FvH4_4g32530

Jasmonate O-methyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001051
Physical Location & Seq
Reverse (-)
31177405 .. 31183137
5733 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32530.t2

Sequence Viewer

Length: 1119 bp
ATGGAGGTGAAGCAAATACTTCACATGAACAAAGGAAATGGCGAGACTAGTTATGCCAAAAACTCCACAGTTCAGAGGAAAACATTATCTATTGCCACGCCGATCATTGAAGAAGCAGTGCTACAACTCTTGGGATCCAATGTCATGGGAATAGAGAGCATGGGAATCGCAGATTTGGGCTGCTCATCCGGTCCCAACACCTTACTACTCATCTCGCAGATCATGGATGCAATACATGCTAAACGTAGCAAAGTTACAGAGCTTAGAGTGTCTCTTAATGACCTCTTCAGAAACGACTTCAATTCCATCTTCCTCTCACTCCCTTCCTTCTACAACAAACTGAAGCAAGATTACTATAATAATGGCCGTGATCCCAATCTCTTCATTTCTGCTGTGCCCGGTTCGTTTTACGGTCCATTGTTTCCTAGAAAGAGTATGCACTTTGTTCATTCTTCTTTTAGTGTTCACTGGCTCTCTCAGGTTCCCGATGGCCTAAACAACAAAGGAAAGATTTATGTTTCTAAGACCAGCCCGCAGTGCGTATTAGACGCATACTCCATGCAGTTTCAGAAAGACTTTTCGGTTTTTCTGAGGTCTAGGGCACAAGAAATAGTCGCTGGAGGTCGAATGGTGTTGTCCTTCATGGGAAGGCCATCATCTGACCCAACAGCTGATGAAGGAACTTTCTACCAGTTCGAGCTCTTAGGCCAGGCTTTAATGGCCATGGTTTCCAAAGGTCTTATAGAAGAGGAGAAGGTCAATTCCTTCAACATACCCTACTATGCTTCATGTGTAGAGGAATTGGAATTGGTGTTAGAAAAAGAAGGGTCTTTCAGCAAGGACCGCCTTGAAGCTTTCGGAGTGGACTGGGATACTGATGGCATTGATCTCGATCTCAACATGCTTGAACGTGATGATCAATTAATAACAAGCAGTGGGCAGCGAATGGCCAATAGCATAAGAGTTGTGACAGAGTCGATGCTCGAATTTCATTTTGGAAAATGGGTAATGGCTGATGTGTTTCATAAATATGCAGAACTCGTTAGCAAGTACTTATCAAATAGGACTACCATACCTAAGTTTAGGGTTTTCGTCATCTCACTCGTTAAGAAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

373

Amino Acids

41.91

Weight (kDa)

6.2

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 50 - 377 7.8e-113 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 533, 844
AclWI GGATC 3 cut(s) 129, 142, 365
AcoI YGGCCR 3 cut(s) 364, 720, 948
AcsI RAATTY 1 cut(s) 986
AcuI CTGAAG 2 cut(s) 271, 362
AfaI GTAC 1 cut(s) 1052
AgsI TTSAA 5 cut(s) 110, 301, 769, 851, 908
AhlI ACTAGT 1 cut(s) 47
AjnI CCWGG 1 cut(s) 708
AjuI GAANNNNNNNTTGG 2 cut(s) 978, 1010
AluBI AGCT 4 cut(s) 262, 671, 700, 854
AluI AGCT 4 cut(s) 262, 671, 700, 854
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 2 cut(s) 38, 276
AlwI GGATC 3 cut(s) 129, 142, 365
AoxI GGCC 6 cut(s) 364, 490, 650, 706, 720, 948
ApeKI GCWGC 2 cut(s) 180, 940
ApoI RAATTY 1 cut(s) 986
AseI ATTAAT 1 cut(s) 923
AspS9I GGNCC 3 cut(s) 191, 413, 841
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 3 cut(s) 191, 413, 841
BaeGI GKGCMC 2 cut(s) 399, 604
BalI TGGCCA 2 cut(s) 722, 950
BamHI GGATCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 702
BarI GAAGNNNNNNTAC 4 cut(s) 105, 137, 335, 367
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 2 cut(s) 167, 952
BccI CCATC 4 cut(s) 314, 482, 661, 872
BceAI ACGGC 1 cut(s) 351
BcgI CGANNNNNNTGC 4 cut(s) 148, 182, 871, 905
BciT130I CCWGG 1 cut(s) 710
BciVI GTATCC 1 cut(s) 865
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 38, 276
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 3 cut(s) 48, 426, 597
BfuI GTATCC 1 cut(s) 865
BisI GCNGC 2 cut(s) 181, 941
BlsI GCNGC 2 cut(s) 182, 942
BmcAI AGTACT 1 cut(s) 1052
Bme1390I CCNGG 2 cut(s) 399, 710
Bme18I GGWCC 3 cut(s) 191, 413, 841
BmgT120I GGNCC 3 cut(s) 191, 413, 841
BmiI GGNNCC 3 cut(s) 136, 193, 483
BmrFI CCNGG 2 cut(s) 399, 710
BmrI ACTGGG 1 cut(s) 877
BmsI GCATC 2 cut(s) 217, 969
BmuI ACTGGG 1 cut(s) 877
BpmI CTGGAG 1 cut(s) 639
BpuMI CCSGG 1 cut(s) 399
BsaBI GATNNNNATC 2 cut(s) 375, 891
BsaJI CCNNGG 1 cut(s) 723
BsaWI WCCGGW 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bse1I ACTGG 3 cut(s) 473, 691, 872
Bse8I GATNNNNATC 2 cut(s) 375, 891
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 1 cut(s) 723
BseGI GGATG 2 cut(s) 185, 232
BseJI GATNNNNATC 2 cut(s) 375, 891
BseMII CTCAG 2 cut(s) 491, 581
BseNI ACTGG 3 cut(s) 473, 691, 872
BseRI GAGGAG 1 cut(s) 764
BseSI GKGCMC 2 cut(s) 399, 604
BseXI GCAGC 2 cut(s) 167, 952
BshFI GGCC 6 cut(s) 366, 492, 652, 708, 722, 950
BsiHKAI GWGCWC 1 cut(s) 702
BsiSI CCGG 2 cut(s) 189, 399
BslFI GGGAC 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 38, 276
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 6 cut(s) 366, 492, 652, 708, 722, 950
Bsp1286I GDGCHC 3 cut(s) 399, 604, 702
Bsp143I GATC 7 cut(s) 102, 134, 219, 370, 886, 892, 916
Bsp19I CCATGG 1 cut(s) 723
BspACI CCGC 2 cut(s) 533, 844
BspANI GGCC 6 cut(s) 366, 492, 652, 708, 722, 950
BspCNI CTCAG 2 cut(s) 490, 582
BspLI GGNNCC 3 cut(s) 136, 193, 483
BspPI GGATC 3 cut(s) 129, 142, 365
BsrI ACTGG 3 cut(s) 473, 691, 872
BssECI CCNNGG 1 cut(s) 723
BssMI GATC 7 cut(s) 102, 134, 219, 370, 886, 892, 916
BssT1I CCWWGG 1 cut(s) 723
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 2 cut(s) 70, 413
Bst6I CTCTTC 3 cut(s) 290, 386, 741
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 6 cut(s) 263, 477, 522, 590, 703, 1077
BstDSI CCRYGG 1 cut(s) 723
BstF5I GGATG 2 cut(s) 185, 232
BstKTI GATC 7 cut(s) 105, 137, 222, 373, 889, 895, 919
BstMAI GTCTC 2 cut(s) 38, 276
BstMBI GATC 7 cut(s) 102, 134, 219, 370, 886, 892, 916
BstMWI GCNNNNNNNGC 4 cut(s) 236, 537, 719, 843
BstNI CCWGG 1 cut(s) 710
BstNSI RCATGY 2 cut(s) 239, 904
BstSCI CCNGG 2 cut(s) 397, 708
BstSLI GKGCMC 2 cut(s) 399, 604
BstV1I GCAGC 2 cut(s) 167, 952
BstX2I RGATCY 1 cut(s) 134
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 1 cut(s) 134
BsuI GTATCC 1 cut(s) 865
BsuRI GGCC 6 cut(s) 366, 492, 652, 708, 722, 950
BtgI CCRYGG 1 cut(s) 723
BtsCI GGATG 2 cut(s) 185, 232
BtsI GCAGTG 3 cut(s) 123, 542, 940
BtsIMutI CAGTG 4 cut(s) 123, 466, 542, 940
Cac8I GCNNGC 1 cut(s) 533
Cfr13I GGNCC 3 cut(s) 191, 413, 841
CseI GACGC 1 cut(s) 557
Csp6I GTAC 1 cut(s) 1051
CviQI GTAC 1 cut(s) 1051
DdeI CTNAG 6 cut(s) 263, 477, 522, 590, 703, 1077
DpnI GATC 7 cut(s) 104, 136, 221, 372, 888, 894, 918
DpnII GATC 7 cut(s) 102, 134, 219, 370, 886, 892, 916
EaeI YGGCCR 3 cut(s) 364, 720, 948
Eam1104I CTCTTC 3 cut(s) 290, 386, 741
EarI CTCTTC 3 cut(s) 290, 386, 741
Ecl136II GAGCTC 1 cut(s) 700
Eco130I CCWWGG 1 cut(s) 723
Eco24I GRGCYC 1 cut(s) 702
Eco47I GGWCC 3 cut(s) 191, 413, 841
Eco53kI GAGCTC 1 cut(s) 700
Eco57I CTGAAG 2 cut(s) 271, 362
EcoICRI GAGCTC 1 cut(s) 700
EcoRII CCWGG 1 cut(s) 708
EcoT14I CCWWGG 1 cut(s) 723
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 1 cut(s) 723
FaqI GGGAC 1 cut(s) 177
FauI CCCGC 1 cut(s) 540
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 2 cut(s) 181, 941
FokI GGATG 2 cut(s) 172, 239
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 2 cut(s) 181, 941
FspBI CTAG 3 cut(s) 48, 426, 597
GluI GCNGC 2 cut(s) 181, 941
GsuI CTGGAG 1 cut(s) 639
HaeIII GGCC 6 cut(s) 366, 492, 652, 708, 722, 950
HapII CCGG 2 cut(s) 189, 399
HgaI GACGC 1 cut(s) 557
HindIII AAGCTT 1 cut(s) 852
HinfI GANTC 2 cut(s) 165, 974
HpaII CCGG 2 cut(s) 189, 399
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 466, 865
Hpy188I TCNGA 6 cut(s) 75, 290, 570, 591, 661, 860
Hpy188III TCNNGA 2 cut(s) 485, 890
Hpy8I GTNNAC 2 cut(s) 466, 865
HpyAV CCTTC 8 cut(s) 333, 337, 642, 649, 671, 748, 775, 818
HpyCH4III ACNGT 2 cut(s) 70, 413
HpyCH4IV ACGT 2 cut(s) 244, 910
HpyCH4V TGCA 4 cut(s) 230, 439, 562, 1034
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 537, 719, 843
HpyF3I CTNAG 6 cut(s) 263, 477, 522, 590, 703, 1077
HpySE526I ACGT 2 cut(s) 244, 910
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 7 cut(s) 102, 134, 219, 370, 886, 892, 916
Lsp1109I GCAGC 2 cut(s) 167, 952
LweI GCATC 2 cut(s) 217, 969
MaeI CTAG 3 cut(s) 48, 426, 597
MaeII ACGT 2 cut(s) 244, 910
MaeIII GTNAC 2 cut(s) 253, 967
MalI GATC 7 cut(s) 104, 136, 221, 372, 888, 894, 918
MboI GATC 7 cut(s) 102, 134, 219, 370, 886, 892, 916
MboII GAAGA 6 cut(s) 122, 277, 301, 373, 444, 758
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 3 cut(s) 399, 604, 702
MlsI TGGCCA 2 cut(s) 722, 950
MluCI AATT 6 cut(s) 301, 760, 800, 806, 920, 986
MluNI TGGCCA 2 cut(s) 722, 950
MlyI GAGTC 1 cut(s) 983
MnlI CCTC 7 cut(s) 69, 293, 323, 585, 614, 742, 790
Mox20I TGGCCA 2 cut(s) 722, 950
MscI TGGCCA 2 cut(s) 722, 950
MseI TTAA 4 cut(s) 276, 716, 923, 1107
MslI CAYNNNNRTG 1 cut(s) 1029
Msp20I TGGCCA 2 cut(s) 722, 950
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 2 cut(s) 189, 399
MspR9I CCNGG 2 cut(s) 399, 710
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 4 cut(s) 236, 537, 719, 843
NciI CCSGG 1 cut(s) 399
NcoI CCATGG 1 cut(s) 723
NdeII GATC 7 cut(s) 102, 134, 219, 370, 886, 892, 916
NlaIV GGNNCC 3 cut(s) 136, 193, 483
NmuCI GTSAC 1 cut(s) 967
NspI RCATGY 2 cut(s) 239, 904
PfeI GAWTC 1 cut(s) 165
PflFI GACNNNGTC 1 cut(s) 973
PkrI GCNGC 2 cut(s) 182, 942
PleI GAGTC 1 cut(s) 982
PpsI GAGTC 1 cut(s) 982
PshBI ATTAAT 1 cut(s) 923
Psp124BI GAGCTC 1 cut(s) 702
Psp6I CCWGG 1 cut(s) 708
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 3 cut(s) 136, 193, 483
PspPI GGNCC 3 cut(s) 191, 413, 841
PsuI RGATCY 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 973
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 1 cut(s) 1052
RsaNI GTAC 1 cut(s) 1051
RseI CAYNNNNRTG 1 cut(s) 1029
SacI GAGCTC 1 cut(s) 702
SaqAI TTAA 4 cut(s) 276, 716, 923, 1107
SatI GCNGC 2 cut(s) 181, 941
Sau3AI GATC 7 cut(s) 102, 134, 219, 370, 886, 892, 916
Sau96I GGNCC 3 cut(s) 191, 413, 841
ScaI AGTACT 1 cut(s) 1052
SchI GAGTC 1 cut(s) 983
ScrFI CCNGG 2 cut(s) 399, 710
SduI GDGCHC 3 cut(s) 399, 604, 702
SfaNI GCATC 2 cut(s) 217, 969
SinI GGWCC 3 cut(s) 191, 413, 841
SmiMI CAYNNNNRTG 1 cut(s) 1029
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 6 cut(s) 301, 760, 800, 806, 920, 986
SsiI CCGC 2 cut(s) 533, 844
SspMI CTAG 3 cut(s) 48, 426, 597
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 2 cut(s) 397, 708
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 2 cut(s) 70, 413
TaiI ACGT 2 cut(s) 247, 913
TaqI TCGA 5 cut(s) 625, 696, 891, 977, 984
TasI AATT 6 cut(s) 301, 760, 800, 806, 920, 986
TatI WGTACW 1 cut(s) 1050
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 4 cut(s) 276, 716, 923, 1107
Tru9I TTAA 4 cut(s) 276, 716, 923, 1107
TscAI CASTG 4 cut(s) 123, 473, 542, 940
TseFI GTSAC 1 cut(s) 967
TseI GCWGC 2 cut(s) 180, 940
Tsp45I GTSAC 1 cut(s) 967
TspDTI ATGAA 8 cut(s) 41, 373, 437, 631, 690, 777, 980, 1013
TspRI CASTG 4 cut(s) 123, 473, 542, 940
Tth111I GACNNNGTC 1 cut(s) 973
VpaK11BI GGWCC 3 cut(s) 191, 413, 841
VspI ATTAAT 1 cut(s) 923
XapI RAATTY 1 cut(s) 986
XceI RCATGY 2 cut(s) 239, 904
XspI CTAG 3 cut(s) 48, 426, 597
ZrmI AGTACT 1 cut(s) 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.