Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Forward (+)

7961483 .. 7962877

Gene Structure 1395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011247

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAGGTGGTGCAGATACTTCACATGAACAAAGGCAACGGCGAGGCTAGCTATGCCCAAAATTCCAAAGTTCAGAACAAAATATTAGCAATCGCAAAGCCAATCATTGAGAAAGCCTTGCTCGAACTGTTGGGGTCAAACCGTGTTATGGCAATGGAGAGTATGGGCATAGCGGATTTGGGTTGCTCATCTGGACCTAACACCTTGCTTCTCATATCGGAGATCATGGATGTCATACATGCCCAACTCAGCAGTGGCCAGCTGCATCCCTCGTCGTCGTCAATGGAGTTTAGAGTGTTTCTCAACGACCTATTCAGCAACGACTTCAACACCGTCTTCATGTCACTTCCCGCATTCTACAACAAGCTGAGAGAAGACGATCGCTACAAGAGATTGTTTGGGGCTAACCCCAACCTCTTCATTTCTGCTGTGCCGGGCTCTTTCTACGGCAGATTGTTTGCCAGAAAAAGCCTGCATTTCGTGCACTCGTCCTCCAGTCTTCACTGGCTCTCTCAGGTTCCCCCCAGCCTGGACAGCAAGGCCGGCACGGCCTTGAACAAGGGGAAGATCTACATTTCTAAGAGCAGCCCGCAATGCGTATTGGATGCGTACTCACTTCAATTCCACGAGGACTTTTCGATGTTTCTCAAGTCTCGGGCAGAAGAAATAGTTGGAGGAGGAAGAATGGTCTTGTCATTCATGGGCAGGCCAACACTTGACCCTACAACCGAACAGAGTTGCTACCAGTGGGAGCTCTTGGCCCTTGCATTGATGAGCATGGTTTCAGATGGTCTTGTGGAAGAGGAGAAAGTTGATTCCTTCAACGCTCCCTACTATGCCCCATGTGCAGAGGAACTGAAGTCGGAGTTGCAAAAGGACGGCTCCTACATAATGGACCGACTTGAAGCGTTCGAAATTGATTGGGATGGTGGTGATGATGTTGTTGATGATCAAGCTAAAATCGTTAATGGTTTTGGTCAGGATCAGATGGTGGGTATTAGTGGGAAGCGGATGGCCAAAACCATAAGAGCGGTGGTAGAGTCAATGATCGAAGCTCATTTCGGGATAGAAATTATGGATGATCTGTTTCAGAGGTACACGGAGCTCGTCACCAATCACTTGTCAAAGAGGAGAACCAAGTATATCAATTTGGTCATTTCACTGATAAGAAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

393

Amino Acids

43.89

Weight (kDa)

5.47

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	51 - 390	4.2e-124	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1031
AciI	CCGC	5 cut(s)	173, 351, 590, 1009, 1031
AclWI	GGATC	1 cut(s)	990
AcoI	YGGCCR	2 cut(s)	256, 1014
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	878
AfaI	GTAC	2 cut(s)	611, 1097
AfiI	CCNNNNNNNGG	2 cut(s)	148, 529
AgsI	TTSAA	5 cut(s)	328, 556, 620, 823, 905
AjnI	CCWGG	1 cut(s)	528
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AluBI	AGCT	7 cut(s)	51, 262, 367, 754, 956, 1055, 1105
AluI	AGCT	7 cut(s)	51, 262, 367, 754, 956, 1055, 1105
Alw21I	GWGCWC	3 cut(s)	486, 756, 1107
Alw26I	GTCTC	1 cut(s)	657
Alw44I	GTGCAC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	990
Ama87I	CYCGRG	1 cut(s)	654
AoxI	GGCC	6 cut(s)	256, 540, 549, 707, 759, 1014
ApaLI	GTGCAC	1 cut(s)	482
ApeKI	GCWGC	2 cut(s)	262, 585
ApoI	RAATTY	1 cut(s)	61
AspS9I	GGNCC	3 cut(s)	194, 760, 895
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	944, 1102
AsuII	TTCGAA	1 cut(s)	912
AsuNHI	GCTAGC	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	654
AvaII	GGWCC	2 cut(s)	194, 895
BaeGI	GKGCMC	1 cut(s)	486
BalI	TGGCCA	2 cut(s)	258, 1016
BanII	GRGCYC	3 cut(s)	440, 756, 1107
BauI	CACGAG	1 cut(s)	626
BbsI	GAAGAC	3 cut(s)	328, 381, 491
Bbv12I	GWGCWC	3 cut(s)	486, 756, 1107
BbvI	GCAGC	2 cut(s)	249, 597
BccI	CCATC	4 cut(s)	782, 920, 982, 1006
BceAI	ACGGC	4 cut(s)	55, 463, 564, 895
BciT130I	CCWGG	1 cut(s)	530
BclI	TGATCA	1 cut(s)	949
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	657
BfaI	CTAG	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	548
BglII	AGATCT	1 cut(s)	567
BisI	GCNGC	2 cut(s)	263, 586
BlsI	GCNGC	2 cut(s)	264, 587
Bme1390I	CCNGG	2 cut(s)	435, 530
Bme18I	GGWCC	2 cut(s)	194, 895
BmeT110I	CYCGRG	1 cut(s)	654
BmgT120I	GGNCC	3 cut(s)	194, 760, 895
BmiI	GGNNCC	2 cut(s)	519, 883
BmrFI	CCNGG	2 cut(s)	435, 530
BmsI	GCATC	2 cut(s)	274, 595
BmtI	GCTAGC	1 cut(s)	51
BpiI	GAAGAC	3 cut(s)	328, 381, 491
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
BpmI	CTGGAG	1 cut(s)	478
Bpu14I	TTCGAA	1 cut(s)	912
BpuEI	CTTGAG	1 cut(s)	632
BpuMI	CCSGG	1 cut(s)	435
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 529
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	3 cut(s)	495, 509, 745
Bse3DI	GCAATG	2 cut(s)	159, 599
BseBI	CCWGG	1 cut(s)	530
BseGI	GGATG	6 cut(s)	235, 265, 610, 931, 1017, 1084
BseLI	CCNNNNNNNGG	2 cut(s)	148, 529
BseMI	GCAATG	2 cut(s)	159, 599
BseMII	CTCAG	3 cut(s)	262, 359, 527
BseNI	ACTGG	3 cut(s)	495, 509, 745
BseRI	GAGGAG	3 cut(s)	690, 818, 1144
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	2 cut(s)	249, 597
BseYI	CCCAGC	1 cut(s)	524
BsgI	GTGCAG	2 cut(s)	32, 867
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	6 cut(s)	258, 542, 551, 709, 761, 1016
BsiEI	CGRYCG	1 cut(s)	382
BsiHKAI	GWGCWC	3 cut(s)	486, 756, 1107
BsiHKCI	CYCGRG	1 cut(s)	654
BsiSI	CCGG	2 cut(s)	434, 543
BslI	CCNNNNNNNGG	2 cut(s)	148, 529
BsmAI	GTCTC	1 cut(s)	657
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	6 cut(s)	258, 542, 551, 709, 761, 1016
BsoBI	CYCGRG	1 cut(s)	654
Bsp119I	TTCGAA	1 cut(s)	912
Bsp1286I	GDGCHC	4 cut(s)	440, 486, 756, 1107
Bsp143I	GATC	7 cut(s)	222, 379, 567, 949, 982, 1047, 1081
BspACI	CCGC	5 cut(s)	173, 351, 590, 1009, 1031
BspANI	GGCC	6 cut(s)	258, 542, 551, 709, 761, 1016
BspCNI	CTCAG	3 cut(s)	261, 360, 526
BspLI	GGNNCC	2 cut(s)	519, 883
BspOI	GCTAGC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	990
BspT104I	TTCGAA	1 cut(s)	912
BsrBI	CCGCTC	1 cut(s)	1031
BsrDI	GCAATG	2 cut(s)	159, 599
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	3 cut(s)	495, 509, 745
BssAI	RCCGGY	1 cut(s)	542
BssMI	GATC	7 cut(s)	222, 379, 567, 949, 982, 1047, 1081
BssSI	CACGAG	1 cut(s)	626
Bst2BI	CACGAG	1 cut(s)	626
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	3 cut(s)	129, 143, 334
Bst6I	CTCTTC	2 cut(s)	422, 795
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstBI	TTCGAA	1 cut(s)	912
BstC8I	GCNNGC	6 cut(s)	49, 260, 473, 544, 590, 707
BstDEI	CTNAG	4 cut(s)	248, 368, 513, 579
BstF5I	GGATG	6 cut(s)	235, 265, 610, 931, 1017, 1084
BstKTI	GATC	7 cut(s)	225, 382, 570, 952, 985, 1050, 1084
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	7 cut(s)	222, 379, 567, 949, 982, 1047, 1081
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	8 cut(s)	48, 53, 481, 534, 543, 548, 594, 845
BstNI	CCWGG	1 cut(s)	530
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	433, 528
BstSLI	GKGCMC	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	249, 597
BstV2I	GAAGAC	3 cut(s)	328, 381, 491
BstX2I	RGATCY	1 cut(s)	567
BstYI	RGATCY	1 cut(s)	567
BsuRI	GGCC	6 cut(s)	258, 542, 551, 709, 761, 1016
BtsCI	GGATG	6 cut(s)	235, 265, 610, 931, 1017, 1084
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	4 cut(s)	259, 502, 752, 1160
Cac8I	GCNNGC	6 cut(s)	49, 260, 473, 544, 590, 707
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	3 cut(s)	194, 760, 895
Csp6I	GTAC	2 cut(s)	610, 1096
CviAII	CATG	7 cut(s)	25, 226, 239, 340, 700, 778, 843
CviQI	GTAC	2 cut(s)	610, 1096
DdeI	CTNAG	4 cut(s)	248, 368, 513, 579
DpnI	GATC	7 cut(s)	224, 381, 569, 951, 984, 1049, 1083
DpnII	GATC	7 cut(s)	222, 379, 567, 949, 982, 1047, 1081
EaeI	YGGCCR	2 cut(s)	256, 1014
Eam1104I	CTCTTC	2 cut(s)	422, 795
EarI	CTCTTC	2 cut(s)	422, 795
Ecl136II	GAGCTC	2 cut(s)	754, 1105
Eco24I	GRGCYC	3 cut(s)	440, 756, 1107
Eco47I	GGWCC	2 cut(s)	194, 895
Eco53kI	GAGCTC	2 cut(s)	754, 1105
Eco57I	CTGAAG	1 cut(s)	878
Eco88I	CYCGRG	1 cut(s)	654
EcoICRI	GAGCTC	2 cut(s)	754, 1105
EcoRII	CCWGG	1 cut(s)	528
EcoT38I	GRGCYC	3 cut(s)	440, 756, 1107
FaeI	CATG	7 cut(s)	28, 229, 242, 343, 703, 781, 846
FatI	CATG	7 cut(s)	24, 225, 238, 339, 699, 777, 842
FauI	CCCGC	2 cut(s)	358, 597
FbaI	TGATCA	1 cut(s)	949
Fnu4HI	GCNGC	2 cut(s)	263, 586
FokI	GGATG	6 cut(s)	242, 252, 617, 938, 1024, 1091
FriOI	GRGCYC	3 cut(s)	440, 756, 1107
Fsp4HI	GCNGC	2 cut(s)	263, 586
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	2 cut(s)	263, 586
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	478
HaeIII	GGCC	6 cut(s)	258, 542, 551, 709, 761, 1016
HapII	CCGG	2 cut(s)	434, 543
Hin1II	CATG	7 cut(s)	28, 229, 242, 343, 703, 781, 846
HinfI	GANTC	2 cut(s)	815, 1040
HpaII	CCGG	2 cut(s)	434, 543
HphI	GGTGA	2 cut(s)	944, 1102
Hpy166II	GTNNAC	2 cut(s)	484, 1098
Hpy188I	TCNGA	6 cut(s)	75, 220, 787, 865, 987, 1092
Hpy188III	TCNNGA	3 cut(s)	192, 980, 1063
Hpy8I	GTNNAC	2 cut(s)	484, 1098
Hpy99I	CGWCG	2 cut(s)	277, 280
HpyAV	CCTTC	2 cut(s)	829, 1164
HpyCH4III	ACNGT	3 cut(s)	129, 143, 334
HpyCH4V	TGCA	7 cut(s)	13, 265, 475, 484, 767, 848, 871
HpyF10VI	GCNNNNNNNGC	8 cut(s)	48, 53, 481, 534, 543, 548, 594, 845
HpyF3I	CTNAG	4 cut(s)	248, 368, 513, 579
Hsp92II	CATG	7 cut(s)	28, 229, 242, 343, 703, 781, 846
KroI	GCCGGC	1 cut(s)	542
KroNI	GCCGGC	1 cut(s)	544
Ksp22I	TGATCA	1 cut(s)	949
Kzo9I	GATC	7 cut(s)	222, 379, 567, 949, 982, 1047, 1081
LmnI	GCTCC	4 cut(s)	751, 832, 887, 1102
Lsp1109I	GCAGC	2 cut(s)	249, 597
LweI	GCATC	2 cut(s)	274, 595
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	342, 1108
MalI	GATC	7 cut(s)	224, 381, 569, 951, 984, 1049, 1083
MbiI	CCGCTC	1 cut(s)	1031
MboI	GATC	7 cut(s)	222, 379, 567, 949, 982, 1047, 1081
MboII	GAAGA	8 cut(s)	328, 386, 409, 491, 577, 674, 693, 812
MflI	RGATCY	1 cut(s)	567
MhlI	GDGCHC	4 cut(s)	440, 486, 756, 1107
MlsI	TGGCCA	2 cut(s)	258, 1016
MluCI	AATT	5 cut(s)	61, 620, 915, 1071, 1147
MluNI	TGGCCA	2 cut(s)	258, 1016
MlyI	GAGTC	1 cut(s)	1049
MmeI	TCCRAC	2 cut(s)	652, 843
Mox20I	TGGCCA	2 cut(s)	258, 1016
MroNI	GCCGGC	1 cut(s)	542
MscI	TGGCCA	2 cut(s)	258, 1016
MseI	TTAA	1 cut(s)	966
Msp20I	TGGCCA	2 cut(s)	258, 1016
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	2 cut(s)	434, 543
MspR9I	CCNGG	2 cut(s)	435, 530
Mva1269I	GAATGC	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	8 cut(s)	48, 53, 481, 534, 543, 548, 594, 845
NaeI	GCCGGC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	435
NdeII	GATC	7 cut(s)	222, 379, 567, 949, 982, 1047, 1081
NgoMIV	GCCGGC	1 cut(s)	542
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	7 cut(s)	28, 229, 242, 343, 703, 781, 846
NlaIV	GGNNCC	2 cut(s)	519, 883
NmuCI	GTSAC	2 cut(s)	342, 1108
NspI	RCATGY	1 cut(s)	242
NspV	TTCGAA	1 cut(s)	912
PctI	GAATGC	1 cut(s)	353
PdiI	GCCGGC	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	815
PkrI	GCNGC	2 cut(s)	264, 587
Ple19I	CGATCG	1 cut(s)	382
PleI	GAGTC	1 cut(s)	1048
PpsI	GAGTC	1 cut(s)	1048
Psp124BI	GAGCTC	2 cut(s)	756, 1107
Psp6I	CCWGG	1 cut(s)	528
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	2 cut(s)	519, 883
PspPI	GGNCC	3 cut(s)	194, 760, 895
PsuI	RGATCY	1 cut(s)	567
PvuI	CGATCG	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	262
RsaI	GTAC	2 cut(s)	611, 1097
RsaNI	GTAC	2 cut(s)	610, 1096
SacI	GAGCTC	2 cut(s)	756, 1107
SaqAI	TTAA	1 cut(s)	966
SatI	GCNGC	2 cut(s)	263, 586
Sau3AI	GATC	7 cut(s)	222, 379, 567, 949, 982, 1047, 1081
Sau96I	GGNCC	3 cut(s)	194, 760, 895
SchI	GAGTC	1 cut(s)	1049
ScrFI	CCNGG	2 cut(s)	435, 530
SduI	GDGCHC	4 cut(s)	440, 486, 756, 1107
SfaNI	GCATC	2 cut(s)	274, 595
SfiI	GGCCNNNNNGGCC	1 cut(s)	548
SfuI	TTCGAA	1 cut(s)	912
SinI	GGWCC	2 cut(s)	194, 895
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
Sse9I	AATT	5 cut(s)	61, 620, 915, 1071, 1147
SsiI	CCGC	5 cut(s)	173, 351, 590, 1009, 1031
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	1 cut(s)	48
SstI	GAGCTC	2 cut(s)	756, 1107
StyD4I	CCNGG	2 cut(s)	433, 528
TaaI	ACNGT	3 cut(s)	129, 143, 334
TaqI	TCGA	4 cut(s)	123, 638, 912, 1050
TaqII	GACCGA	1 cut(s)	912
TasI	AATT	5 cut(s)	61, 620, 915, 1071, 1147
TfiI	GAWTC	1 cut(s)	815
Tru1I	TTAA	1 cut(s)	966
Tru9I	TTAA	1 cut(s)	966
TscAI	CASTG	4 cut(s)	259, 509, 752, 1167
TseFI	GTSAC	2 cut(s)	342, 1108
TseI	GCWGC	2 cut(s)	262, 585
Tsp45I	GTSAC	2 cut(s)	342, 1108
TspDTI	ATGAA	4 cut(s)	41, 328, 409, 688
TspGWI	ACGGA	1 cut(s)	1115
TspRI	CASTG	4 cut(s)	259, 509, 752, 1167
VneI	GTGCAC	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	194, 895
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 1030
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.