Rh4BG399100

Jasmonate O-methyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001051
Physical Location & Seq
Reverse (-)
54965778 .. 54967585
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG399100.1

Sequence Viewer

Length: 1182 bp
ATGGAGGTGGTGACGCGACTTACGCAAGTACTTCACATGAACAAAGGCGATGGTGAGACTAGTTATGCCAGAAACTCCACTGTTCAGAGAAAAACAATATCTATCGCCAAGCCAATCATTGAGGAAGCAGTACTAGAAATCTTGGGCTCAAATGTCATGGGAATAGAAAGCATGGGAATAGCAGATTTGGGTTGCTCATCAGGACCCAACACCTTCCTAGTCATCTCGCAGATCATCAATGTCATACATACTAGATGCAGCACCGGTCTTGATCATCCGTCGCCAGTAACAGAGCTTAGAGTATATCTAAATGACCTCTTTAGCAACGACTTCAACTCCGTCTTTATGTCACTCCCATCATTCTACAACAAACTGAGACAAGACTATGATAATGGTCGTGATCCGGATCAGCATGTCATACATCCCTTGATTTCTGCTGTGCCCGGTTCGTTTTATGGTCCACTATTTCCTAAAAAGAGTTTGCACTTTGTTCACTCTTCTTTTAGTCTTCACTGGCTCTCTCAGATCCCCGATGGCCTAAACAACAAAGGCAAGATTTACATTTCTAAGAGCAGCCCACAGTGTGTGTTGGATGCATACTCCATGCAGTTTCAGAAAGACTTTTCGGTTTTTCTGAGGTCTAGGGCACAAGAAATAGTTAACGGAGGTCGAATGGTGTTGTCCTTCTTGGGCAGGCCATCCTCTGACCCCACAGCTGATCAGGGCACTTTCTACCAGTTCGAGCTCTTAGCCCACGCATTAATGCACATGGTGTCCAAGGGCCTTATAGAAGAGGAAATGGTTGATTCCTTCGACATGCCCTACTATACTTCATGTGCAGAGGAATTGAGTTTGGTGTTACAAGAAGAAGGGTCTTTCATCAAGGACCGCCTTGAAGCATTCGAAGTGAATTGGGATACTGGTGCTGCTGATCTCGATCACAACATGCCTAACGTTAGGCCTAACGGTGCATTTGACGATGATCATACAATAACAAGCAGCGGGCAGCGAGTGGCCAATAGCATAAGAGTCGTGGCTGAGTCAATGCTTAAATCTCATTTTGGCAAAGAGATAATGGATGAGGTGTTTCAGAAATATGCAGAGCTCGTTAGCAAGCGCTTATCAAATAGTACCAGACCCAATTATACGGTGTTGGTCATTTCACTCGTTAAAAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

393

Amino Acids

43.97

Weight (kDa)

5.62

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 55 - 391 2.5e-115 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 16
AccIII TCCGGA 1 cut(s) 403
AciI CCGC 2 cut(s) 889, 1002
AclI AACGTT 1 cut(s) 954
AclWI GGATC 3 cut(s) 395, 414, 520
AcoI YGGCCR 1 cut(s) 1014
AdeI CACNNNGTG 2 cut(s) 584, 772
AfaI GTAC 3 cut(s) 30, 132, 1132
AfeI AGCGCT 1 cut(s) 1118
AgeI ACCGGT 1 cut(s) 263
AgsI TTSAA 2 cut(s) 334, 896
AhlI ACTAGT 1 cut(s) 59
AluBI AGCT 5 cut(s) 295, 716, 745, 1105, 1179
AluI AGCT 5 cut(s) 295, 716, 745, 1105, 1179
Alw21I GWGCWC 2 cut(s) 747, 1107
Alw26I GTCTC 2 cut(s) 50, 370
AlwI GGATC 3 cut(s) 395, 414, 520
Aor13HI TCCGGA 1 cut(s) 403
Aor51HI AGCGCT 1 cut(s) 1118
AoxI GGCC 5 cut(s) 535, 695, 781, 959, 1014
ApeKI GCWGC 5 cut(s) 258, 573, 926, 999, 1006
AseI ATTAAT 1 cut(s) 761
AsiGI ACCGGT 1 cut(s) 263
AspLEI GCGC 1 cut(s) 1119
AspS9I GGNCC 4 cut(s) 203, 458, 781, 886
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 2 cut(s) 22, 65
AsuII TTCGAA 1 cut(s) 903
AvaII GGWCC 3 cut(s) 203, 458, 886
BaeGI GKGCMC 3 cut(s) 444, 649, 728
BalI TGGCCA 1 cut(s) 1016
BanII GRGCYC 3 cut(s) 149, 747, 1107
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 2 cut(s) 747, 1107
BbvI GCAGC 5 cut(s) 270, 585, 913, 1011, 1018
BccI CCATC 4 cut(s) 44, 364, 527, 706
BcgI CGANNNNNNTGC 2 cut(s) 1012, 1046
BciVI GTATCC 1 cut(s) 910
BclI TGATCA 3 cut(s) 271, 718, 982
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 50, 370
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 5 cut(s) 60, 134, 218, 252, 642
BfoI RGCGCY 1 cut(s) 1120
BfuI GTATCC 1 cut(s) 910
BisI GCNGC 5 cut(s) 259, 574, 927, 1000, 1007
BlsI GCNGC 5 cut(s) 260, 575, 928, 1001, 1008
BmcAI AGTACT 2 cut(s) 30, 132
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 3 cut(s) 203, 458, 886
BmgT120I GGNCC 4 cut(s) 203, 458, 781, 886
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 2 cut(s) 245, 583
BpiI GAAGAC 1 cut(s) 500
Bpu14I TTCGAA 1 cut(s) 903
BpuMI CCSGG 1 cut(s) 444
BsaBI GATNNNNATC 2 cut(s) 405, 936
BsaJI CCNNGG 1 cut(s) 777
BsaWI WCCGGW 2 cut(s) 263, 403
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 4 cut(s) 284, 518, 736, 925
Bse8I GATNNNNATC 2 cut(s) 405, 936
BseAI TCCGGA 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 777
BseGI GGATG 5 cut(s) 274, 421, 598, 698, 1084
BseJI GATNNNNATC 2 cut(s) 405, 936
BseMII CTCAG 4 cut(s) 365, 536, 626, 1029
BseNI ACTGG 4 cut(s) 284, 518, 736, 925
BseSI GKGCMC 3 cut(s) 444, 649, 728
BseXI GCAGC 5 cut(s) 270, 585, 913, 1011, 1018
BsgI GTGCAG 1 cut(s) 858
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 5 cut(s) 537, 697, 783, 961, 1016
BshTI ACCGGT 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 747, 1107
BsiSI CCGG 3 cut(s) 264, 404, 444
BsmAI GTCTC 2 cut(s) 50, 370
BsmI GAATGC 1 cut(s) 899
BsnI GGCC 5 cut(s) 537, 697, 783, 961, 1016
Bsp119I TTCGAA 1 cut(s) 903
Bsp1286I GDGCHC 6 cut(s) 149, 444, 649, 728, 747, 1107
Bsp13I TCCGGA 1 cut(s) 403
Bsp143I GATC 9 cut(s) 231, 271, 400, 406, 525, 718, 931, 937, 982
BspACI CCGC 2 cut(s) 889, 1002
BspANI GGCC 5 cut(s) 537, 697, 783, 961, 1016
BspCNI CTCAG 4 cut(s) 366, 535, 627, 1030
BspEI TCCGGA 1 cut(s) 403
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 205
BspPI GGATC 3 cut(s) 395, 414, 520
BspT104I TTCGAA 1 cut(s) 903
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 4 cut(s) 284, 518, 736, 925
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 777
BssMI GATC 9 cut(s) 231, 271, 400, 406, 525, 718, 931, 937, 982
BssT1I CCWWGG 1 cut(s) 777
Bst4CI ACNGT 4 cut(s) 82, 582, 968, 1150
Bst6I CTCTTC 2 cut(s) 502, 786
BstBI TTCGAA 1 cut(s) 903
BstC8I GCNNGC 3 cut(s) 695, 1004, 1115
BstDEI CTNAG 7 cut(s) 296, 374, 522, 567, 635, 748, 1038
BstF5I GGATG 5 cut(s) 274, 421, 598, 698, 1084
BstFNI CGCG 1 cut(s) 16
BstH2I RGCGCY 1 cut(s) 1120
BstHHI GCGC 1 cut(s) 1119
BstKTI GATC 9 cut(s) 234, 274, 403, 409, 528, 721, 934, 940, 985
BstMAI GTCTC 2 cut(s) 50, 370
BstMBI GATC 9 cut(s) 231, 271, 400, 406, 525, 718, 931, 937, 982
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNSI RCATGY 3 cut(s) 416, 820, 949
BstSCI CCNGG 1 cut(s) 442
BstSLI GKGCMC 3 cut(s) 444, 649, 728
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 5 cut(s) 270, 585, 913, 1011, 1018
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 525
BstYI RGATCY 1 cut(s) 525
BsuI GTATCC 1 cut(s) 910
BsuRI GGCC 5 cut(s) 537, 697, 783, 961, 1016
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 5 cut(s) 274, 421, 598, 698, 1084
BtsIMutI CAGTG 3 cut(s) 78, 511, 587
Cac8I GCNNGC 3 cut(s) 695, 1004, 1115
CfoI GCGC 1 cut(s) 1119
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 4 cut(s) 203, 458, 781, 886
CseI GACGC 1 cut(s) 22
Csp6I GTAC 3 cut(s) 29, 131, 1131
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 9 cut(s) 37, 157, 172, 413, 604, 769, 817, 834, 946
CviQI GTAC 3 cut(s) 29, 131, 1131
DdeI CTNAG 7 cut(s) 296, 374, 522, 567, 635, 748, 1038
DpnI GATC 9 cut(s) 233, 273, 402, 408, 527, 720, 933, 939, 984
DpnII GATC 9 cut(s) 231, 271, 400, 406, 525, 718, 931, 937, 982
DraIII CACNNNGTG 2 cut(s) 584, 772
EaeI YGGCCR 1 cut(s) 1014
Eam1104I CTCTTC 2 cut(s) 502, 786
EarI CTCTTC 2 cut(s) 502, 786
Ecl136II GAGCTC 2 cut(s) 745, 1105
Eco130I CCWWGG 1 cut(s) 777
Eco147I AGGCCT 1 cut(s) 961
Eco24I GRGCYC 3 cut(s) 149, 747, 1107
Eco47I GGWCC 3 cut(s) 203, 458, 886
Eco47III AGCGCT 1 cut(s) 1118
Eco53kI GAGCTC 2 cut(s) 745, 1105
EcoICRI GAGCTC 2 cut(s) 745, 1105
EcoO109I RGGNCCY 2 cut(s) 203, 781
EcoT14I CCWWGG 1 cut(s) 777
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 3 cut(s) 149, 747, 1107
ErhI CCWWGG 1 cut(s) 777
FaeI CATG 9 cut(s) 40, 160, 175, 416, 607, 772, 820, 837, 949
FatI CATG 9 cut(s) 36, 156, 171, 412, 603, 768, 816, 833, 945
FauI CCCGC 1 cut(s) 995
FbaI TGATCA 3 cut(s) 271, 718, 982
Fnu4HI GCNGC 5 cut(s) 259, 574, 927, 1000, 1007
FokI GGATG 5 cut(s) 261, 408, 605, 685, 1091
FriOI GRGCYC 3 cut(s) 149, 747, 1107
Fsp4HI GCNGC 5 cut(s) 259, 574, 927, 1000, 1007
FspBI CTAG 5 cut(s) 60, 134, 218, 252, 642
GlaI GCGC 1 cut(s) 1118
GluI GCNGC 5 cut(s) 259, 574, 927, 1000, 1007
HaeII RGCGCY 1 cut(s) 1120
HaeIII GGCC 5 cut(s) 537, 697, 783, 961, 1016
HapII CCGG 3 cut(s) 264, 404, 444
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 1119
Hin1II CATG 9 cut(s) 40, 160, 175, 416, 607, 772, 820, 837, 949
Hin6I GCGC 1 cut(s) 1117
HinP1I GCGC 1 cut(s) 1117
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HinfI GANTC 3 cut(s) 806, 1029, 1040
HpaI GTTAAC 1 cut(s) 661
HpaII CCGG 3 cut(s) 264, 404, 444
HphI GGTGA 2 cut(s) 22, 65
Hpy166II GTNNAC 3 cut(s) 461, 493, 661
Hpy188I TCNGA 6 cut(s) 87, 525, 615, 636, 706, 1092
Hpy188III TCNNGA 5 cut(s) 201, 269, 398, 404, 935
Hpy8I GTNNAC 3 cut(s) 461, 493, 661
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 4 cut(s) 223, 694, 820, 863
HpyCH4III ACNGT 4 cut(s) 82, 582, 968, 1150
HpyCH4IV ACGT 1 cut(s) 954
HpyCH4V TGCA 8 cut(s) 258, 484, 596, 607, 766, 839, 971, 1100
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 7 cut(s) 296, 374, 522, 567, 635, 748, 1038
HpySE526I ACGT 1 cut(s) 954
Hsp92II CATG 9 cut(s) 40, 160, 175, 416, 607, 772, 820, 837, 949
HspAI GCGC 1 cut(s) 1117
Kpn2I TCCGGA 1 cut(s) 403
Ksp22I TGATCA 3 cut(s) 271, 718, 982
KspAI GTTAAC 1 cut(s) 661
Kzo9I GATC 9 cut(s) 231, 271, 400, 406, 525, 718, 931, 937, 982
Lsp1109I GCAGC 5 cut(s) 270, 585, 913, 1011, 1018
LweI GCATC 2 cut(s) 245, 583
MaeI CTAG 5 cut(s) 60, 134, 218, 252, 642
MaeII ACGT 1 cut(s) 954
MaeIII GTNAC 4 cut(s) 10, 286, 348, 858
MalI GATC 9 cut(s) 233, 273, 402, 408, 527, 720, 933, 939, 984
MboI GATC 9 cut(s) 231, 271, 400, 406, 525, 718, 931, 937, 982
MboII GAAGA 4 cut(s) 489, 500, 803, 878
MflI RGATCY 1 cut(s) 525
MhlI GDGCHC 6 cut(s) 149, 444, 649, 728, 747, 1107
MlsI TGGCCA 1 cut(s) 1016
MluCI AATT 3 cut(s) 845, 910, 1141
MluNI TGGCCA 1 cut(s) 1016
MlyI GAGTC 2 cut(s) 1038, 1049
MmeI TCCRAC 1 cut(s) 570
MnlI CCTC 8 cut(s) 115, 326, 630, 659, 712, 787, 835, 1075
Mox20I TGGCCA 1 cut(s) 1016
Mph1103I ATGCAT 1 cut(s) 598
MroI TCCGGA 1 cut(s) 403
MscI TGGCCA 1 cut(s) 1016
MseI TTAA 4 cut(s) 660, 761, 1050, 1170
Msp20I TGGCCA 1 cut(s) 1016
MspA1I CMGCKG 2 cut(s) 716, 1002
MspI CCGG 3 cut(s) 264, 404, 444
MspR9I CCNGG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 899
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 22
NciI CCSGG 1 cut(s) 444
NdeII GATC 9 cut(s) 231, 271, 400, 406, 525, 718, 931, 937, 982
NlaIII CATG 9 cut(s) 40, 160, 175, 416, 607, 772, 820, 837, 949
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 2 cut(s) 10, 348
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 3 cut(s) 416, 820, 949
NspV TTCGAA 1 cut(s) 903
PceI AGGCCT 1 cut(s) 961
PctI GAATGC 1 cut(s) 899
PfeI GAWTC 1 cut(s) 806
PinAI ACCGGT 1 cut(s) 263
PkrI GCNGC 5 cut(s) 260, 575, 928, 1001, 1008
PleI GAGTC 2 cut(s) 1037, 1048
PpsI GAGTC 2 cut(s) 1037, 1048
PpuMI RGGWCCY 1 cut(s) 203
PshBI ATTAAT 1 cut(s) 761
Psp124BI GAGCTC 2 cut(s) 747, 1107
Psp1406I AACGTT 1 cut(s) 954
Psp5II RGGWCCY 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 4 cut(s) 203, 458, 781, 886
PspPPI RGGWCCY 1 cut(s) 203
PsuI RGATCY 1 cut(s) 525
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 3 cut(s) 30, 132, 1132
RsaNI GTAC 3 cut(s) 29, 131, 1131
SacI GAGCTC 2 cut(s) 747, 1107
SaqAI TTAA 4 cut(s) 660, 761, 1050, 1170
SatI GCNGC 5 cut(s) 259, 574, 927, 1000, 1007
Sau3AI GATC 9 cut(s) 231, 271, 400, 406, 525, 718, 931, 937, 982
Sau96I GGNCC 4 cut(s) 203, 458, 781, 886
ScaI AGTACT 2 cut(s) 30, 132
SchI GAGTC 2 cut(s) 1038, 1049
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 6 cut(s) 149, 444, 649, 728, 747, 1107
SfaNI GCATC 2 cut(s) 245, 583
SfuI TTCGAA 1 cut(s) 903
SinI GGWCC 3 cut(s) 203, 458, 886
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 3 cut(s) 845, 910, 1141
SseBI AGGCCT 1 cut(s) 961
SsiI CCGC 2 cut(s) 889, 1002
SspMI CTAG 5 cut(s) 60, 134, 218, 252, 642
SstI GAGCTC 2 cut(s) 747, 1107
StuI AGGCCT 1 cut(s) 961
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 777
TaaI ACNGT 4 cut(s) 82, 582, 968, 1150
TaiI ACGT 1 cut(s) 957
TaqI TCGA 5 cut(s) 670, 741, 813, 903, 936
TasI AATT 3 cut(s) 845, 910, 1141
TatI WGTACW 2 cut(s) 28, 130
TfiI GAWTC 1 cut(s) 806
Tru1I TTAA 4 cut(s) 660, 761, 1050, 1170
Tru9I TTAA 4 cut(s) 660, 761, 1050, 1170
TscAI CASTG 3 cut(s) 85, 518, 587
TseFI GTSAC 2 cut(s) 10, 348
TseI GCWGC 5 cut(s) 258, 573, 926, 999, 1006
Tsp45I GTSAC 2 cut(s) 10, 348
TspDTI ATGAA 3 cut(s) 53, 822, 868
TspGWI ACGGA 3 cut(s) 267, 328, 678
TspRI CASTG 3 cut(s) 85, 518, 587
VpaK11BI GGWCC 3 cut(s) 203, 458, 886
VspI ATTAAT 1 cut(s) 761
XceI RCATGY 3 cut(s) 416, 820, 949
XspI CTAG 5 cut(s) 60, 134, 218, 252, 642
ZrmI AGTACT 2 cut(s) 30, 132
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.