Rorug06G0305600

Jasmonate

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
45671669 .. 45673734
2066 bp
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UTR
Exon/CDS
Intron
Rorug06G0305600.1

Sequence Viewer

Length: 186 bp
ATGCCGGCAGCATTTGAACCACTTCAAGCTGCATTTCTCTATAAATATCTATCTGCCCCCTCATTCGTTTCCACACACACCCATTTCTTTCTCTCTCACTCTCCTTCTTGCTTTTCAGCAAGGCCCAACAAGATAGAAAGCTTTTGTGTGGAGCTGAGAGCAGAGAAAGGGGCAGCTGCAAGCTAG

Protein Analysis

61

Amino Acids

6.7

Weight (kDa)

7.85

Isoelectric Point (pI)

62.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 17, 26
AluBI AGCT 5 cut(s) 29, 141, 154, 176, 183
AluI AGCT 5 cut(s) 29, 141, 154, 176, 183
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 4 cut(s) 8, 29, 173, 176
Asp700I GAANNNNTTC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 16, 20, 163
BfaI CTAG 1 cut(s) 184
BisI GCNGC 4 cut(s) 9, 30, 174, 177
BlsI GCNGC 4 cut(s) 10, 31, 175, 178
BmgT120I GGNCC 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 4
BseMII CTCAG 1 cut(s) 146
BseXI GCAGC 3 cut(s) 16, 20, 163
BshFI GGCC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 5
BsnI GGCC 1 cut(s) 124
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BstC8I GCNNGC 2 cut(s) 6, 181
BstDEI CTNAG 1 cut(s) 155
BstV1I GCAGC 3 cut(s) 16, 20, 163
BsuRI GGCC 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 6, 181
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 123
CviJI RGCY 6 cut(s) 29, 124, 141, 154, 176, 183
CviKI_1 RGCY 6 cut(s) 29, 124, 141, 154, 176, 183
DdeI CTNAG 1 cut(s) 155
FaiI YATR 1 cut(s) 42
Fnu4HI GCNGC 4 cut(s) 9, 30, 174, 177
Fsp4HI GCNGC 4 cut(s) 9, 30, 174, 177
FspBI CTAG 1 cut(s) 184
GluI GCNGC 4 cut(s) 9, 30, 174, 177
HaeIII GGCC 1 cut(s) 124
HapII CCGG 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 139
HpaII CCGG 1 cut(s) 5
HpyAV CCTTC 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 32, 179
HpyF3I CTNAG 1 cut(s) 155
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 1 cut(s) 18
Lsp1109I GCAGC 3 cut(s) 16, 20, 163
MaeI CTAG 1 cut(s) 184
MnlI CCTC 1 cut(s) 70
MroNI GCCGGC 1 cut(s) 4
MroXI GAANNNNTTC 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 5
NaeI GCCGGC 1 cut(s) 6
NgoMIV GCCGGC 1 cut(s) 4
PdiI GCCGGC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 21
PkrI GCNGC 4 cut(s) 10, 31, 175, 178
PspPI GGNCC 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 176
SatI GCNGC 4 cut(s) 9, 30, 174, 177
Sau96I GGNCC 1 cut(s) 123
SetI ASST 5 cut(s) 31, 143, 156, 178, 185
SgeI CNNG 5 cut(s) 17, 38, 120, 132, 142
SspMI CTAG 1 cut(s) 184
TseI GCWGC 4 cut(s) 8, 29, 173, 176
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.