Rh4CG414300

Jasmonate O-methyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001051
Physical Location & Seq
Reverse (-)
65872330 .. 65875255
2926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG414300.1

Sequence Viewer

Length: 1140 bp
ATGGAGGTGACGCAAATACTTCACATGAACAACGGAGATGACGAGACTAGTTATGCCAAAAACTCCACAGTTCAGAGAAAAACATTATCCATAGCCAAGCCGATCATTGAGGAAGCAGTGCTAGAACTCTTGGGATCCAATATCATGGCAATAGAGAGCATGGGAATAGCAGATTTGGGTTGCTCATCCGGACCCAACACCTTACTACTCATCTCGCAGATCATGGATGCCATACATGCTATACCTAGCAAAGTTACAGAGCTTAGAGTGTTTCTAAATGACCTCTTTAGCAACGACTTCAACTCCATCTTCATGTCACTCCCATCATTCTACAACAAACTGAAACAAGACTATGATAATAGTCGTGATCCCGATCAGCATGTCATAAATCCGTTGATTTCTGCTGTGCCCGGTTCGTTTTACGGTCCATTGTTTCCCAGAAAGAGCGTGCACTTTGTTCATTCTTCTTTTAGTCTTCACTGGCTCTCTCAGGTGCCCGATGGCCTAAACAACAAAGGAAATATATACATTTCTAAGAGCAGCCCGCAATGCGTATTAGACGCATACTCCATGCAGTTTCAGAAAGACTTTTCGGTTTTTCTGAGATCTAGGGCACAAGAAATAGTCGAGGGAGGACGAATGGTGTTGTCCTTCATGGGCAGGCCATCCTCTGACCCAACAGCTGATCAGGGCACTTTCTACCAGTTCGAGCTCTTAGCCCACGCATTAATGGACACGGTGTCCAAGGGTCTTATAAAAGAGGAAATGGTTAATTCCTTCAACATGCCCTACTATACTTCATGTGCAGAGGAATTGAATTTGGTGTTACAAAAAGAAGGGTCTTTCATCAAGGACCGCCTTGAAGCATTCGAAGTGAATTGGGATACTGGTGCTGCTGATCTCGATCACAACATGCCTAACGGTGCATTTGACCATGATCAAACAATAACAAGCAGTGGGCAGCGAGTGGCCAATAGCATAAGAGTCGTGGCCGAGTCAATGCTCGAATCTCATTTTGGAAAAGAGATAATGGATGAGGTGTTTAAGAAATATACAAAGCTCGTTAGCAAGCACTTATCAAATAGTACTACTAGACCCAAGTATACAGTTTTGGTCACCTCACTCATTCGAAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

379

Amino Acids

42.47

Weight (kDa)

5.57

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 47 - 377 1.9e-113 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 493
AccI GTMKAC 1 cut(s) 1103
AccIII TCCGGA 1 cut(s) 188
AciI CCGC 2 cut(s) 545, 856
AclWI GGATC 3 cut(s) 129, 142, 362
AcoI YGGCCR 2 cut(s) 969, 990
AcsI RAATTY 1 cut(s) 817
AfaI GTAC 1 cut(s) 1087
AgsI TTSAA 4 cut(s) 301, 781, 817, 863
AhdI GACNNNNNGTC 1 cut(s) 739
AhlI ACTAGT 1 cut(s) 47
AjuI GAANNNNNNNTTGG 2 cut(s) 999, 1031
AluBI AGCT 4 cut(s) 262, 683, 712, 1060
AluI AGCT 4 cut(s) 262, 683, 712, 1060
Alw21I GWGCWC 2 cut(s) 453, 714
Alw26I GTCTC 1 cut(s) 38
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 3 cut(s) 129, 142, 362
Aor13HI TCCGGA 1 cut(s) 188
AoxI GGCC 4 cut(s) 502, 662, 969, 990
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 540, 893, 961
ApoI RAATTY 1 cut(s) 817
AseI ATTAAT 1 cut(s) 728
AspS9I GGNCC 3 cut(s) 191, 425, 853
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 2 cut(s) 19, 1108
AsuII TTCGAA 2 cut(s) 870, 1129
AvaII GGWCC 3 cut(s) 191, 425, 853
BaeGI GKGCMC 5 cut(s) 411, 453, 498, 616, 695
BalI TGGCCA 1 cut(s) 971
BamHI GGATCC 1 cut(s) 134
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 714
BbsI GAAGAC 1 cut(s) 467
Bbv12I GWGCWC 2 cut(s) 453, 714
BbvI GCAGC 3 cut(s) 552, 880, 973
BccI CCATC 4 cut(s) 314, 331, 494, 673
BcgI CGANNNNNNTGC 2 cut(s) 967, 1001
BciVI GTATCC 1 cut(s) 877
BclI TGATCA 2 cut(s) 685, 937
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 38
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 5 cut(s) 48, 122, 246, 609, 1092
BfuI GTATCC 1 cut(s) 877
BglII AGATCT 1 cut(s) 605
BisI GCNGC 3 cut(s) 541, 894, 962
BlsI GCNGC 3 cut(s) 542, 895, 963
BmcAI AGTACT 1 cut(s) 1087
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 3 cut(s) 191, 425, 853
BmeRI GACNNNNNGTC 1 cut(s) 739
BmgT120I GGNCC 3 cut(s) 191, 425, 853
BmiI GGNNCC 3 cut(s) 136, 193, 495
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 467
Bpu14I TTCGAA 2 cut(s) 870, 1129
BpuMI CCSGG 1 cut(s) 411
BsaBI GATNNNNATC 2 cut(s) 372, 903
BsaJI CCNNGG 1 cut(s) 744
BsaWI WCCGGW 1 cut(s) 188
BsaXI ACNNNNNCTCC 4 cut(s) 287, 317, 551, 581
Bse1I ACTGG 3 cut(s) 485, 703, 892
Bse3DI GCAATG 1 cut(s) 554
Bse8I GATNNNNATC 2 cut(s) 372, 903
BseAI TCCGGA 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 744
BseGI GGATG 4 cut(s) 185, 232, 665, 1039
BseJI GATNNNNATC 2 cut(s) 372, 903
BseMI GCAATG 1 cut(s) 554
BseMII CTCAG 2 cut(s) 503, 593
BseNI ACTGG 3 cut(s) 485, 703, 892
BseSI GKGCMC 5 cut(s) 411, 453, 498, 616, 695
BseXI GCAGC 3 cut(s) 552, 880, 973
BsgI GTGCAG 1 cut(s) 825
BshFI GGCC 4 cut(s) 504, 664, 971, 992
BshNI GGYRCC 1 cut(s) 493
BsiHKAI GWGCWC 2 cut(s) 453, 714
BsiSI CCGG 2 cut(s) 189, 411
BsmAI GTCTC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 866
BsnI GGCC 4 cut(s) 504, 664, 971, 992
Bsp119I TTCGAA 2 cut(s) 870, 1129
Bsp1286I GDGCHC 6 cut(s) 411, 453, 498, 616, 695, 714
Bsp13I TCCGGA 1 cut(s) 188
BspACI CCGC 2 cut(s) 545, 856
BspANI GGCC 4 cut(s) 504, 664, 971, 992
BspCNI CTCAG 2 cut(s) 502, 594
BspEI TCCGGA 1 cut(s) 188
BspLI GGNNCC 3 cut(s) 136, 193, 495
BspPI GGATC 3 cut(s) 129, 142, 362
BspT104I TTCGAA 2 cut(s) 870, 1129
BspT107I GGYRCC 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 554
BsrI ACTGG 3 cut(s) 485, 703, 892
BssECI CCNNGG 1 cut(s) 744
BssNAI GTATAC 1 cut(s) 1104
BssT1I CCWWGG 1 cut(s) 744
Bst1107I GTATAC 1 cut(s) 1104
Bst4CI ACNGT 5 cut(s) 70, 425, 739, 923, 1108
BstBI TTCGAA 2 cut(s) 870, 1129
BstC8I GCNNGC 4 cut(s) 449, 545, 662, 1070
BstDEI CTNAG 5 cut(s) 263, 489, 534, 602, 715
BstEII GGTNACC 1 cut(s) 1114
BstF5I GGATG 4 cut(s) 185, 232, 665, 1039
BstMAI GTCTC 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 236, 549
BstNSI RCATGY 4 cut(s) 239, 383, 787, 916
BstPI GGTNACC 1 cut(s) 1114
BstSCI CCNGG 1 cut(s) 409
BstSLI GKGCMC 5 cut(s) 411, 453, 498, 616, 695
BstV1I GCAGC 3 cut(s) 552, 880, 973
BstV2I GAAGAC 1 cut(s) 467
BstX2I RGATCY 2 cut(s) 134, 605
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 2 cut(s) 134, 605
BstZ17I GTATAC 1 cut(s) 1104
BsuI GTATCC 1 cut(s) 877
BsuRI GGCC 4 cut(s) 504, 664, 971, 992
BtsCI GGATG 4 cut(s) 185, 232, 665, 1039
BtsI GCAGTG 2 cut(s) 123, 961
BtsIMutI CAGTG 3 cut(s) 123, 478, 961
Cac8I GCNNGC 4 cut(s) 449, 545, 662, 1070
Cfr13I GGNCC 3 cut(s) 191, 425, 853
CseI GACGC 2 cut(s) 19, 569
Csp6I GTAC 1 cut(s) 1086
CviQI GTAC 1 cut(s) 1086
DdeI CTNAG 5 cut(s) 263, 489, 534, 602, 715
DriI GACNNNNNGTC 1 cut(s) 739
EaeI YGGCCR 2 cut(s) 969, 990
Eam1105I GACNNNNNGTC 1 cut(s) 739
Ecl136II GAGCTC 1 cut(s) 712
Eco130I CCWWGG 1 cut(s) 744
Eco24I GRGCYC 1 cut(s) 714
Eco47I GGWCC 3 cut(s) 191, 425, 853
Eco53kI GAGCTC 1 cut(s) 712
Eco91I GGTNACC 1 cut(s) 1114
EcoICRI GAGCTC 1 cut(s) 712
EcoO65I GGTNACC 1 cut(s) 1114
EcoT14I CCWWGG 1 cut(s) 744
EcoT38I GRGCYC 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 744
FauI CCCGC 1 cut(s) 552
FbaI TGATCA 2 cut(s) 685, 937
FblI GTMKAC 1 cut(s) 1103
Fnu4HI GCNGC 3 cut(s) 541, 894, 962
FokI GGATG 4 cut(s) 172, 239, 652, 1046
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 3 cut(s) 541, 894, 962
FspBI CTAG 5 cut(s) 48, 122, 246, 609, 1092
GluI GCNGC 3 cut(s) 541, 894, 962
HaeIII GGCC 4 cut(s) 504, 664, 971, 992
HapII CCGG 2 cut(s) 189, 411
HgaI GACGC 2 cut(s) 19, 569
HinfI GANTC 3 cut(s) 984, 995, 1007
HpaII CCGG 2 cut(s) 189, 411
HphI GGTGA 2 cut(s) 19, 1108
Hpy166II GTNNAC 2 cut(s) 451, 1104
Hpy188I TCNGA 4 cut(s) 75, 582, 603, 673
Hpy188III TCNNGA 4 cut(s) 189, 365, 371, 902
Hpy8I GTNNAC 2 cut(s) 451, 1104
HpyAV CCTTC 3 cut(s) 661, 787, 830
HpyCH4III ACNGT 5 cut(s) 70, 425, 739, 923, 1108
HpyCH4V TGCA 4 cut(s) 451, 574, 806, 926
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 549
HpyF3I CTNAG 5 cut(s) 263, 489, 534, 602, 715
Kpn2I TCCGGA 1 cut(s) 188
Ksp22I TGATCA 2 cut(s) 685, 937
LpnPI CCDG 9 cut(s) 202, 424, 451, 466, 476, 646, 674, 716, 873
Lsp1109I GCAGC 3 cut(s) 552, 880, 973
LweI GCATC 1 cut(s) 217
MaeI CTAG 5 cut(s) 48, 122, 246, 609, 1092
MaeIII GTNAC 5 cut(s) 7, 253, 315, 825, 1114
MboII GAAGA 3 cut(s) 301, 456, 467
MflI RGATCY 2 cut(s) 134, 605
MhlI GDGCHC 6 cut(s) 411, 453, 498, 616, 695, 714
MlsI TGGCCA 1 cut(s) 971
MluCI AATT 4 cut(s) 772, 812, 817, 877
MluNI TGGCCA 1 cut(s) 971
MlyI GAGTC 2 cut(s) 993, 1004
MnlI CCTC 9 cut(s) 103, 293, 622, 626, 679, 754, 802, 1030, 1129
Mox20I TGGCCA 1 cut(s) 971
MroI TCCGGA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 971
MseI TTAA 3 cut(s) 728, 771, 1044
MslI CAYNNNNRTG 1 cut(s) 311
Msp20I TGGCCA 1 cut(s) 971
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 2 cut(s) 189, 411
MspR9I CCNGG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 866
MwoI GCNNNNNNNGC 2 cut(s) 236, 549
NciI CCSGG 1 cut(s) 411
NlaIV GGNNCC 3 cut(s) 136, 193, 495
NmeAIII GCCGAG 1 cut(s) 1018
NmuCI GTSAC 3 cut(s) 7, 315, 1114
NspI RCATGY 4 cut(s) 239, 383, 787, 916
NspV TTCGAA 2 cut(s) 870, 1129
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PctI GAATGC 1 cut(s) 866
PfeI GAWTC 1 cut(s) 1007
PkrI GCNGC 3 cut(s) 542, 895, 963
PleI GAGTC 2 cut(s) 992, 1003
PpsI GAGTC 2 cut(s) 992, 1003
PshBI ATTAAT 1 cut(s) 728
PsiI TTATAA 1 cut(s) 755
Psp124BI GAGCTC 1 cut(s) 714
PspEI GGTNACC 1 cut(s) 1114
PspN4I GGNNCC 3 cut(s) 136, 193, 495
PspPI GGNCC 3 cut(s) 191, 425, 853
PsuI RGATCY 2 cut(s) 134, 605
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 1 cut(s) 1087
RsaNI GTAC 1 cut(s) 1086
RseI CAYNNNNRTG 1 cut(s) 311
SacI GAGCTC 1 cut(s) 714
SaqAI TTAA 3 cut(s) 728, 771, 1044
SatI GCNGC 3 cut(s) 541, 894, 962
Sau96I GGNCC 3 cut(s) 191, 425, 853
ScaI AGTACT 1 cut(s) 1087
SchI GAGTC 2 cut(s) 993, 1004
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 6 cut(s) 411, 453, 498, 616, 695, 714
SfaNI GCATC 1 cut(s) 217
SfuI TTCGAA 2 cut(s) 870, 1129
SinI GGWCC 3 cut(s) 191, 425, 853
SmiMI CAYNNNNRTG 1 cut(s) 311
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 4 cut(s) 772, 812, 817, 877
SsiI CCGC 2 cut(s) 545, 856
SspMI CTAG 5 cut(s) 48, 122, 246, 609, 1092
SstI GAGCTC 1 cut(s) 714
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 1 cut(s) 744
TaaI ACNGT 5 cut(s) 70, 425, 739, 923, 1108
TaqI TCGA 6 cut(s) 627, 708, 870, 903, 1005, 1129
TasI AATT 4 cut(s) 772, 812, 817, 877
TatI WGTACW 1 cut(s) 1085
TfiI GAWTC 1 cut(s) 1007
Tru1I TTAA 3 cut(s) 728, 771, 1044
Tru9I TTAA 3 cut(s) 728, 771, 1044
TscAI CASTG 3 cut(s) 123, 485, 961
TseFI GTSAC 3 cut(s) 7, 315, 1114
TseI GCWGC 3 cut(s) 540, 893, 961
Tsp45I GTSAC 3 cut(s) 7, 315, 1114
TspDTI ATGAA 6 cut(s) 41, 301, 449, 643, 789, 835
TspGWI ACGGA 2 cut(s) 48, 381
TspRI CASTG 3 cut(s) 123, 485, 961
VneI GTGCAC 1 cut(s) 449
VpaK11BI GGWCC 3 cut(s) 191, 425, 853
VspI ATTAAT 1 cut(s) 728
XapI RAATTY 1 cut(s) 817
XceI RCATGY 4 cut(s) 239, 383, 787, 916
XmiI GTMKAC 1 cut(s) 1103
XspI CTAG 5 cut(s) 48, 122, 246, 609, 1092
ZrmI AGTACT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.