Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Forward (+)

7964783 .. 7966853

Gene Structure 2071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011248

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAAGTGAAGCAAATACTTCACATGAACAAAGGGGATGACGGAACTAGTTACGCCAAAAATTCCAAAATTCAGTGCAAAATACTATCCATAACAAAGCCAATCATTGAGGAAACAGTACTGAAAATCTTGGGTTCAGATCTTGTGCCAAAACAAAGTTTTGGCATAACAGATTTGGGTTGCTCATCTGGACCAAACTCCTTGTTACTCATTTCAGAGGTCATGGATGTCATACATGCTGAGTACAGTCGCCTGAGCCAGCCAAACCTCCAGCTCCAGTCATCCACACGGGAGTTTAGAGTGTATCTCAATGACCTCTTTAGCAACGACTTCAACACCATTTTCGTGTCACTGCCAGTGTTCTACGACAAGTTCAAGCAAGACTTCAAGGATACTACTACTAGCGAGGGGCCGAATCTCTTTATTTCTGCTGTGCCTGGTTCTTTTTATGGTAGACTATTTCCCACCAAGAGCTTGCACTTTGTTCACTCTTCCTCTAGTCTTCACTGGCTCTCCCAGGTTCCTCCTGGATTAGATACAGCCTTGAACAAGGGGAAGATCTACATATCAAAGGGCAGCCCAGAATGTGTGAAGGAGGCATATTCACAGCAATTCCACGAGGACTTTTCTGTGTTTCTAAAGTCTCGCGCTGAAGAAATTGTATCCGGAGGACGAATGGGCTCTATTGAAGAAGAAAAAGTTGAATCGTTCCATGCTCCCTACTATGCTCCATGTCCGGACGAATTGAATTTGCAGTTACAAAAAGAAGGATCATTCGTAATGGACCGCCTTGAAGCATTCGAAATTGATTGGGATGGTGGTGCTGATCTGGATGAAAACACGAATAACACAACCAATGAAACCGTATCAAGCAGTGGCGAGCGAGTAGCCAAGACCATAAGGGCCGTGGTGGAGTCAATGCTCCAGTCTCATTTTGGTGAAGATCTTATGATGGATACTTTGTTTCAGAGGTACGCAGAGCTCGTCAGCGATCGCTTGTCAAAATCTAGAACCAAGTACATCAACTTGGTCTTTTCACTCATTAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

351

Amino Acids

39.36

Weight (kDa)

5.21

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	50 - 226	4.3e-70	SAM dependent carboxyl methyltransferase
Methyltransf_7	PF03492	227 - 349	8e-29	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	454
AccII	CGCG	1 cut(s)	648
AccIII	TCCGGA	2 cut(s)	665, 736
AciI	CCGC	1 cut(s)	787
AclWI	GGATC	1 cut(s)	778
AcsI	RAATTY	3 cut(s)	61, 69, 748
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	4 cut(s)	120, 245, 974, 1019
AgsI	TTSAA	8 cut(s)	334, 376, 388, 547, 689, 704, 748, 794
AhlI	ACTAGT	1 cut(s)	47
AjnI	CCWGG	3 cut(s)	436, 516, 526
AluBI	AGCT	3 cut(s)	274, 474, 982
AluI	AGCT	3 cut(s)	274, 474, 982
Alw21I	GWGCWC	1 cut(s)	984
Alw26I	GTCTC	2 cut(s)	648, 933
AlwI	GGATC	1 cut(s)	778
Aor13HI	TCCGGA	2 cut(s)	665, 736
AoxI	GGCC	2 cut(s)	410, 903
ApeKI	GCWGC	1 cut(s)	576
ApoI	RAATTY	3 cut(s)	61, 69, 748
AsiSI	GCGATCGC	1 cut(s)	994
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	4 cut(s)	191, 410, 784, 903
AsuHPI	GGTGA	1 cut(s)	950
AsuII	TTCGAA	1 cut(s)	801
AvaII	GGWCC	2 cut(s)	191, 784
BanII	GRGCYC	2 cut(s)	683, 984
BauI	CACGAG	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	984
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	2 cut(s)	809, 946
BceAI	ACGGC	1 cut(s)	890
BciT130I	CCWGG	3 cut(s)	438, 518, 528
BciVI	GTATCC	3 cut(s)	385, 673, 949
BcoDI	GTCTC	2 cut(s)	648, 933
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	4 cut(s)	48, 402, 498, 1008
BfuI	GTATCC	3 cut(s)	385, 673, 949
BglII	AGATCT	3 cut(s)	139, 558, 943
BisI	GCNGC	1 cut(s)	577
BlsI	GCNGC	1 cut(s)	578
BmcAI	AGTACT	1 cut(s)	120
Bme1390I	CCNGG	3 cut(s)	438, 518, 528
Bme18I	GGWCC	2 cut(s)	191, 784
BmgT120I	GGNCC	4 cut(s)	191, 410, 784, 903
BmiI	GGNNCC	2 cut(s)	411, 522
BmrFI	CCNGG	3 cut(s)	438, 518, 528
BpiI	GAAGAC	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
BpmI	CTGGAG	3 cut(s)	254, 260, 908
Bpu10I	CCTNAGC	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	801
BsaJI	CCNNGG	2 cut(s)	516, 906
BsaWI	WCCGGW	2 cut(s)	665, 736
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bse1I	ACTGG	4 cut(s)	277, 356, 512, 925
BseAI	TCCGGA	2 cut(s)	665, 736
BseBI	CCWGG	3 cut(s)	438, 518, 528
BseDI	CCNNGG	2 cut(s)	516, 906
BseGI	GGATG	5 cut(s)	43, 232, 281, 820, 838
BseMII	CTCAG	2 cut(s)	231, 245
BseNI	ACTGG	4 cut(s)	277, 356, 512, 925
BseXI	GCAGC	1 cut(s)	588
Bsh1236I	CGCG	1 cut(s)	648
Bsh1285I	CGRYCG	1 cut(s)	994
BshFI	GGCC	2 cut(s)	412, 905
BsiEI	CGRYCG	1 cut(s)	994
BsiHKAI	GWGCWC	1 cut(s)	984
BsiSI	CCGG	2 cut(s)	666, 737
BsmAI	GTCTC	2 cut(s)	648, 933
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	2 cut(s)	412, 905
Bsp119I	TTCGAA	1 cut(s)	801
Bsp1286I	GDGCHC	2 cut(s)	683, 984
Bsp13I	TCCGGA	2 cut(s)	665, 736
Bsp143I	GATC	6 cut(s)	139, 558, 770, 826, 943, 991
BspACI	CCGC	1 cut(s)	787
BspANI	GGCC	2 cut(s)	412, 905
BspCNI	CTCAG	2 cut(s)	232, 246
BspEI	TCCGGA	2 cut(s)	665, 736
BspFNI	CGCG	1 cut(s)	648
BspLI	GGNNCC	2 cut(s)	411, 522
BspPI	GGATC	1 cut(s)	778
BspT104I	TTCGAA	1 cut(s)	801
BsrI	ACTGG	4 cut(s)	277, 356, 512, 925
BssECI	CCNNGG	2 cut(s)	516, 906
BssMI	GATC	6 cut(s)	139, 558, 770, 826, 943, 991
BssSI	CACGAG	1 cut(s)	617
Bst2BI	CACGAG	1 cut(s)	617
Bst2UI	CCWGG	3 cut(s)	438, 518, 528
Bst4CI	ACNGT	3 cut(s)	118, 248, 865
Bst6I	CTCTTC	1 cut(s)	496
BstBI	TTCGAA	1 cut(s)	801
BstC8I	GCNNGC	3 cut(s)	260, 476, 881
BstDEI	CTNAG	2 cut(s)	240, 254
BstDSI	CCRYGG	1 cut(s)	906
BstF5I	GGATG	5 cut(s)	43, 232, 281, 820, 838
BstFNI	CGCG	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	6 cut(s)	142, 561, 773, 829, 946, 994
BstMAI	GTCTC	2 cut(s)	648, 933
BstMBI	GATC	6 cut(s)	139, 558, 770, 826, 943, 991
BstMCI	CGRYCG	1 cut(s)	994
BstNI	CCWGG	3 cut(s)	438, 518, 528
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	3 cut(s)	436, 516, 526
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	3 cut(s)	139, 558, 943
BstYI	RGATCY	3 cut(s)	139, 558, 943
BsuI	GTATCC	3 cut(s)	385, 673, 949
BsuRI	GGCC	2 cut(s)	412, 905
BtgI	CCRYGG	1 cut(s)	906
BtsCI	GGATG	5 cut(s)	43, 232, 281, 820, 838
BtsI	GCAGTG	2 cut(s)	350, 880
BtsIMutI	CAGTG	5 cut(s)	80, 350, 363, 505, 880
Cac8I	GCNNGC	3 cut(s)	260, 476, 881
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	4 cut(s)	191, 410, 784, 903
Csp6I	GTAC	4 cut(s)	119, 244, 973, 1018
CviAII	CATG	5 cut(s)	25, 223, 236, 713, 732
CviQI	GTAC	4 cut(s)	119, 244, 973, 1018
DdeI	CTNAG	2 cut(s)	240, 254
DpnI	GATC	6 cut(s)	141, 560, 772, 828, 945, 993
DpnII	GATC	6 cut(s)	139, 558, 770, 826, 943, 991
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Ecl136II	GAGCTC	1 cut(s)	982
Eco24I	GRGCYC	2 cut(s)	683, 984
Eco47I	GGWCC	2 cut(s)	191, 784
Eco53kI	GAGCTC	1 cut(s)	982
Eco57I	CTGAAG	1 cut(s)	672
EcoICRI	GAGCTC	1 cut(s)	982
EcoRII	CCWGG	3 cut(s)	436, 516, 526
EcoT38I	GRGCYC	2 cut(s)	683, 984
FaeI	CATG	5 cut(s)	28, 226, 239, 716, 735
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	5 cut(s)	24, 222, 235, 712, 731
FblI	GTMKAC	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	577
FokI	GGATG	5 cut(s)	50, 239, 268, 827, 845
FriOI	GRGCYC	2 cut(s)	683, 984
Fsp4HI	GCNGC	1 cut(s)	577
FspBI	CTAG	4 cut(s)	48, 402, 498, 1008
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	1 cut(s)	577
GsuI	CTGGAG	3 cut(s)	254, 260, 908
HaeIII	GGCC	2 cut(s)	412, 905
HapII	CCGG	2 cut(s)	666, 737
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	5 cut(s)	28, 226, 239, 716, 735
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	3 cut(s)	415, 704, 914
HpaII	CCGG	2 cut(s)	666, 737
HphI	GGTGA	1 cut(s)	950
Hpy166II	GTNNAC	2 cut(s)	455, 487
Hpy188I	TCNGA	3 cut(s)	139, 217, 969
Hpy188III	TCNNGA	5 cut(s)	189, 666, 737, 830, 1008
Hpy8I	GTNNAC	2 cut(s)	455, 487
HpyAV	CCTTC	2 cut(s)	586, 761
HpyCH4III	ACNGT	3 cut(s)	118, 248, 865
HpyCH4V	TGCA	3 cut(s)	78, 478, 754
HpyF3I	CTNAG	2 cut(s)	240, 254
Hsp92II	CATG	5 cut(s)	28, 226, 239, 716, 735
HspAI	GCGC	1 cut(s)	648
Kpn2I	TCCGGA	2 cut(s)	665, 736
Kzo9I	GATC	6 cut(s)	139, 558, 770, 826, 943, 991
LmnI	GCTCC	4 cut(s)	279, 721, 733, 927
Lsp1109I	GCAGC	1 cut(s)	588
MaeI	CTAG	4 cut(s)	48, 402, 498, 1008
MaeIII	GTNAC	4 cut(s)	50, 204, 348, 756
MalI	GATC	6 cut(s)	141, 560, 772, 828, 945, 993
MboI	GATC	6 cut(s)	139, 558, 770, 826, 943, 991
MboII	GAAGA	7 cut(s)	483, 494, 568, 665, 701, 704, 953
MflI	RGATCY	3 cut(s)	139, 558, 943
MhlI	GDGCHC	2 cut(s)	683, 984
MluCI	AATT	7 cut(s)	61, 69, 611, 657, 743, 748, 804
MlyI	GAGTC	1 cut(s)	923
MroI	TCCGGA	2 cut(s)	665, 736
MseI	TTAA	1 cut(s)	1044
MslI	CAYNNNNRTG	2 cut(s)	344, 936
MspI	CCGG	2 cut(s)	666, 737
MspR9I	CCNGG	3 cut(s)	438, 518, 528
Mva1269I	GAATGC	1 cut(s)	797
MvaI	CCWGG	3 cut(s)	438, 518, 528
MvnI	CGCG	1 cut(s)	648
NdeII	GATC	6 cut(s)	139, 558, 770, 826, 943, 991
NlaIII	CATG	5 cut(s)	28, 226, 239, 716, 735
NlaIV	GGNNCC	2 cut(s)	411, 522
NmuCI	GTSAC	1 cut(s)	348
NspI	RCATGY	1 cut(s)	239
NspV	TTCGAA	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	1 cut(s)	981
PctI	GAATGC	1 cut(s)	797
PfeI	GAWTC	2 cut(s)	415, 704
PfoI	TCCNGGA	1 cut(s)	526
PkrI	GCNGC	1 cut(s)	578
Ple19I	CGATCG	1 cut(s)	994
PleI	GAGTC	1 cut(s)	922
PpsI	GAGTC	1 cut(s)	922
Psp124BI	GAGCTC	1 cut(s)	984
Psp6I	CCWGG	3 cut(s)	436, 516, 526
PspGI	CCWGG	3 cut(s)	436, 516, 526
PspN4I	GGNNCC	2 cut(s)	411, 522
PspPI	GGNCC	4 cut(s)	191, 410, 784, 903
PsuI	RGATCY	3 cut(s)	139, 558, 943
PvuI	CGATCG	1 cut(s)	994
RgaI	GCGATCGC	1 cut(s)	994
RsaI	GTAC	4 cut(s)	120, 245, 974, 1019
RsaNI	GTAC	4 cut(s)	119, 244, 973, 1018
RseI	CAYNNNNRTG	2 cut(s)	344, 936
SacI	GAGCTC	1 cut(s)	984
SaqAI	TTAA	1 cut(s)	1044
SatI	GCNGC	1 cut(s)	577
Sau3AI	GATC	6 cut(s)	139, 558, 770, 826, 943, 991
Sau96I	GGNCC	4 cut(s)	191, 410, 784, 903
ScaI	AGTACT	1 cut(s)	120
SchI	GAGTC	1 cut(s)	923
ScrFI	CCNGG	3 cut(s)	438, 518, 528
SduI	GDGCHC	2 cut(s)	683, 984
SetI	ASST	8 cut(s)	222, 270, 276, 318, 476, 522, 974, 984
SfaAI	GCGATCGC	1 cut(s)	994
SfuI	TTCGAA	1 cut(s)	801
SgfI	GCGATCGC	1 cut(s)	994
SinI	GGWCC	2 cut(s)	191, 784
SmiMI	CAYNNNNRTG	2 cut(s)	344, 936
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	7 cut(s)	61, 69, 611, 657, 743, 748, 804
SsiI	CCGC	1 cut(s)	787
SspMI	CTAG	4 cut(s)	48, 402, 498, 1008
SstI	GAGCTC	1 cut(s)	984
StyD4I	CCNGG	3 cut(s)	436, 516, 526
TaaI	ACNGT	3 cut(s)	118, 248, 865
TaqI	TCGA	1 cut(s)	801
TasI	AATT	7 cut(s)	61, 69, 611, 657, 743, 748, 804
TatI	WGTACW	3 cut(s)	118, 243, 1017
TfiI	GAWTC	2 cut(s)	415, 704
Tru1I	TTAA	1 cut(s)	1044
Tru9I	TTAA	1 cut(s)	1044
TscAI	CASTG	5 cut(s)	80, 357, 363, 512, 880
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	1 cut(s)	576
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	3 cut(s)	41, 849, 873
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	5 cut(s)	80, 357, 363, 512, 880
VpaK11BI	GGWCC	2 cut(s)	191, 784
XapI	RAATTY	3 cut(s)	61, 69, 748
XbaI	TCTAGA	1 cut(s)	1007
XceI	RCATGY	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	3 cut(s)	524, 904, 932
XmiI	GTMKAC	1 cut(s)	454
XspI	CTAG	4 cut(s)	48, 402, 498, 1008
ZrmI	AGTACT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.