 cut(s) 256, 259, 266, 589, 872
FokI GGATG 5 cut(s) 245, 255, 620, 941, 1085
Fsp4HI GCNGC 5 cut(s) 256, 259, 266, 589, 872
FspBI CTAG 2 cut(s) 48, 990
FspI TGCGCA 1 cut(s) 850
GlaI GCGC 1 cut(s) 850
GluI GCNGC 5 cut(s) 256, 259, 266, 589, 872
GsuI CTGGAG 1 cut(s) 481
HaeIII GGCC 4 cut(s) 261, 554, 712, 1010
HapII CCGG 2 cut(s) 437, 546
HhaI GCGC 1 cut(s) 851
Hin1II CATG 7 cut(s) 28, 232, 346, 784, 849, 961, 977
Hin6I GCGC 1 cut(s) 849
HinP1I GCGC 1 cut(s) 849
HinfI GANTC 2 cut(s) 818, 1034
HpaII CCGG 2 cut(s) 437, 546
HphI GGTGA 1 cut(s) 1096
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 5 cut(s) 75, 223, 790, 868, 1163
Hpy188III TCNNGA 2 cut(s) 195, 974
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 2 cut(s) 280, 283
HpyAV CCTTC 4 cut(s) 485, 832, 871, 898
HpyCH4III ACNGT 3 cut(s) 129, 337, 399
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 4 cut(s) 13, 268, 770, 874
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 537, 546, 551, 848
HpyF3I CTNAG 3 cut(s) 251, 371, 582
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 7 cut(s) 28, 232, 346, 784, 849, 961, 977
HspAI GCGC 1 cut(s) 849
KroI GCCGGC 1 cut(s) 545
KroNI GCCGGC 1 cut(s) 547
Ksp22I TGATCA 4 cut(s) 943, 970, 976, 1158
KspI CCGCGG 1 cut(s) 432
Kzo9I GATC 9 cut(s) 225, 382, 570, 943, 970, 976, 1041, 1075, 1158
LmnI GCTCC 5 cut(s) 4, 754, 835, 847, 868
Lsp1109I GCAGC 4 cut(s) 252, 267, 600, 858
LweI GCATC 2 cut(s) 277, 598
MaeI CTAG 2 cut(s) 48, 990
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 2 cut(s) 345, 1102
MalI GATC 9 cut(s) 227, 384, 572, 945, 972, 978, 1043, 1077, 1160
MbiI CCGCTC 1 cut(s) 1025
MboI GATC 9 cut(s) 225, 382, 570, 943, 970, 976, 1041, 1075, 1158
MflI RGATCY 1 cut(s) 570
MlsI TGGCCA 1 cut(s) 1010
MluCI AATT 2 cut(s) 623, 1141
MluNI TGGCCA 1 cut(s) 1010
MlyI GAGTC 1 cut(s) 1043
MmeI TCCRAC 3 cut(s) 585, 655, 846
Mox20I TGGCCA 1 cut(s) 1010
MroNI GCCGGC 1 cut(s) 545
MscI TGGCCA 1 cut(s) 1010
MseI TTAA 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 1010
MspA1I CMGCKG 2 cut(s) 258, 431
MspI CCGG 2 cut(s) 437, 546
MspR9I CCNGG 2 cut(s) 438, 533
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 1 cut(s) 533
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 5 cut(s) 53, 537, 546, 551, 848
NaeI GCCGGC 1 cut(s) 547
NciI CCSGG 1 cut(s) 438
NdeII GATC 9 cut(s) 225, 382, 570, 943, 970, 976, 1041, 1075, 1158
NgoMIV GCCGGC 1 cut(s) 545
NlaIII CATG 7 cut(s) 28, 232, 346, 784, 849, 961, 977
NlaIV GGNNCC 2 cut(s) 435, 886
NmuCI GTSAC 2 cut(s) 345, 1102
NsbI TGCGCA 1 cut(s) 850
NspV TTCGAA 1 cut(s) 915
PagI TCATGA 1 cut(s) 973
PcsI WCGNNNNNNNCGW 1 cut(s) 1098
PctI GAATGC 1 cut(s) 356
PdiI GCCGGC 1 cut(s) 547
PfeI GAWTC 1 cut(s) 818
PkrI GCNGC 5 cut(s) 257, 260, 267, 590, 873
Ple19I CGATCG 1 cut(s) 385
PleI GAGTC 1 cut(s) 1042
PpsI GAGTC 1 cut(s) 1042
Ppu21I YACGTR 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 885
Psp5II RGGWCCY 1 cut(s) 885
Psp6I CCWGG 1 cut(s) 531
PspGI CCWGG 1 cut(s) 531
PspN4I GGNNCC 2 cut(s) 435, 886
PspPI GGNCC 3 cut(s) 197, 885, 898
PspPPI RGGWCCY 1 cut(s) 885
PstI CTGCAG 1 cut(s) 876
PsuI RGATCY 1 cut(s) 570
PvuI CGATCG 1 cut(s) 385
RsaI GTAC 2 cut(s) 614, 1091
RsaNI GTAC 2 cut(s) 613, 1090
SacII CCGCGG 1 cut(s) 432
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 5 cut(s) 256, 259, 266, 589, 872
Sau3AI GATC 9 cut(s) 225, 382, 570, 943, 970, 976, 1041, 1075, 1158
Sau96I GGNCC 3 cut(s) 197, 885, 898
SchI GAGTC 1 cut(s) 1043
ScrFI CCNGG 2 cut(s) 438, 533
SfaNI GCATC 2 cut(s) 277, 598
SfcI CTRYAG 1 cut(s) 872
Sfr303I CCGCGG 1 cut(s) 432
SfuI TTCGAA 1 cut(s) 915
SgrBI CCGCGG 1 cut(s) 432
SinI GGWCC 3 cut(s) 197, 885, 898
SmlI CTYRAG 2 cut(s) 516, 650
SmoI CTYRAG 2 cut(s) 516, 650
Sse9I AATT 2 cut(s) 623, 1141
SsiI CCGC 8 cut(s) 176, 258, 429, 431, 543, 593, 1025, 1031
SspMI CTAG 2 cut(s) 48, 990
StyD4I CCNGG 2 cut(s) 436, 531
TaaI ACNGT 3 cut(s) 129, 337, 399
TaiI ACGT 1 cut(s) 244
TaqI TCGA 4 cut(s) 108, 915, 921, 1044
TaqII GACCGA 1 cut(s) 915
TasI AATT 2 cut(s) 623, 1141
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 1 cut(s) 818
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 2 cut(s) 512, 1161
TseFI GTSAC 2 cut(s) 345, 1102
TseI GCWGC 4 cut(s) 255, 265, 588, 871
Tsp45I GTSAC 2 cut(s) 345, 1102
TspDTI ATGAA 7 cut(s) 41, 331, 412, 467, 691, 880, 974
TspRI CASTG 2 cut(s) 512, 1161
VpaK11BI GGWCC 3 cut(s) 197, 885, 898
XcmI CCANNNNNNNNNTGG 1 cut(s) 1024
XspI CTAG 2 cut(s) 48, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.