Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8452201.1

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Forward (+)

889 .. 1281

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8452201.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggttgattccttcgacatgccctactatacttcatgtgcggaggagttgtgtttggtgttacaaaaagaagggtctttcatcaaggaccgccttgaagcattcgaagtgaattgggatactggtgctgctgatctcgatcacaacatgcctaacgttaggcctaacggtgcatttggcgttgatcatacaataacaagcagcgggcagcgagtggccaatagcataagaatcgtggctgagtcaatgcttaaatctcattttggcaaagagataacaagcagcggccagtgggtgtttcagaaatatgcagagctcgttagcatgcacttgtcaaatagtaccagacccaattatacggtgttggtcatttcactcgttaaaaagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

130

Amino Acids

14.56

Weight (kDa)

5.75

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	41, 91, 204, 285
AclI	AACGTT	1 cut(s)	156
AcoI	YGGCCR	2 cut(s)	216, 286
AfaI	GTAC	1 cut(s)	343
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw21I	GWGCWC	1 cut(s)	318
AoxI	GGCC	3 cut(s)	161, 216, 286
ApeKI	GCWGC	4 cut(s)	128, 201, 208, 282
AspS9I	GGNCC	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	115, 213, 220, 294
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciVI	GTATCC	1 cut(s)	112
BclI	TGATCA	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	5 cut(s)	129, 202, 209, 283, 286
BlsI	GCNGC	5 cut(s)	130, 203, 210, 284, 287
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
Bpu14I	TTCGAA	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bse1I	ACTGG	2 cut(s)	127, 289
Bse8I	GATNNNNATC	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	127, 289
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	4 cut(s)	115, 213, 220, 294
BshFI	GGCC	3 cut(s)	163, 218, 288
BsiHKAI	GWGCWC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	163, 218, 288
Bsp119I	TTCGAA	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	133, 139, 184
BspACI	CCGC	4 cut(s)	41, 91, 204, 285
BspANI	GGCC	3 cut(s)	163, 218, 288
BspCNI	CTCAG	1 cut(s)	232
BspT104I	TTCGAA	1 cut(s)	105
BsrI	ACTGG	2 cut(s)	127, 289
BssMI	GATC	3 cut(s)	133, 139, 184
Bst4CI	ACNGT	2 cut(s)	170, 361
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	206, 326
BstDEI	CTNAG	1 cut(s)	240
BstKTI	GATC	3 cut(s)	136, 142, 187
BstMBI	GATC	3 cut(s)	133, 139, 184
BstNSI	RCATGY	3 cut(s)	22, 151, 328
BstV1I	GCAGC	4 cut(s)	115, 213, 220, 294
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	163, 218, 288
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	206, 326
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	4 cut(s)	19, 36, 148, 325
CviJI	RGCY	5 cut(s)	163, 218, 239, 288, 316
CviKI_1	RGCY	5 cut(s)	163, 218, 239, 288, 316
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	3 cut(s)	135, 141, 186
DpnII	GATC	3 cut(s)	133, 139, 184
EaeI	YGGCCR	2 cut(s)	216, 286
Ecl136II	GAGCTC	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	4 cut(s)	22, 39, 151, 328
FaiI	YATR	9 cut(s)	20, 30, 37, 149, 189, 227, 309, 326, 357
FatI	CATG	4 cut(s)	18, 35, 147, 324
FauI	CCCGC	1 cut(s)	197
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	5 cut(s)	129, 202, 209, 283, 286
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	5 cut(s)	129, 202, 209, 283, 286
GluI	GCNGC	5 cut(s)	129, 202, 209, 283, 286
HaeIII	GGCC	3 cut(s)	163, 218, 288
Hin1II	CATG	4 cut(s)	22, 39, 151, 328
HinfI	GANTC	3 cut(s)	8, 231, 242
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	22, 65
HpyCH4III	ACNGT	2 cut(s)	170, 361
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	173, 311, 328
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	4 cut(s)	22, 39, 151, 328
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	133, 139, 184
LpnPI	CCDG	3 cut(s)	108, 302, 358
Lsp1109I	GCAGC	4 cut(s)	115, 213, 220, 294
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	3 cut(s)	135, 141, 186
MboI	GATC	3 cut(s)	133, 139, 184
MhlI	GDGCHC	1 cut(s)	318
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	2 cut(s)	112, 352
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	1 cut(s)	37
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	2 cut(s)	252, 381
Msp20I	TGGCCA	1 cut(s)	218
MspA1I	CMGCKG	2 cut(s)	204, 285
Mva1269I	GAATGC	1 cut(s)	101
NdeII	GATC	3 cut(s)	133, 139, 184
NlaIII	CATG	4 cut(s)	22, 39, 151, 328
NspI	RCATGY	3 cut(s)	22, 151, 328
NspV	TTCGAA	1 cut(s)	105
PaeI	GCATGC	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	163
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	8, 231
PkrI	GCNGC	5 cut(s)	130, 203, 210, 284, 287
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	88
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	252, 381
SatI	GCNGC	5 cut(s)	129, 202, 209, 283, 286
Sau3AI	GATC	3 cut(s)	133, 139, 184
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	2 cut(s)	159, 318
SfuI	TTCGAA	1 cut(s)	105
SinI	GGWCC	1 cut(s)	88
SphI	GCATGC	1 cut(s)	328
Sse9I	AATT	2 cut(s)	112, 352
SseBI	AGGCCT	1 cut(s)	163
SsiI	CCGC	4 cut(s)	41, 91, 204, 285
SstI	GAGCTC	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	170, 361
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	15, 105, 138
TasI	AATT	2 cut(s)	112, 352
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	8, 231
Tru1I	TTAA	2 cut(s)	252, 381
Tru9I	TTAA	2 cut(s)	252, 381
TscAI	CASTG	1 cut(s)	296
TseI	GCWGC	4 cut(s)	128, 201, 208, 282
TspDTI	ATGAA	2 cut(s)	24, 70
TspRI	CASTG	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	88
XceI	RCATGY	3 cut(s)	22, 151, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.