RLG00000006093

Jasmonate O-methyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001051
Physical Location & Seq
Forward (+)
4309473 .. 4311039
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006093

Sequence Viewer

Length: 996 bp
ATGGGAATAGAGAGCATGGGAATAGCAGATTTGGGTTGCTCATCCGGACCCAACACCTTACTACTCATCTCGCAGATCATGGATGCCATACATGCTAAACCTAGCAAAGTTACAGAGCTTAGAGTGTTTCTAAATGACCTCTTTAGCAACGACTTCAACTCCATCTTCATGTCACTCCCATCATTCTACAACAAACTGAAACAAGACTATGATAATAGTCGTGATCCCGATCAGCATGTCATAAATCCGTTGATTTCTGCTGTGCCCGGTTCGTTTTACGGTCCATTGTTTCCCAGAAGGAGCATGCACTTTGTTCATTCTTCTTTTAGTCTTCACTGGCTCTCTCAGGTGCCCGATGGCCTAAACAACAAAGGCAAGATTTACATTTCTAAGAGCAGCCCACAGTGTGTGTTGGATGCATACTCCATGCAGTTTCAGAAAGACTTTTCGGTTTTTCTGAGGTCTAGGGCACAAGAAATAGTTAACGGAGGTCGAATGGTGTTGTCCTTCTTGGGCAGGCCATCCTCTGACCCCACAGCTGATCAGGGCACTTTCTACCAGTTGGAGCTCTTAGCCCACGCATTAATGGACATGGTGTCCAAGGGTCTTATAAAAGAGGAAATGGTTGATTCCTTCAACGTGCCCTACTATACTCCATGTGCAGAGGAATTGAATTTGGTATTACAAAAAGAAGGGTCTTTCGTCAAGGACCGCCTTGAGGCATTCGAAGTGAATTGGGATACTGGTGCTGCTGATCTCGATCACAACATGCCTAACGGTGCATTTGACCATGATCAAACAATAACAAGCAGTGGGCAGCGAGTGGCCAATAGCATAAGAGTCGTGGGCGAGTCAATGCTCGAATCTCATTTGGGAAAAGAAATAATGGATGAGGTGTTTAAGAAATATACAGAGCTCGTTAGCAAGCACTTATCAAATAGTACTACTAGACCCAAGTATACAGTTTTGGTCACCTCACTCATTCGAAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

332

Amino Acids

37.12

Weight (kDa)

5.8

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 4 - 329 3e-114 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 349
AccI GTMKAC 1 cut(s) 959
AccIII TCCGGA 1 cut(s) 44
AciI CCGC 1 cut(s) 712
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 1 cut(s) 673
AdeI CACNNNGTG 1 cut(s) 407
AfaI GTAC 1 cut(s) 943
AfiI CCNNNNNNNGG 1 cut(s) 718
AgsI TTSAA 3 cut(s) 157, 637, 673
AhdI GACNNNNNGTC 1 cut(s) 595
AluBI AGCT 4 cut(s) 118, 539, 568, 916
AluI AGCT 4 cut(s) 118, 539, 568, 916
Alw21I GWGCWC 2 cut(s) 570, 918
AlwI GGATC 1 cut(s) 218
Aor13HI TCCGGA 1 cut(s) 44
AoxI GGCC 3 cut(s) 358, 518, 825
ApeKI GCWGC 3 cut(s) 396, 749, 817
ApoI RAATTY 1 cut(s) 673
AseI ATTAAT 1 cut(s) 584
AspS9I GGNCC 3 cut(s) 47, 281, 709
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 964
AsuII TTCGAA 2 cut(s) 726, 985
AvaII GGWCC 3 cut(s) 47, 281, 709
BaeGI GKGCMC 5 cut(s) 267, 354, 472, 551, 645
BalI TGGCCA 1 cut(s) 827
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 2 cut(s) 570, 918
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 2 cut(s) 570, 918
BbvI GCAGC 3 cut(s) 408, 736, 829
BccI CCATC 4 cut(s) 170, 187, 350, 529
BcgI CGANNNNNNTGC 2 cut(s) 823, 857
BciVI GTATCC 1 cut(s) 733
BclI TGATCA 2 cut(s) 541, 793
BcnI CCSGG 1 cut(s) 267
BfaI CTAG 3 cut(s) 102, 465, 948
BfuI GTATCC 1 cut(s) 733
BisI GCNGC 3 cut(s) 397, 750, 818
BlsI GCNGC 3 cut(s) 398, 751, 819
BmcAI AGTACT 1 cut(s) 943
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 3 cut(s) 47, 281, 709
BmeRI GACNNNNNGTC 1 cut(s) 595
BmgT120I GGNCC 3 cut(s) 47, 281, 709
BmiI GGNNCC 2 cut(s) 49, 351
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 73, 406
BpiI GAAGAC 1 cut(s) 323
Bpu14I TTCGAA 2 cut(s) 726, 985
BpuEI CTTGAG 1 cut(s) 737
BpuMI CCSGG 1 cut(s) 267
BsaBI GATNNNNATC 2 cut(s) 228, 759
BsaJI CCNNGG 1 cut(s) 600
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse1I ACTGG 3 cut(s) 341, 559, 748
Bse8I GATNNNNATC 2 cut(s) 228, 759
BseAI TCCGGA 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 5 cut(s) 41, 88, 421, 521, 895
BseJI GATNNNNATC 2 cut(s) 228, 759
BseLI CCNNNNNNNGG 1 cut(s) 718
BseMII CTCAG 2 cut(s) 359, 449
BseNI ACTGG 3 cut(s) 341, 559, 748
BseSI GKGCMC 5 cut(s) 267, 354, 472, 551, 645
BseXI GCAGC 3 cut(s) 408, 736, 829
BsgI GTGCAG 1 cut(s) 681
BshFI GGCC 3 cut(s) 360, 520, 827
BshNI GGYRCC 1 cut(s) 349
BsiHKAI GWGCWC 2 cut(s) 570, 918
BsiSI CCGG 2 cut(s) 45, 267
BslI CCNNNNNNNGG 1 cut(s) 718
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 3 cut(s) 360, 520, 827
Bsp119I TTCGAA 2 cut(s) 726, 985
Bsp1286I GDGCHC 7 cut(s) 267, 354, 472, 551, 570, 645, 918
Bsp13I TCCGGA 1 cut(s) 44
Bsp143I GATC 7 cut(s) 75, 223, 229, 541, 754, 760, 793
BspACI CCGC 1 cut(s) 712
BspANI GGCC 3 cut(s) 360, 520, 827
BspCNI CTCAG 2 cut(s) 358, 450
BspEI TCCGGA 1 cut(s) 44
BspLI GGNNCC 2 cut(s) 49, 351
BspPI GGATC 1 cut(s) 218
BspT104I TTCGAA 2 cut(s) 726, 985
BspT107I GGYRCC 1 cut(s) 349
BsrI ACTGG 3 cut(s) 341, 559, 748
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 7 cut(s) 75, 223, 229, 541, 754, 760, 793
BssNAI GTATAC 1 cut(s) 960
BssT1I CCWWGG 1 cut(s) 600
Bst1107I GTATAC 1 cut(s) 960
Bst4CI ACNGT 4 cut(s) 281, 405, 779, 964
BstBI TTCGAA 2 cut(s) 726, 985
BstC8I GCNNGC 3 cut(s) 305, 518, 926
BstDEI CTNAG 5 cut(s) 119, 345, 390, 458, 571
BstEII GGTNACC 1 cut(s) 970
BstF5I GGATG 5 cut(s) 41, 88, 421, 521, 895
BstKTI GATC 7 cut(s) 78, 226, 232, 544, 757, 763, 796
BstMBI GATC 7 cut(s) 75, 223, 229, 541, 754, 760, 793
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNSI RCATGY 4 cut(s) 95, 239, 307, 772
BstPI GGTNACC 1 cut(s) 970
BstSCI CCNGG 1 cut(s) 265
BstSLI GKGCMC 5 cut(s) 267, 354, 472, 551, 645
BstV1I GCAGC 3 cut(s) 408, 736, 829
BstV2I GAAGAC 1 cut(s) 323
BstZ17I GTATAC 1 cut(s) 960
BsuI GTATCC 1 cut(s) 733
BsuRI GGCC 3 cut(s) 360, 520, 827
BtsCI GGATG 5 cut(s) 41, 88, 421, 521, 895
BtsI GCAGTG 1 cut(s) 817
BtsIMutI CAGTG 3 cut(s) 334, 410, 817
Cac8I GCNNGC 3 cut(s) 305, 518, 926
Cfr13I GGNCC 3 cut(s) 47, 281, 709
Csp6I GTAC 1 cut(s) 942
CviQI GTAC 1 cut(s) 942
DdeI CTNAG 5 cut(s) 119, 345, 390, 458, 571
DpnI GATC 7 cut(s) 77, 225, 231, 543, 756, 762, 795
DpnII GATC 7 cut(s) 75, 223, 229, 541, 754, 760, 793
DraIII CACNNNGTG 1 cut(s) 407
DriI GACNNNNNGTC 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 825
Eam1105I GACNNNNNGTC 1 cut(s) 595
Ecl136II GAGCTC 2 cut(s) 568, 916
Eco130I CCWWGG 1 cut(s) 600
Eco24I GRGCYC 2 cut(s) 570, 918
Eco47I GGWCC 3 cut(s) 47, 281, 709
Eco53kI GAGCTC 2 cut(s) 568, 916
Eco91I GGTNACC 1 cut(s) 970
EcoICRI GAGCTC 2 cut(s) 568, 916
EcoO65I GGTNACC 1 cut(s) 970
EcoT14I CCWWGG 1 cut(s) 600
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 2 cut(s) 570, 918
ErhI CCWWGG 1 cut(s) 600
FbaI TGATCA 2 cut(s) 541, 793
FblI GTMKAC 1 cut(s) 959
Fnu4HI GCNGC 3 cut(s) 397, 750, 818
FokI GGATG 5 cut(s) 28, 95, 428, 508, 902
FriOI GRGCYC 2 cut(s) 570, 918
Fsp4HI GCNGC 3 cut(s) 397, 750, 818
FspBI CTAG 3 cut(s) 102, 465, 948
GluI GCNGC 3 cut(s) 397, 750, 818
HaeIII GGCC 3 cut(s) 360, 520, 827
HapII CCGG 2 cut(s) 45, 267
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 4 cut(s) 629, 840, 851, 863
HpaI GTTAAC 1 cut(s) 484
HpaII CCGG 2 cut(s) 45, 267
HphI GGTGA 1 cut(s) 964
Hpy166II GTNNAC 2 cut(s) 484, 960
Hpy188I TCNGA 3 cut(s) 438, 459, 529
Hpy188III TCNNGA 4 cut(s) 45, 221, 227, 758
Hpy8I GTNNAC 2 cut(s) 484, 960
HpyAV CCTTC 4 cut(s) 291, 517, 643, 686
HpyCH4III ACNGT 4 cut(s) 281, 405, 779, 964
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 5 cut(s) 307, 419, 430, 662, 782
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 5 cut(s) 119, 345, 390, 458, 571
HpySE526I ACGT 1 cut(s) 639
Kpn2I TCCGGA 1 cut(s) 44
Ksp22I TGATCA 2 cut(s) 541, 793
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 7 cut(s) 75, 223, 229, 541, 754, 760, 793
LmnI GCTCC 2 cut(s) 300, 565
LpnPI CCDG 9 cut(s) 58, 280, 307, 322, 332, 502, 530, 572, 729
Lsp1109I GCAGC 3 cut(s) 408, 736, 829
LweI GCATC 2 cut(s) 73, 406
MaeI CTAG 3 cut(s) 102, 465, 948
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 3 cut(s) 109, 171, 970
MalI GATC 7 cut(s) 77, 225, 231, 543, 756, 762, 795
MboI GATC 7 cut(s) 75, 223, 229, 541, 754, 760, 793
MboII GAAGA 3 cut(s) 157, 312, 323
MhlI GDGCHC 7 cut(s) 267, 354, 472, 551, 570, 645, 918
MlsI TGGCCA 1 cut(s) 827
MluCI AATT 3 cut(s) 668, 673, 733
MluNI TGGCCA 1 cut(s) 827
MlyI GAGTC 2 cut(s) 849, 860
MmeI TCCRAC 2 cut(s) 393, 543
MnlI CCTC 9 cut(s) 149, 453, 482, 535, 610, 658, 712, 886, 985
Mox20I TGGCCA 1 cut(s) 827
Mph1103I ATGCAT 1 cut(s) 421
MroI TCCGGA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 827
MseI TTAA 3 cut(s) 483, 584, 900
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 827
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 2 cut(s) 45, 267
MspR9I CCNGG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 722
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 267
NdeII GATC 7 cut(s) 75, 223, 229, 541, 754, 760, 793
NlaIV GGNNCC 2 cut(s) 49, 351
NmuCI GTSAC 2 cut(s) 171, 970
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 4 cut(s) 95, 239, 307, 772
NspV TTCGAA 2 cut(s) 726, 985
PaeI GCATGC 1 cut(s) 307
PctI GAATGC 1 cut(s) 722
PfeI GAWTC 2 cut(s) 629, 863
PkrI GCNGC 3 cut(s) 398, 751, 819
PleI GAGTC 2 cut(s) 848, 859
PpsI GAGTC 2 cut(s) 848, 859
PshBI ATTAAT 1 cut(s) 584
PsiI TTATAA 1 cut(s) 611
Psp124BI GAGCTC 2 cut(s) 570, 918
PspEI GGTNACC 1 cut(s) 970
PspN4I GGNNCC 2 cut(s) 49, 351
PspPI GGNCC 3 cut(s) 47, 281, 709
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 1 cut(s) 943
RsaNI GTAC 1 cut(s) 942
RseI CAYNNNNRTG 1 cut(s) 167
SacI GAGCTC 2 cut(s) 570, 918
SaqAI TTAA 3 cut(s) 483, 584, 900
SatI GCNGC 3 cut(s) 397, 750, 818
Sau3AI GATC 7 cut(s) 75, 223, 229, 541, 754, 760, 793
Sau96I GGNCC 3 cut(s) 47, 281, 709
ScaI AGTACT 1 cut(s) 943
SchI GAGTC 2 cut(s) 849, 860
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 7 cut(s) 267, 354, 472, 551, 570, 645, 918
SfaNI GCATC 2 cut(s) 73, 406
SfuI TTCGAA 2 cut(s) 726, 985
SinI GGWCC 3 cut(s) 47, 281, 709
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
SphI GCATGC 1 cut(s) 307
Sse9I AATT 3 cut(s) 668, 673, 733
SsiI CCGC 1 cut(s) 712
SspMI CTAG 3 cut(s) 102, 465, 948
SstI GAGCTC 2 cut(s) 570, 918
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 4 cut(s) 281, 405, 779, 964
TaiI ACGT 1 cut(s) 642
TaqI TCGA 5 cut(s) 493, 726, 759, 861, 985
TasI AATT 3 cut(s) 668, 673, 733
TatI WGTACW 1 cut(s) 941
TfiI GAWTC 2 cut(s) 629, 863
Tru1I TTAA 3 cut(s) 483, 584, 900
Tru9I TTAA 3 cut(s) 483, 584, 900
TscAI CASTG 3 cut(s) 341, 410, 817
TseFI GTSAC 2 cut(s) 171, 970
TseI GCWGC 3 cut(s) 396, 749, 817
Tsp45I GTSAC 2 cut(s) 171, 970
TspDTI ATGAA 2 cut(s) 157, 305
TspGWI ACGGA 2 cut(s) 237, 501
TspRI CASTG 3 cut(s) 341, 410, 817
VpaK11BI GGWCC 3 cut(s) 47, 281, 709
VspI ATTAAT 1 cut(s) 584
XapI RAATTY 1 cut(s) 673
XceI RCATGY 4 cut(s) 95, 239, 307, 772
XmiI GTMKAC 1 cut(s) 959
XspI CTAG 3 cut(s) 102, 465, 948
ZrmI AGTACT 1 cut(s) 943
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.