Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Forward (+)

1579362 .. 1582032

Gene Structure 2671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGAGGTGCTGCAAATACTTCACATGAACCAAGGCAATGGCGAGACTAGTTATGCTCAAAGCTCTACAGTTCAGAGAAAAATATTATCCGTCGTAAAGCCAATCATTGATGAAGCTGTACAAAAAATGTTGTGCTCAAATATAGCACCAATTGGGAGCATGGGAATAGCTGATTTGGGTTGCTCATCTGGACCAAACACCTTACTACTCATCTCCATAATAATTGATGCCATACATGCCACAAGTTGCTCATCATCATCCACAGAGTTTAGAGTGTTTCTAAACGACCTCTTTAGCAACGACTTCAACACCATTTTTATGTCACTCCCGGCATTCTATAACCAACTGAAGGAAGAAAAAGGTGATGGATTCGGGTCTTTCTTTATCTCCGCCGTGCCAGGCTCGTTTTACGGCAGATTGTTTCCAGCCAAGAGTTTGCATTTCGTGCACTCTTCTTCTAGTCTTCATTGGCTCTCTCAAGTCCCTCCTGGGCTGGATTGCCAGGCAGCTGGCAAATCATTGAACAAAGGAAAGATTTACATTTCTAAGACCAGCCCTCAATGCGTTTTGGAAGCATATTCGCTTCAATTTCACAAGGACTTTTTGCTATTTCTCAAGTCCAGGGCTGAAGAAATAGTAGGTGGAGGAAGAATGGTGTTGTCACTCATGGGCAGGTCGTCCTCTGACCCATCAACTCAAGAGAGTTGCTACCAATGGGAACTCCTAGCTCATGCATTAATGAGCATGGTTTCAGAGGGTCTCATTGAAGAGGAAAAGGTTGATTCATTCAACGCTCCGTACTATGCCCCAAGTGAAGAGCAATTGAAATTTGAGTTAGAAAAAGAAGGATCATTTACAATGGACCGCCTTGAAGCCTTTGAAATTGATTGGGATGGTGGTGCAGAAATATCTGCCTTAGCTAGTGGGCAGCGAGTGGCCAAGACTGTAAGAGCTGTGGTTGAGTCGATGATTGAATCTCACTTTGGAAAAGATATCATGGATGATCTATTTCGTCGGTACGCTGAGCTCGTCGCCGATCACTTGTCAAAATCTAGAACCAAGAACATCAATTTGGTTGTTTCAGTCATTAGAAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

367

Amino Acids

40.42

Weight (kDa)

5.28

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	663
AciI	CCGC	2 cut(s)	390, 865
AclWI	GGATC	1 cut(s)	856
AcoI	YGGCCR	1 cut(s)	936
AcsI	RAATTY	1 cut(s)	827
AcuI	CTGAAG	2 cut(s)	368, 648
AfaI	GTAC	3 cut(s)	120, 800, 1019
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	9 cut(s)	307, 523, 587, 767, 790, 826, 872, 881, 974
AhlI	ACTAGT	1 cut(s)	47
AjnI	CCWGG	4 cut(s)	397, 487, 501, 620
AjuI	GAANNNNNNNTTGG	4 cut(s)	966, 998, 1055, 1087
AluBI	AGCT	8 cut(s)	63, 116, 170, 509, 728, 920, 953, 1027
AluI	AGCT	8 cut(s)	63, 116, 170, 509, 728, 920, 953, 1027
Alw21I	GWGCWC	3 cut(s)	137, 450, 1029
Alw26I	GTCTC	2 cut(s)	38, 764
Alw44I	GTGCAC	1 cut(s)	446
AlwI	GGATC	1 cut(s)	856
AoxI	GGCC	1 cut(s)	936
ApaLI	GTGCAC	1 cut(s)	446
ApeKI	GCWGC	3 cut(s)	10, 506, 928
ApoI	RAATTY	1 cut(s)	827
AseI	ATTAAT	1 cut(s)	737
AspS9I	GGNCC	2 cut(s)	191, 862
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	191, 862
BaeGI	GKGCMC	1 cut(s)	450
BalI	TGGCCA	1 cut(s)	938
BanII	GRGCYC	1 cut(s)	1029
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	3 cut(s)	137, 450, 1029
BbvI	GCAGC	2 cut(s)	518, 940
BccI	CCATC	3 cut(s)	359, 697, 887
BceAI	ACGGC	2 cut(s)	377, 427
BciT130I	CCWGG	4 cut(s)	399, 489, 503, 622
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	38, 764
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	5 cut(s)	48, 459, 725, 921, 1053
BfmI	CTRYAG	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	663
BisI	GCNGC	3 cut(s)	11, 507, 929
BlpI	GCTNAGC	1 cut(s)	1023
BlsI	GCNGC	3 cut(s)	12, 508, 930
Bme1390I	CCNGG	5 cut(s)	329, 399, 489, 503, 622
Bme18I	GGWCC	2 cut(s)	191, 862
BmgT120I	GGNCC	2 cut(s)	191, 862
BmrFI	CCNGG	5 cut(s)	329, 399, 489, 503, 622
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	916
Bpu1102I	GCTNAGC	1 cut(s)	1023
BpuEI	CTTGAG	3 cut(s)	462, 599, 681
BpuMI	CCSGG	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	3 cut(s)	31, 488, 621
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	43
BseBI	CCWGG	4 cut(s)	399, 489, 503, 622
BseDI	CCNNGG	3 cut(s)	31, 488, 621
BseGI	GGATG	3 cut(s)	257, 898, 1006
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	1014
BseSI	GKGCMC	1 cut(s)	450
BseXI	GCAGC	2 cut(s)	518, 940
BsgI	GTGCAG	1 cut(s)	921
BshFI	GGCC	1 cut(s)	938
BsiHKAI	GWGCWC	3 cut(s)	137, 450, 1029
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	2 cut(s)	38, 764
BsmFI	GGGAC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	938
Bso31I	GGTCTC	1 cut(s)	764
Bsp1286I	GDGCHC	3 cut(s)	137, 450, 1029
Bsp1407I	TGTACA	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	848, 1003, 1036
Bsp1720I	GCTNAGC	1 cut(s)	1023
BspACI	CCGC	2 cut(s)	390, 865
BspANI	GGCC	1 cut(s)	938
BspCNI	CTCAG	1 cut(s)	1015
BspMI	ACCTGC	1 cut(s)	663
BspPI	GGATC	1 cut(s)	856
BspQI	GCTCTTC	1 cut(s)	810
BspTNI	GGTCTC	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	43
BsrGI	TGTACA	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	31, 488, 621
BssMI	GATC	3 cut(s)	848, 1003, 1036
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	4 cut(s)	399, 489, 503, 622
Bst4CI	ACNGT	2 cut(s)	70, 946
Bst6I	CTCTTC	3 cut(s)	457, 762, 810
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstAUI	TGTACA	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	511
BstDEI	CTNAG	3 cut(s)	546, 916, 1023
BstF5I	GGATG	3 cut(s)	257, 898, 1006
BstKTI	GATC	3 cut(s)	851, 1006, 1039
BstMAI	GTCTC	2 cut(s)	38, 764
BstMBI	GATC	3 cut(s)	848, 1003, 1036
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 445, 561
BstNI	CCWGG	4 cut(s)	399, 489, 503, 622
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	5 cut(s)	327, 397, 487, 501, 620
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	518, 940
BstV2I	GAAGAC	1 cut(s)	455
BstXI	CCANNNNNNTGG	2 cut(s)	38, 509
BsuRI	GGCC	1 cut(s)	938
BtsCI	GGATG	3 cut(s)	257, 898, 1006
BveI	ACCTGC	1 cut(s)	663
Cac8I	GCNNGC	1 cut(s)	511
Cfr13I	GGNCC	2 cut(s)	191, 862
Csp6I	GTAC	3 cut(s)	119, 799, 1018
CviAII	CATG	7 cut(s)	25, 160, 236, 667, 731, 745, 997
CviQI	GTAC	3 cut(s)	119, 799, 1018
DdeI	CTNAG	3 cut(s)	546, 916, 1023
DpnI	GATC	3 cut(s)	850, 1005, 1038
DpnII	GATC	3 cut(s)	848, 1003, 1036
EaeI	YGGCCR	1 cut(s)	936
Eam1104I	CTCTTC	3 cut(s)	457, 762, 810
EarI	CTCTTC	3 cut(s)	457, 762, 810
EciI	GGCGGA	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	1027
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	1029
Eco31I	GGTCTC	1 cut(s)	764
Eco32I	GATATC	1 cut(s)	994
Eco47I	GGWCC	2 cut(s)	191, 862
Eco53kI	GAGCTC	1 cut(s)	1027
Eco57I	CTGAAG	2 cut(s)	368, 648
EcoICRI	GAGCTC	1 cut(s)	1027
EcoRII	CCWGG	4 cut(s)	397, 487, 501, 620
EcoRV	GATATC	1 cut(s)	994
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	1029
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	7 cut(s)	28, 163, 239, 670, 734, 748, 1000
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	7 cut(s)	24, 159, 235, 666, 730, 744, 996
Fnu4HI	GCNGC	3 cut(s)	11, 507, 929
FokI	GGATG	3 cut(s)	244, 905, 1013
FriOI	GRGCYC	1 cut(s)	1029
Fsp4HI	GCNGC	3 cut(s)	11, 507, 929
FspBI	CTAG	5 cut(s)	48, 459, 725, 921, 1053
GluI	GCNGC	3 cut(s)	11, 507, 929
HaeIII	GGCC	1 cut(s)	938
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	7 cut(s)	28, 163, 239, 670, 734, 748, 1000
HinfI	GANTC	4 cut(s)	369, 782, 962, 974
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	3 cut(s)	75, 685, 754
Hpy188III	TCNNGA	3 cut(s)	189, 698, 1053
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	3 cut(s)	95, 1017, 1034
HpyAV	CCTTC	2 cut(s)	343, 839
HpyCH4III	ACNGT	2 cut(s)	70, 946
HpyCH4V	TGCA	5 cut(s)	13, 439, 448, 734, 902
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 445, 561
HpyF3I	CTNAG	3 cut(s)	546, 916, 1023
Hsp92II	CATG	7 cut(s)	28, 163, 239, 670, 734, 748, 1000
Kzo9I	GATC	3 cut(s)	848, 1003, 1036
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	2 cut(s)	156, 799
Lsp1109I	GCAGC	2 cut(s)	518, 940
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	5 cut(s)	48, 459, 725, 921, 1053
MaeIII	GTNAC	2 cut(s)	321, 660
MalI	GATC	3 cut(s)	850, 1005, 1038
MboI	GATC	3 cut(s)	848, 1003, 1036
MboII	GAAGA	8 cut(s)	365, 444, 447, 455, 641, 660, 779, 827
MfeI	CAATTG	2 cut(s)	150, 821
MhlI	GDGCHC	3 cut(s)	137, 450, 1029
MlsI	TGGCCA	1 cut(s)	938
MluCI	AATT	7 cut(s)	150, 222, 587, 821, 827, 882, 1069
MluNI	TGGCCA	1 cut(s)	938
MlyI	GAGTC	1 cut(s)	971
MnlI	CCTC	7 cut(s)	299, 495, 567, 638, 691, 748, 763
Mox20I	TGGCCA	1 cut(s)	938
Mph1103I	ATGCAT	1 cut(s)	736
MscI	TGGCCA	1 cut(s)	938
MseI	TTAA	1 cut(s)	737
MslI	CAYNNNNRTG	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	938
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	5 cut(s)	329, 399, 489, 503, 622
MunI	CAATTG	2 cut(s)	150, 821
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	4 cut(s)	399, 489, 503, 622
MwoI	GCNNNNNNNGC	3 cut(s)	236, 445, 561
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	3 cut(s)	848, 1003, 1036
NlaIII	CATG	7 cut(s)	28, 163, 239, 670, 734, 748, 1000
NmuCI	GTSAC	2 cut(s)	321, 660
NsiI	ATGCAT	1 cut(s)	736
NspI	RCATGY	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	1 cut(s)	1026
PctI	GAATGC	1 cut(s)	332
PfeI	GAWTC	3 cut(s)	369, 782, 974
PkrI	GCNGC	3 cut(s)	12, 508, 930
PleI	GAGTC	1 cut(s)	970
PpsI	GAGTC	1 cut(s)	970
PshBI	ATTAAT	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	1029
Psp6I	CCWGG	4 cut(s)	397, 487, 501, 620
PspGI	CCWGG	4 cut(s)	397, 487, 501, 620
PspPI	GGNCC	2 cut(s)	191, 862
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	3 cut(s)	120, 800, 1019
RsaNI	GTAC	3 cut(s)	119, 799, 1018
RseI	CAYNNNNRTG	1 cut(s)	317
SacI	GAGCTC	1 cut(s)	1029
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	1 cut(s)	737
SatI	GCNGC	3 cut(s)	11, 507, 929
Sau3AI	GATC	3 cut(s)	848, 1003, 1036
Sau96I	GGNCC	2 cut(s)	191, 862
SchI	GAGTC	1 cut(s)	971
ScrFI	CCNGG	5 cut(s)	329, 399, 489, 503, 622
SduI	GDGCHC	3 cut(s)	137, 450, 1029
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	2 cut(s)	191, 862
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	3 cut(s)	477, 614, 696
SmoI	CTYRAG	3 cut(s)	477, 614, 696
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	7 cut(s)	150, 222, 587, 821, 827, 882, 1069
SsiI	CCGC	2 cut(s)	390, 865
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	5 cut(s)	48, 459, 725, 921, 1053
SstI	GAGCTC	1 cut(s)	1029
StyD4I	CCNGG	5 cut(s)	327, 397, 487, 501, 620
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	70, 946
TaqI	TCGA	1 cut(s)	965
TasI	AATT	7 cut(s)	150, 222, 587, 821, 827, 882, 1069
TatI	WGTACW	1 cut(s)	118
TfiI	GAWTC	3 cut(s)	369, 782, 974
Tru1I	TTAA	1 cut(s)	737
Tru9I	TTAA	1 cut(s)	737
TseFI	GTSAC	2 cut(s)	321, 660
TseI	GCWGC	3 cut(s)	10, 506, 928
Tsp45I	GTSAC	2 cut(s)	321, 660
TspDTI	ATGAA	4 cut(s)	41, 126, 455, 774
TspGWI	ACGGA	2 cut(s)	79, 786
VneI	GTGCAC	1 cut(s)	446
VpaK11BI	GGWCC	2 cut(s)	191, 862
VspI	ATTAAT	1 cut(s)	737
XapI	RAATTY	1 cut(s)	827
XbaI	TCTAGA	1 cut(s)	1052
XceI	RCATGY	1 cut(s)	239
XspI	CTAG	5 cut(s)	48, 459, 725, 921, 1053
Zsp2I	ATGCAT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.