Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Forward (+)

1990869 .. 1991981

Gene Structure 1113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1027300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAATTTCGGCGACTTCGCCTGAACCGGAACGAGCTCGAGTCTTATACACTAATACCGGGCTCGTTTTACGGCAGATTGTTTCCGGCAAAGAGTTTACATTTCGTGCACTCCTCTTCTAGTCTTCATTGGCTATCTCAGGTCCCTCCTGGCCTGGATTGCCAGGCAACTGGCAGAGCGTTTAACAGAGGAAAGATGTACATTTCTAAGACCAGCCCTCAATGCGTTTTGGATGCATATTCACTTCAATTTCACAAGGACTTTTTGCTATTTCTCAAGTCCCGGGCTGAAGAAATAGTTGGCGGAGGACGAATGGTGCTGTCACTCCTGGGCAGGTCGTCCGCTGACCCATCAACTCAAGAGAGTTGCTACGTGCAGTGGGAACTCCTAGCTCATGCATTAATGAGAATGGTTTCAGAGGGTCTCATTGAAGAGGAAAGGGTTGATTCCTTCAACGCTCCGTTCTATGCCCCAAGTGAAGAGGAACTAAAATTGGTGTTACAAAATGAAGGATCATTTACAATGGACCGCCTTGAAGCCTTTGAAATTGATTGGGATGGTGGTGCAGAAATAACCGCTGTAGTCAGTGGGCAGCGAATGGCCAAGACCATAAGAGCTGTGACCGAGTCCATGATCGAATCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

216

Amino Acids

24.31

Weight (kDa)

5.56

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	17 - 215	2.4e-79	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	324
AciI	CCGC	4 cut(s)	303, 342, 529, 576
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	200
AgsI	TTSAA	5 cut(s)	248, 431, 454, 536, 545
AjnI	CCWGG	4 cut(s)	148, 153, 162, 327
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	3 cut(s)	37, 392, 617
AluI	AGCT	3 cut(s)	37, 392, 617
Alw21I	GWGCWC	2 cut(s)	39, 111
Alw26I	GTCTC	1 cut(s)	428
Alw44I	GTGCAC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	520
Ama87I	CYCGRG	2 cut(s)	38, 282
AoxI	GGCC	2 cut(s)	151, 600
ApaLI	GTGCAC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	592
ApoI	RAATTY	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	412
AspS9I	GGNCC	2 cut(s)	142, 526
AsuC2I	CCSGG	3 cut(s)	60, 283, 284
AvaI	CYCGRG	2 cut(s)	38, 282
AvaII	GGWCC	2 cut(s)	142, 526
BaeGI	GKGCMC	1 cut(s)	111
BalI	TGGCCA	1 cut(s)	602
BanII	GRGCYC	2 cut(s)	39, 65
BbsI	GAAGAC	1 cut(s)	116
Bbv12I	GWGCWC	2 cut(s)	39, 111
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	2 cut(s)	358, 551
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	4 cut(s)	150, 155, 164, 329
BcnI	CCSGG	3 cut(s)	60, 283, 284
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	2 cut(s)	120, 389
BfmI	CTRYAG	1 cut(s)	579
BfuAI	ACCTGC	1 cut(s)	324
BisI	GCNGC	1 cut(s)	593
BlsI	GCNGC	1 cut(s)	594
Bme1390I	CCNGG	7 cut(s)	60, 150, 155, 164, 283, 284, 329
Bme18I	GGWCC	2 cut(s)	142, 526
BmeT110I	CYCGRG	2 cut(s)	38, 282
BmgT120I	GGNCC	2 cut(s)	142, 526
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	7 cut(s)	60, 150, 155, 164, 283, 284, 329
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	116
BpuEI	CTTGAG	2 cut(s)	260, 342
BpuMI	CCSGG	3 cut(s)	60, 283, 284
BsaAI	YACGTR	1 cut(s)	373
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	282, 328
BsaWI	WCCGGW	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	4 cut(s)	150, 155, 164, 329
BseDI	CCNNGG	2 cut(s)	282, 328
BseGI	GGATG	2 cut(s)	238, 562
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	604
BsgI	GTGCAG	2 cut(s)	395, 585
BshFI	GGCC	2 cut(s)	153, 602
BsiHKAI	GWGCWC	2 cut(s)	39, 111
BsiHKCI	CYCGRG	2 cut(s)	38, 282
BsiSI	CCGG	4 cut(s)	28, 59, 86, 283
BslFI	GGGAC	2 cut(s)	128, 265
BsmAI	GTCTC	1 cut(s)	428
BsmFI	GGGAC	2 cut(s)	128, 265
BsnI	GGCC	2 cut(s)	153, 602
Bso31I	GGTCTC	1 cut(s)	428
BsoBI	CYCGRG	2 cut(s)	38, 282
Bsp1286I	GDGCHC	3 cut(s)	39, 65, 111
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	512, 633
BspACI	CCGC	4 cut(s)	303, 342, 529, 576
BspANI	GGCC	2 cut(s)	153, 602
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	428
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	282, 328
BssMI	GATC	2 cut(s)	512, 633
Bst2UI	CCWGG	4 cut(s)	150, 155, 164, 329
Bst6I	CTCTTC	3 cut(s)	121, 426, 474
BstAUI	TGTACA	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	138, 207
BstF5I	GGATG	2 cut(s)	238, 562
BstKTI	GATC	2 cut(s)	515, 636
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	2 cut(s)	512, 633
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 222
BstNI	CCWGG	4 cut(s)	150, 155, 164, 329
BstSCI	CCNGG	7 cut(s)	58, 148, 153, 162, 281, 282, 327
BstSFI	CTRYAG	1 cut(s)	579
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	604
BstV2I	GAAGAC	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	153, 602
BtsCI	GGATG	2 cut(s)	238, 562
BtsI	GCAGTG	1 cut(s)	383
BtsIMutI	CAGTG	2 cut(s)	383, 592
BveI	ACCTGC	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	142, 526
Cfr9I	CCCGGG	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	395, 631
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	2 cut(s)	138, 207
DpnI	GATC	2 cut(s)	514, 635
DpnII	GATC	2 cut(s)	512, 633
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	3 cut(s)	121, 426, 474
EarI	CTCTTC	3 cut(s)	121, 426, 474
EciI	GGCGGA	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	2 cut(s)	39, 65
Eco31I	GGTCTC	1 cut(s)	428
Eco47I	GGWCC	2 cut(s)	142, 526
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	2 cut(s)	38, 282
EcoICRI	GAGCTC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	4 cut(s)	148, 153, 162, 327
EcoT22I	ATGCAT	2 cut(s)	238, 400
EcoT38I	GRGCYC	2 cut(s)	39, 65
FaeI	CATG	2 cut(s)	398, 634
FaiI	YATR	6 cut(s)	48, 238, 396, 468, 611, 632
FaqI	GGGAC	2 cut(s)	128, 265
FatI	CATG	2 cut(s)	394, 630
Fnu4HI	GCNGC	1 cut(s)	593
FokI	GGATG	2 cut(s)	245, 569
FriOI	GRGCYC	2 cut(s)	39, 65
Fsp4HI	GCNGC	1 cut(s)	593
FspBI	CTAG	2 cut(s)	120, 389
GluI	GCNGC	1 cut(s)	593
HaeIII	GGCC	2 cut(s)	153, 602
HapII	CCGG	4 cut(s)	28, 59, 86, 283
Hin1II	CATG	2 cut(s)	398, 634
HinfI	GANTC	4 cut(s)	41, 446, 626, 638
HpaII	CCGG	4 cut(s)	28, 59, 86, 283
Hpy166II	GTNNAC	2 cut(s)	98, 109
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	2 cut(s)	98, 109
HpyAV	CCTTC	2 cut(s)	460, 503
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	5 cut(s)	109, 236, 376, 398, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 222
HpyF3I	CTNAG	2 cut(s)	138, 207
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	398, 634
Kzo9I	GATC	2 cut(s)	512, 633
LmnI	GCTCC	1 cut(s)	463
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	120, 389
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	321, 498, 619
MalI	GATC	2 cut(s)	514, 635
MboI	GATC	2 cut(s)	512, 633
MboII	GAAGA	5 cut(s)	108, 116, 302, 443, 491
MhlI	GDGCHC	3 cut(s)	39, 65, 111
MlsI	TGGCCA	1 cut(s)	602
MluCI	AATT	4 cut(s)	5, 248, 491, 546
MluNI	TGGCCA	1 cut(s)	602
MlyI	GAGTC	2 cut(s)	50, 635
MnlI	CCTC	8 cut(s)	124, 156, 182, 228, 299, 412, 427, 475
Mox20I	TGGCCA	1 cut(s)	602
Mph1103I	ATGCAT	2 cut(s)	238, 400
MroXI	GAANNNNTTC	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	602
MseI	TTAA	3 cut(s)	183, 401, 646
Msp20I	TGGCCA	1 cut(s)	602
MspA1I	CMGCKG	2 cut(s)	344, 578
MspI	CCGG	4 cut(s)	28, 59, 86, 283
MspR9I	CCNGG	7 cut(s)	60, 150, 155, 164, 283, 284, 329
MvaI	CCWGG	4 cut(s)	150, 155, 164, 329
MwoI	GCNNNNNNNGC	2 cut(s)	159, 222
NciI	CCSGG	3 cut(s)	60, 283, 284
NdeII	GATC	2 cut(s)	512, 633
NlaIII	CATG	2 cut(s)	398, 634
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	2 cut(s)	321, 619
NsiI	ATGCAT	2 cut(s)	238, 400
PaeR7I	CTCGAG	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	446, 638
PflFI	GACNNNGTC	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	594
PleI	GAGTC	2 cut(s)	49, 634
PpsI	GAGTC	2 cut(s)	49, 634
Ppu21I	YACGTR	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	401
Psp124BI	GAGCTC	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	4 cut(s)	148, 153, 162, 327
PspGI	CCWGG	4 cut(s)	148, 153, 162, 327
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	2 cut(s)	142, 526
PspPPI	RGGWCCY	1 cut(s)	142
PspXI	VCTCGAGB	1 cut(s)	38
PsyI	GACNNNGTC	1 cut(s)	625
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	183, 401, 646
SatI	GCNGC	1 cut(s)	593
Sau3AI	GATC	2 cut(s)	512, 633
Sau96I	GGNCC	2 cut(s)	142, 526
SchI	GAGTC	2 cut(s)	50, 635
ScrFI	CCNGG	7 cut(s)	60, 150, 155, 164, 283, 284, 329
SduI	GDGCHC	3 cut(s)	39, 65, 111
SetI	ASST	6 cut(s)	39, 144, 338, 375, 394, 619
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	579
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	2 cut(s)	142, 526
SlaI	CTCGAG	1 cut(s)	38
SmaI	CCCGGG	1 cut(s)	284
SmlI	CTYRAG	3 cut(s)	38, 275, 357
SmoI	CTYRAG	3 cut(s)	38, 275, 357
Sse9I	AATT	4 cut(s)	5, 248, 491, 546
SsiI	CCGC	4 cut(s)	303, 342, 529, 576
SspMI	CTAG	2 cut(s)	120, 389
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	7 cut(s)	58, 148, 153, 162, 281, 282, 327
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	2 cut(s)	39, 636
TaqII	GACCGA	1 cut(s)	638
TasI	AATT	4 cut(s)	5, 248, 491, 546
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	446, 638
Tru1I	TTAA	3 cut(s)	183, 401, 646
Tru9I	TTAA	3 cut(s)	183, 401, 646
TscAI	CASTG	2 cut(s)	383, 592
TseFI	GTSAC	2 cut(s)	321, 619
TseI	GCWGC	1 cut(s)	592
Tsp45I	GTSAC	2 cut(s)	321, 619
TspDTI	ATGAA	2 cut(s)	116, 522
TspGWI	ACGGA	1 cut(s)	450
TspMI	CCCGGG	1 cut(s)	282
TspRI	CASTG	2 cut(s)	383, 592
Tth111I	GACNNNGTC	1 cut(s)	625
VneI	GTGCAC	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	142, 526
VspI	ATTAAT	1 cut(s)	401
XapI	RAATTY	1 cut(s)	5
XhoI	CTCGAG	1 cut(s)	38
XmaI	CCCGGG	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	412
XspI	CTAG	2 cut(s)	120, 389
Zsp2I	ATGCAT	2 cut(s)	238, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.