FvH4_4g32960

Jasmonate O-methyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001051
Physical Location & Seq
Reverse (-)
31369711 .. 31371115
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32960.t1

Sequence Viewer

Length: 1173 bp
ATGGAGGCGTTGATGACGCAACTCGCGCAAGTGCTTCACATGAACCAAGGCAATGGCGAGACTAGTTATGACAGAAACTCCGCAGTTGGGAGAAAAGCAATATCTATCGCCAAGCCAGTCATTGAGGAAGCGGTACTAAAAATCTTGGGGTCAGATGTCATGGGAATAGAGAGCATGGGGATAGCAGATTTGGGTTGCTCATCTGGACCTAACACCTTCCTACTCATGTCGCACATCATCAATGTCATACATACTAGATTCCGCACCGGTCTTGATCATCCTTCGCCAGTAACGGAGCTTAGAGTGTATCTAAACGACCTCTTTAGCACCGACTTCAACTCCATCTTTATGTCACTCCCATCCTTCTACACCAAATTGAAACAAGACTATGATAATGGTCGTGATTCCTATCAGCATCTCATACATCCCTTGATTTCTGCTGTCCCCGGTTCCTTTTACGGTCCGTTGTTTCCCAGAAAGAACATGCACTTTGTTCACTCATCTTTTAGTCTTCACTGGCTATCTCAGATCTCCGATGGCCTAAACAACAAAGGAAAGATATACATTTCTAAGAGCAGCCCACAGCGTGTGTTGGATGCATACTCCATGCAGTTTCAGAAAGACTTTTCGGTTTTTCTGAGTTCTAGGGCACAAGAAATAGTTAACGGAGGACGAATGGTGTTGTCCTTCCTGGCCAGGCCATCCACTAATCCAACAGCCGAACATGGTATGTACGTCTTGGAGCTCTTAGCCCACGCGTTAATGGCCATGGCTTCCAATGGACTTATCAAAGAGGAAAAGGTTGATTCGTTCAACATGCCTTGCTACGCTCCATGTGCAGAGGAGTTGATAATGGTGTTGCAGAAAGAAGGGTCCTTCATCACGGATCGGCTTGAAGCTTTCGAAGTGGATTGGGACACTGTTGCTCCTGATGATCTCGATCATGATCAAGTTGCATTTGATGATGATGATGATCAAGTAATATTTAGTGGCCAGCAGGTCGCCAATAACATAAGAGTTGTGACAGAGTCAATTCTCGAACCTCATTTTGGAAAAGAGATGATGGATGATCTATTCCAGAAATATGCAGAGGAAGTCAGTAAGCACTTATCCAGCTGTGTTACAAGACCCAAGTACACAGTTCTGGTCATTTCACTCATTAGAAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

391

Amino Acids

43.78

Weight (kDa)

5.27

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 57 - 388 1.9e-110 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 988
AccII CGCG 2 cut(s) 26, 758
AciI CCGC 3 cut(s) 81, 131, 262
AclWI GGATC 1 cut(s) 894
AcoI YGGCCR 3 cut(s) 693, 765, 991
AcsI RAATTY 1 cut(s) 1165
AdeI CACNNNGTG 1 cut(s) 587
AfaI GTAC 3 cut(s) 135, 734, 1136
AfiI CCNNNNNNNGG 2 cut(s) 87, 1049
AflIII ACRYGT 1 cut(s) 756
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 4 cut(s) 337, 379, 814, 896
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 2 cut(s) 690, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 1032, 1064
AluBI AGCT 4 cut(s) 298, 745, 899, 1116
AluI AGCT 4 cut(s) 298, 745, 899, 1116
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 894
AoxI GGCC 5 cut(s) 538, 693, 698, 765, 991
ApeKI GCWGC 1 cut(s) 576
ApoI RAATTY 1 cut(s) 1165
AsiGI ACCGGT 1 cut(s) 266
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 3 cut(s) 206, 461, 873
AsuC2I CCSGG 1 cut(s) 447
AsuII TTCGAA 1 cut(s) 903
AvaII GGWCC 3 cut(s) 206, 461, 873
BaeGI GKGCMC 1 cut(s) 652
BalI TGGCCA 3 cut(s) 695, 767, 993
BanII GRGCYC 1 cut(s) 747
BbsI GAAGAC 1 cut(s) 503
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 1 cut(s) 588
BccI CCATC 5 cut(s) 350, 367, 530, 709, 1057
BciT130I CCWGG 2 cut(s) 692, 697
BclI TGATCA 3 cut(s) 274, 946, 973
BcnI CCSGG 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 53
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 3 cut(s) 63, 255, 645
BfuAI ACCTGC 1 cut(s) 988
BglII AGATCT 1 cut(s) 528
BisI GCNGC 1 cut(s) 577
BlsI GCNGC 1 cut(s) 578
Bme1390I CCNGG 3 cut(s) 447, 692, 697
Bme18I GGWCC 3 cut(s) 206, 461, 873
BmgT120I GGNCC 3 cut(s) 206, 461, 873
BmiI GGNNCC 2 cut(s) 451, 874
BmrFI CCNGG 3 cut(s) 447, 692, 697
BmsI GCATC 2 cut(s) 424, 586
BpiI GAAGAC 1 cut(s) 503
Bpu14I TTCGAA 1 cut(s) 903
BpuMI CCSGG 1 cut(s) 447
BsaBI GATNNNNATC 4 cut(s) 408, 939, 945, 972
BsaJI CCNNGG 3 cut(s) 46, 445, 768
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 6 cut(s) 62, 92, 323, 353, 910, 940
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 1049
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 3 cut(s) 116, 287, 521
Bse3DI GCAATG 1 cut(s) 58
Bse8I GATNNNNATC 4 cut(s) 408, 939, 945, 972
BseBI CCWGG 2 cut(s) 692, 697
BseDI CCNNGG 3 cut(s) 46, 445, 768
BseGI GGATG 6 cut(s) 277, 359, 424, 601, 701, 1072
BseJI GATNNNNATC 4 cut(s) 408, 939, 945, 972
BseLI CCNNNNNNNGG 2 cut(s) 87, 1049
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 539, 629
BseNI ACTGG 3 cut(s) 116, 287, 521
BseRI GAGGAG 1 cut(s) 857
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 1 cut(s) 588
BsgI GTGCAG 1 cut(s) 858
Bsh1236I CGCG 2 cut(s) 26, 758
BshFI GGCC 5 cut(s) 540, 695, 700, 767, 993
BshTI ACCGGT 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 2 cut(s) 267, 447
BslFI GGGAC 2 cut(s) 428, 929
BslI CCNNNNNNNGG 2 cut(s) 87, 1049
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 2 cut(s) 428, 929
BsnI GGCC 5 cut(s) 540, 695, 700, 767, 993
Bsp119I TTCGAA 1 cut(s) 903
Bsp1286I GDGCHC 2 cut(s) 652, 747
Bsp143I GATC 8 cut(s) 274, 528, 886, 934, 940, 946, 973, 1069
Bsp19I CCATGG 1 cut(s) 768
BspACI CCGC 3 cut(s) 81, 131, 262
BspANI GGCC 5 cut(s) 540, 695, 700, 767, 993
BspCNI CTCAG 2 cut(s) 538, 630
BspFNI CGCG 2 cut(s) 26, 758
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 2 cut(s) 451, 874
BspMI ACCTGC 1 cut(s) 988
BspPI GGATC 1 cut(s) 894
BspT104I TTCGAA 1 cut(s) 903
BsrDI GCAATG 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 3 cut(s) 116, 287, 521
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 3 cut(s) 46, 445, 768
BssMI GATC 8 cut(s) 274, 528, 886, 934, 940, 946, 973, 1069
BssT1I CCWWGG 2 cut(s) 46, 768
Bst2UI CCWGG 2 cut(s) 692, 697
Bst4CI ACNGT 3 cut(s) 461, 922, 1141
BstBI TTCGAA 1 cut(s) 903
BstC8I GCNNGC 1 cut(s) 995
BstDEI CTNAG 5 cut(s) 299, 525, 570, 638, 748
BstDSI CCRYGG 1 cut(s) 768
BstF5I GGATG 6 cut(s) 277, 359, 424, 601, 701, 1072
BstFNI CGCG 2 cut(s) 26, 758
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 8 cut(s) 277, 531, 889, 937, 943, 949, 976, 1072
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 8 cut(s) 274, 528, 886, 934, 940, 946, 973, 1069
BstMWI GCNNNNNNNGC 3 cut(s) 25, 764, 836
BstNI CCWGG 2 cut(s) 692, 697
BstNSI RCATGY 2 cut(s) 487, 820
BstSCI CCNGG 3 cut(s) 445, 690, 695
BstSLI GKGCMC 1 cut(s) 652
BstUI CGCG 2 cut(s) 26, 758
BstV1I GCAGC 1 cut(s) 588
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 1 cut(s) 528
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 1 cut(s) 528
BsuRI GGCC 5 cut(s) 540, 695, 700, 767, 993
BtgI CCRYGG 1 cut(s) 768
BtsCI GGATG 6 cut(s) 277, 359, 424, 601, 701, 1072
BtsIMutI CAGTG 2 cut(s) 514, 918
BveI ACCTGC 1 cut(s) 988
Cac8I GCNNGC 1 cut(s) 995
CciI TCATGA 1 cut(s) 943
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 3 cut(s) 206, 461, 873
CpoI CGGWCCG 1 cut(s) 461
CseI GACGC 1 cut(s) 25
Csp6I GTAC 3 cut(s) 134, 733, 1135
CspAI ACCGGT 1 cut(s) 266
CspI CGGWCCG 1 cut(s) 461
CviQI GTAC 3 cut(s) 134, 733, 1135
DdeI CTNAG 5 cut(s) 299, 525, 570, 638, 748
DpnI GATC 8 cut(s) 276, 530, 888, 936, 942, 948, 975, 1071
DpnII GATC 8 cut(s) 274, 528, 886, 934, 940, 946, 973, 1069
DraIII CACNNNGTG 1 cut(s) 587
EaeI YGGCCR 3 cut(s) 693, 765, 991
Ecl136II GAGCTC 1 cut(s) 745
Eco130I CCWWGG 2 cut(s) 46, 768
Eco24I GRGCYC 1 cut(s) 747
Eco47I GGWCC 3 cut(s) 206, 461, 873
Eco53kI GAGCTC 1 cut(s) 745
EcoICRI GAGCTC 1 cut(s) 745
EcoO109I RGGNCCY 1 cut(s) 873
EcoRII CCWGG 2 cut(s) 690, 695
EcoT14I CCWWGG 2 cut(s) 46, 768
EcoT22I ATGCAT 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 747
ErhI CCWWGG 2 cut(s) 46, 768
FaqI GGGAC 2 cut(s) 428, 929
FbaI TGATCA 3 cut(s) 274, 946, 973
Fnu4HI GCNGC 1 cut(s) 577
FokI GGATG 6 cut(s) 264, 346, 411, 608, 688, 1079
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 1 cut(s) 577
FspBI CTAG 3 cut(s) 63, 255, 645
GlaI GCGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 577
HaeIII GGCC 5 cut(s) 540, 695, 700, 767, 993
HapII CCGG 2 cut(s) 267, 447
HgaI GACGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 28
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 897
HinfI GANTC 4 cut(s) 258, 404, 806, 1028
HpaI GTTAAC 1 cut(s) 664
HpaII CCGG 2 cut(s) 267, 447
Hpy166II GTNNAC 3 cut(s) 496, 664, 1137
Hpy188I TCNGA 5 cut(s) 154, 528, 535, 618, 639
Hpy188III TCNNGA 8 cut(s) 204, 272, 401, 929, 938, 944, 1037, 1078
Hpy8I GTNNAC 3 cut(s) 496, 664, 1137
HpyAV CCTTC 6 cut(s) 226, 291, 373, 697, 863, 886
HpyCH4III ACNGT 3 cut(s) 461, 922, 1141
HpyCH4IV ACGT 1 cut(s) 735
HpyCH4V TGCA 7 cut(s) 487, 599, 610, 839, 862, 956, 1088
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 764, 836
HpyF3I CTNAG 5 cut(s) 299, 525, 570, 638, 748
HpySE526I ACGT 1 cut(s) 735
HspAI GCGC 1 cut(s) 26
Ksp22I TGATCA 3 cut(s) 274, 946, 973
KspAI GTTAAC 1 cut(s) 664
Kzo9I GATC 8 cut(s) 274, 528, 886, 934, 940, 946, 973, 1069
LmnI GCTCC 4 cut(s) 295, 742, 835, 931
Lsp1109I GCAGC 1 cut(s) 588
LweI GCATC 2 cut(s) 424, 586
MaeI CTAG 3 cut(s) 63, 255, 645
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 4 cut(s) 289, 351, 1021, 1120
MalI GATC 8 cut(s) 276, 530, 888, 936, 942, 948, 975, 1071
MboI GATC 8 cut(s) 274, 528, 886, 934, 940, 946, 973, 1069
MboII GAAGA 1 cut(s) 503
MflI RGATCY 1 cut(s) 528
MhlI GDGCHC 2 cut(s) 652, 747
MlsI TGGCCA 3 cut(s) 695, 767, 993
MluCI AATT 3 cut(s) 374, 1032, 1165
MluI ACGCGT 1 cut(s) 756
MluNI TGGCCA 3 cut(s) 695, 767, 993
MlyI GAGTC 1 cut(s) 1037
MmeI TCCRAC 2 cut(s) 573, 737
MnlI CCTC 7 cut(s) 118, 329, 662, 787, 835, 1053, 1084
Mox20I TGGCCA 3 cut(s) 695, 767, 993
Mph1103I ATGCAT 1 cut(s) 601
MscI TGGCCA 3 cut(s) 695, 767, 993
MseI TTAA 2 cut(s) 663, 761
MslI CAYNNNNRTG 1 cut(s) 347
Msp20I TGGCCA 3 cut(s) 695, 767, 993
MspA1I CMGCKG 1 cut(s) 1116
MspI CCGG 2 cut(s) 267, 447
MspR9I CCNGG 3 cut(s) 447, 692, 697
MvaI CCWGG 2 cut(s) 692, 697
MvnI CGCG 2 cut(s) 26, 758
MwoI GCNNNNNNNGC 3 cut(s) 25, 764, 836
NciI CCSGG 1 cut(s) 447
NcoI CCATGG 1 cut(s) 768
NdeII GATC 8 cut(s) 274, 528, 886, 934, 940, 946, 973, 1069
NlaIV GGNNCC 2 cut(s) 451, 874
NmuCI GTSAC 2 cut(s) 351, 1021
NsiI ATGCAT 1 cut(s) 601
NspI RCATGY 2 cut(s) 487, 820
NspV TTCGAA 1 cut(s) 903
PagI TCATGA 1 cut(s) 943
PfeI GAWTC 3 cut(s) 258, 404, 806
PflFI GACNNNGTC 1 cut(s) 1027
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 1 cut(s) 578
PleI GAGTC 1 cut(s) 1036
PpsI GAGTC 1 cut(s) 1036
PpuMI RGGWCCY 1 cut(s) 873
Psp124BI GAGCTC 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 873
Psp6I CCWGG 2 cut(s) 690, 695
PspGI CCWGG 2 cut(s) 690, 695
PspN4I GGNNCC 2 cut(s) 451, 874
PspPI GGNCC 3 cut(s) 206, 461, 873
PspPPI RGGWCCY 1 cut(s) 873
PsuI RGATCY 1 cut(s) 528
PsyI GACNNNGTC 1 cut(s) 1027
PvuII CAGCTG 1 cut(s) 1116
RsaI GTAC 3 cut(s) 135, 734, 1136
RsaNI GTAC 3 cut(s) 134, 733, 1135
RseI CAYNNNNRTG 1 cut(s) 347
Rsr2I CGGWCCG 1 cut(s) 461
RsrII CGGWCCG 1 cut(s) 461
SacI GAGCTC 1 cut(s) 747
SaqAI TTAA 2 cut(s) 663, 761
SatI GCNGC 1 cut(s) 577
Sau3AI GATC 8 cut(s) 274, 528, 886, 934, 940, 946, 973, 1069
Sau96I GGNCC 3 cut(s) 206, 461, 873
SchI GAGTC 1 cut(s) 1037
ScrFI CCNGG 3 cut(s) 447, 692, 697
SduI GDGCHC 2 cut(s) 652, 747
SfaNI GCATC 2 cut(s) 424, 586
SfuI TTCGAA 1 cut(s) 903
SinI GGWCC 3 cut(s) 206, 461, 873
SmiMI CAYNNNNRTG 1 cut(s) 347
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 3 cut(s) 374, 1032, 1165
SsiI CCGC 3 cut(s) 81, 131, 262
SspI AATATT 1 cut(s) 984
SspMI CTAG 3 cut(s) 63, 255, 645
SstI GAGCTC 1 cut(s) 747
StyD4I CCNGG 3 cut(s) 445, 690, 695
StyI CCWWGG 2 cut(s) 46, 768
TaaI ACNGT 3 cut(s) 461, 922, 1141
TaiI ACGT 1 cut(s) 738
TaqI TCGA 3 cut(s) 903, 939, 1038
TasI AATT 3 cut(s) 374, 1032, 1165
TatI WGTACW 1 cut(s) 1134
TfiI GAWTC 3 cut(s) 258, 404, 806
Tru1I TTAA 2 cut(s) 663, 761
Tru9I TTAA 2 cut(s) 663, 761
TscAI CASTG 2 cut(s) 521, 925
TseFI GTSAC 2 cut(s) 351, 1021
TseI GCWGC 1 cut(s) 576
Tsp45I GTSAC 2 cut(s) 351, 1021
TspDTI ATGAA 2 cut(s) 56, 868
TspGWI ACGGA 4 cut(s) 308, 453, 681, 899
TspRI CASTG 2 cut(s) 521, 925
Tth111I GACNNNGTC 1 cut(s) 1027
VpaK11BI GGWCC 3 cut(s) 206, 461, 873
XapI RAATTY 1 cut(s) 1165
XceI RCATGY 2 cut(s) 487, 820
XspI CTAG 3 cut(s) 63, 255, 645
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.