Rh7BG350600

Jasmonate O-methyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001051
Physical Location & Seq
Reverse (-)
36648834 .. 36650582
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG350600.1

Sequence Viewer

Length: 1128 bp
ATGGAGGAGACGTTAGCTATTGAGAAAAAACAGAAGATTATTTTCTTTTGCTGTGGAAGGAAAAAAACAATATCTATCGCCAAGCCAATCATTGAGAAAGCAGTGCTAGAAATCTTGGGGTCCAATATCATGGGAATAGAGAGCATGGGAATAGCAGATTTGGGTTGCTCCTCTGGACCCAACACCTTCCTACTCATCTCGCATATCATGGATGTAATACATGCTAAATTTAGCACGGTTACAGAGCTTAGAGTGTTTCTAAATGACCTCTTTAGCAACGACTTCAACTCCATCTTTATGTCACTCCCAGCCTTCTACGATAAACTGAATAAGCAAGACTATAATAATGGTCGTGATCCTGAGCAGCATGTCATAAATCCCTTAATTTCTGCTGTGCCCGGTTCGTTTTACGGTCCATTGTTTCCCAGAAAGAGTATGCACTTTGTTCACTCTTCTTTTAGTCTTCACTGGCTATCTCAGGTCCCCGATGGCCTAAACAACAAAGGAAAGATTTACATGTCTAAGAGCAGCCCACAGTGTGTGTTGGATGCATACTCCATCCAGTTTCAGAAAGACTTTGCTGTTTTTCTGAGGTCTAGGGCACAAGAAATAGTCGACGGAGGACGAATGGTGTTGTCCTTCATGGGCAGGCCTTCCTCTGACCCAACAGCTGATCAGGGAACTTTCTACCAGTACGAGCTCTTAGCCCAAGCATTAATGGCCATGGTTTCCAAGGGTCTTATAAAAGAGGAGAAGGTTGATTCCTTCAACTTGCCCCACTATGCTCCATGTGCAGAGGAATTGAATTTGGTGTTACAAAAAGAAGGGTCTTTCATCAAGGAACACCTTAAAGCATTCGAAGTTGATTGGGATACTGGCGGTGCTGATCTCGATCATCATAACATGCCTAACGGTACATTTGACGACGATCAAACTGTTAGCAATGGGCAGCAAATGGCCAATGGCATAAGAGCCGTGGTTGAGTCAATGCTTGAATCTCATTTTGGAAAAGAGATAATGGATGATGTGTTTCAGAAATATGCGGAGCTCGTTAGCAGGCACTTAACAAATAGTACCACTATACCCAAGTATACTGTTTGGGTCATTTCACTCGTTAAAAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

375

Amino Acids

42.12

Weight (kDa)

5.85

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 45 - 373 4e-115 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 743
AccI GTMKAC 2 cut(s) 615, 1091
AciI CCGC 2 cut(s) 879, 1043
AclWI GGATC 1 cut(s) 350
AcoI YGGCCR 2 cut(s) 720, 957
AcsI RAATTY 2 cut(s) 227, 805
AdeI CACNNNGTG 1 cut(s) 539
AfaI GTAC 3 cut(s) 695, 916, 1075
AflIII ACRYGT 1 cut(s) 516
AgsI TTSAA 4 cut(s) 286, 769, 805, 995
AjuI GAANNNNNNNTTGG 2 cut(s) 987, 1019
AluBI AGCT 5 cut(s) 17, 247, 671, 700, 1048
AluI AGCT 5 cut(s) 17, 247, 671, 700, 1048
Alw21I GWGCWC 2 cut(s) 702, 1050
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 1 cut(s) 350
AoxI GGCC 4 cut(s) 490, 650, 720, 957
ApeKI GCWGC 3 cut(s) 364, 528, 949
ApoI RAATTY 2 cut(s) 227, 805
AseI ATTAAT 1 cut(s) 716
AspS9I GGNCC 4 cut(s) 120, 176, 413, 481
AsuC2I CCSGG 1 cut(s) 399
AsuII TTCGAA 1 cut(s) 858
AvaII GGWCC 4 cut(s) 120, 176, 413, 481
BaeGI GKGCMC 2 cut(s) 399, 604
BalI TGGCCA 2 cut(s) 722, 959
BanII GRGCYC 2 cut(s) 702, 1050
BbsI GAAGAC 1 cut(s) 455
Bbv12I GWGCWC 2 cut(s) 702, 1050
BbvI GCAGC 3 cut(s) 376, 540, 961
BccI CCATC 3 cut(s) 299, 482, 566
BceAI ACGGC 1 cut(s) 959
BciVI GTATCC 1 cut(s) 865
BclI TGATCA 1 cut(s) 673
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 2 cut(s) 107, 597
BfuI GTATCC 1 cut(s) 865
BisI GCNGC 3 cut(s) 365, 529, 950
BlsI GCNGC 3 cut(s) 366, 530, 951
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 4 cut(s) 120, 176, 413, 481
BmgT120I GGNCC 4 cut(s) 120, 176, 413, 481
BmiI GGNNCC 3 cut(s) 121, 178, 483
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 455
Bpu10I CCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 858
BpuMI CCSGG 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 891
BsaJI CCNNGG 3 cut(s) 723, 732, 975
BsaXI ACNNNNNCTCC 3 cut(s) 26, 272, 302
Bse1I ACTGG 4 cut(s) 473, 562, 691, 880
Bse3DI GCAATG 1 cut(s) 949
Bse8I GATNNNNATC 1 cut(s) 891
BseDI CCNNGG 3 cut(s) 723, 732, 975
BseGI GGATG 4 cut(s) 217, 553, 558, 1027
BseJI GATNNNNATC 1 cut(s) 891
BseMI GCAATG 1 cut(s) 949
BseMII CTCAG 3 cut(s) 351, 491, 581
BseNI ACTGG 4 cut(s) 473, 562, 691, 880
BseRI GAGGAG 3 cut(s) 20, 160, 764
BseSI GKGCMC 2 cut(s) 399, 604
BseXI GCAGC 3 cut(s) 376, 540, 961
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 813
BshFI GGCC 4 cut(s) 492, 652, 722, 959
BsiHKAI GWGCWC 2 cut(s) 702, 1050
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 2
BsmBI CGTCTC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 1 cut(s) 854
BsnI GGCC 4 cut(s) 492, 652, 722, 959
Bsp119I TTCGAA 1 cut(s) 858
Bsp1286I GDGCHC 4 cut(s) 399, 604, 702, 1050
Bsp143I GATC 5 cut(s) 355, 673, 886, 892, 928
Bsp19I CCATGG 1 cut(s) 723
BspACI CCGC 2 cut(s) 879, 1043
BspANI GGCC 4 cut(s) 492, 652, 722, 959
BspCNI CTCAG 3 cut(s) 352, 490, 582
BspLI GGNNCC 3 cut(s) 121, 178, 483
BspPI GGATC 1 cut(s) 350
BspT104I TTCGAA 1 cut(s) 858
BsrDI GCAATG 1 cut(s) 949
BsrI ACTGG 4 cut(s) 473, 562, 691, 880
BssECI CCNNGG 3 cut(s) 723, 732, 975
BssMI GATC 5 cut(s) 355, 673, 886, 892, 928
BssNAI GTATAC 1 cut(s) 1092
BssT1I CCWWGG 2 cut(s) 723, 732
Bst1107I GTATAC 1 cut(s) 1092
Bst4CI ACNGT 6 cut(s) 238, 413, 537, 914, 937, 1096
Bst6I CTCTTC 1 cut(s) 457
BstBI TTCGAA 1 cut(s) 858
BstC8I GCNNGC 2 cut(s) 650, 1058
BstDEI CTNAG 6 cut(s) 248, 360, 477, 522, 590, 703
BstDSI CCRYGG 2 cut(s) 723, 975
BstF5I GGATG 4 cut(s) 217, 553, 558, 1027
BstKTI GATC 5 cut(s) 358, 676, 889, 895, 931
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 5 cut(s) 355, 673, 886, 892, 928
BstMWI GCNNNNNNNGC 2 cut(s) 719, 791
BstNSI RCATGY 4 cut(s) 224, 371, 520, 907
BstSCI CCNGG 1 cut(s) 397
BstSLI GKGCMC 2 cut(s) 399, 604
BstV1I GCAGC 3 cut(s) 376, 540, 961
BstV2I GAAGAC 1 cut(s) 455
BstXI CCANNNNNNTGG 1 cut(s) 130
BstZ17I GTATAC 1 cut(s) 1092
BsuI GTATCC 1 cut(s) 865
BsuRI GGCC 4 cut(s) 492, 652, 722, 959
BtgI CCRYGG 2 cut(s) 723, 975
BtsCI GGATG 4 cut(s) 217, 553, 558, 1027
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 3 cut(s) 108, 466, 542
Cac8I GCNNGC 2 cut(s) 650, 1058
Cfr13I GGNCC 4 cut(s) 120, 176, 413, 481
Csp6I GTAC 3 cut(s) 694, 915, 1074
CviQI GTAC 3 cut(s) 694, 915, 1074
DdeI CTNAG 6 cut(s) 248, 360, 477, 522, 590, 703
DpnI GATC 5 cut(s) 357, 675, 888, 894, 930
DpnII GATC 5 cut(s) 355, 673, 886, 892, 928
DraIII CACNNNGTG 1 cut(s) 539
EaeI YGGCCR 2 cut(s) 720, 957
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
Ecl136II GAGCTC 2 cut(s) 700, 1048
Eco130I CCWWGG 2 cut(s) 723, 732
Eco147I AGGCCT 1 cut(s) 652
Eco24I GRGCYC 2 cut(s) 702, 1050
Eco47I GGWCC 4 cut(s) 120, 176, 413, 481
Eco53kI GAGCTC 2 cut(s) 700, 1048
EcoICRI GAGCTC 2 cut(s) 700, 1048
EcoO109I RGGNCCY 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 723, 732
EcoT22I ATGCAT 1 cut(s) 553
EcoT38I GRGCYC 2 cut(s) 702, 1050
ErhI CCWWGG 2 cut(s) 723, 732
Esp3I CGTCTC 1 cut(s) 2
FaqI GGGAC 1 cut(s) 467
FbaI TGATCA 1 cut(s) 673
FblI GTMKAC 2 cut(s) 615, 1091
Fnu4HI GCNGC 3 cut(s) 365, 529, 950
FokI GGATG 4 cut(s) 224, 545, 560, 1034
FriOI GRGCYC 2 cut(s) 702, 1050
Fsp4HI GCNGC 3 cut(s) 365, 529, 950
FspBI CTAG 2 cut(s) 107, 597
GluI GCNGC 3 cut(s) 365, 529, 950
GsaI CCCAGC 1 cut(s) 311
HaeIII GGCC 4 cut(s) 492, 652, 722, 959
HapII CCGG 1 cut(s) 399
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HinfI GANTC 3 cut(s) 761, 983, 995
HpaII CCGG 1 cut(s) 399
Hpy166II GTNNAC 3 cut(s) 448, 616, 1092
Hpy188I TCNGA 4 cut(s) 570, 591, 661, 1035
Hpy188III TCNNGA 4 cut(s) 174, 353, 359, 890
Hpy8I GTNNAC 3 cut(s) 448, 616, 1092
Hpy99I CGWCG 2 cut(s) 620, 929
HpyAV CCTTC 8 cut(s) 51, 196, 322, 649, 663, 748, 775, 818
HpyCH4III ACNGT 6 cut(s) 238, 413, 537, 914, 937, 1096
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 3 cut(s) 439, 551, 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 719, 791
HpyF3I CTNAG 6 cut(s) 248, 360, 477, 522, 590, 703
HpySE526I ACGT 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 5 cut(s) 355, 673, 886, 892, 928
LmnI GCTCC 3 cut(s) 173, 790, 1045
Lsp1109I GCAGC 3 cut(s) 376, 540, 961
LweI GCATC 1 cut(s) 538
MaeI CTAG 2 cut(s) 107, 597
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 3 cut(s) 238, 300, 813
MalI GATC 5 cut(s) 357, 675, 888, 894, 930
MboI GATC 5 cut(s) 355, 673, 886, 892, 928
MboII GAAGA 3 cut(s) 46, 444, 455
MhlI GDGCHC 4 cut(s) 399, 604, 702, 1050
MlsI TGGCCA 2 cut(s) 722, 959
MluCI AATT 4 cut(s) 227, 384, 800, 805
MluNI TGGCCA 2 cut(s) 722, 959
MlyI GAGTC 1 cut(s) 992
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 7 cut(s) 181, 278, 585, 614, 667, 742, 790
Mox20I TGGCCA 2 cut(s) 722, 959
Mph1103I ATGCAT 1 cut(s) 553
MscI TGGCCA 2 cut(s) 722, 959
MseI TTAA 5 cut(s) 383, 716, 849, 1064, 1116
MslI CAYNNNNRTG 1 cut(s) 296
Msp20I TGGCCA 2 cut(s) 722, 959
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 854
MwoI GCNNNNNNNGC 2 cut(s) 719, 791
NciI CCSGG 1 cut(s) 399
NcoI CCATGG 1 cut(s) 723
NdeII GATC 5 cut(s) 355, 673, 886, 892, 928
NlaIV GGNNCC 3 cut(s) 121, 178, 483
NmuCI GTSAC 1 cut(s) 300
NsiI ATGCAT 1 cut(s) 553
NspI RCATGY 4 cut(s) 224, 371, 520, 907
NspV TTCGAA 1 cut(s) 858
PceI AGGCCT 1 cut(s) 652
PciI ACATGT 1 cut(s) 516
PctI GAATGC 1 cut(s) 854
PfeI GAWTC 2 cut(s) 761, 995
PkrI GCNGC 3 cut(s) 366, 530, 951
PleI GAGTC 1 cut(s) 991
PpsI GAGTC 1 cut(s) 991
PpuMI RGGWCCY 1 cut(s) 481
PscI ACATGT 1 cut(s) 516
PshBI ATTAAT 1 cut(s) 716
PsiI TTATAA 1 cut(s) 743
Psp124BI GAGCTC 2 cut(s) 702, 1050
Psp5II RGGWCCY 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 307
PspN4I GGNNCC 3 cut(s) 121, 178, 483
PspPI GGNCC 4 cut(s) 120, 176, 413, 481
PspPPI RGGWCCY 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 3 cut(s) 695, 916, 1075
RsaNI GTAC 3 cut(s) 694, 915, 1074
RseI CAYNNNNRTG 1 cut(s) 296
SacI GAGCTC 2 cut(s) 702, 1050
SalI GTCGAC 1 cut(s) 614
SaqAI TTAA 5 cut(s) 383, 716, 849, 1064, 1116
SatI GCNGC 3 cut(s) 365, 529, 950
Sau3AI GATC 5 cut(s) 355, 673, 886, 892, 928
Sau96I GGNCC 4 cut(s) 120, 176, 413, 481
SchI GAGTC 1 cut(s) 992
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 4 cut(s) 399, 604, 702, 1050
SfaNI GCATC 1 cut(s) 538
SfuI TTCGAA 1 cut(s) 858
SinI GGWCC 4 cut(s) 120, 176, 413, 481
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 4 cut(s) 227, 384, 800, 805
SseBI AGGCCT 1 cut(s) 652
SsiI CCGC 2 cut(s) 879, 1043
SspMI CTAG 2 cut(s) 107, 597
SstI GAGCTC 2 cut(s) 702, 1050
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 2 cut(s) 723, 732
TaaI ACNGT 6 cut(s) 238, 413, 537, 914, 937, 1096
TaiI ACGT 1 cut(s) 14
TaqI TCGA 3 cut(s) 615, 858, 891
TasI AATT 4 cut(s) 227, 384, 800, 805
TfiI GAWTC 2 cut(s) 761, 995
Tru1I TTAA 5 cut(s) 383, 716, 849, 1064, 1116
Tru9I TTAA 5 cut(s) 383, 716, 849, 1064, 1116
TscAI CASTG 3 cut(s) 108, 473, 542
TseFI GTSAC 1 cut(s) 300
TseI GCWGC 3 cut(s) 364, 528, 949
Tsp45I GTSAC 1 cut(s) 300
TspDTI ATGAA 2 cut(s) 631, 823
TspGWI ACGGA 1 cut(s) 633
TspRI CASTG 3 cut(s) 108, 473, 542
VpaK11BI GGWCC 4 cut(s) 120, 176, 413, 481
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 2 cut(s) 227, 805
XceI RCATGY 4 cut(s) 224, 371, 520, 907
XmiI GTMKAC 2 cut(s) 615, 1091
XspI CTAG 2 cut(s) 107, 597
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.