Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8385149.1

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1131

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8385149.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgggaatagcagatttgggttgctcatcaggacccaacaccttactactcatctcgcagatcatggatgccatacatgctatacctagcaaagttacagagcttagagtgtttctaaatgacctctttagcaacgacttcaactccatcttcatgtcactcccatcattctacaacaaactgaaacaagactatgataatagtcgtgatcccgatcagcatgtcataaatccgttgatttctgctgtgcccggttcgttttacggtccattgtttcccagaaagagcgtgcactttgttcattcttcttttagtcttcactggctctctcaggtgcccgatggcctaaacaacaaaggaaatatatacatttctaagagcagcccgcagtgcgtattagacgcatactccatgcagtttcagaaagacttttccgtttttctgaggtcgagggcacaagaaatagccgagggaggacgaatggtgttgtccttcatgggcaggccatccactgacccaacagctgatcagggcactttctaccagttcgagctcttagcccacgcattaatggacatggtgtccaagggtcttataaaagaggaaatggttaattccttcaacatgccctactatacttcatgtgcagaggaattgaatttggtgttacaaaaagaagggtctttcatcaaggaccgccttgaagcattcgaagtgaattgggatactgatgcggctgatctcgatcacaacatgcctaacggtgcatttgaccatgatcaaacaataacaagcagtgggcagcgagtggccaatagcataagagtcgtggccgagtcaatgctcgaatctcattttggaaaagagataatggatgaggtgtttaagaaatatacagagctcgttagcaagcacttatcaaatagtactactagacccaagtatacagttttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

318

Amino Acids

35.8

Weight (kDa)

5.34

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	596
AccB1I	GGYRCC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	944
AciI	CCGC	3 cut(s)	386, 697, 734
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	2 cut(s)	810, 831
AcsI	RAATTY	1 cut(s)	658
AfaI	GTAC	1 cut(s)	928
AgsI	TTSAA	4 cut(s)	142, 622, 658, 704
AhdI	GACNNNNNGTC	1 cut(s)	580
AjuI	GAANNNNNNNTTGG	2 cut(s)	840, 872
AluBI	AGCT	4 cut(s)	103, 524, 553, 901
AluI	AGCT	4 cut(s)	103, 524, 553, 901
Alw21I	GWGCWC	3 cut(s)	294, 555, 903
Alw44I	GTGCAC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	4 cut(s)	343, 503, 810, 831
ApaLI	GTGCAC	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	381, 802
ApoI	RAATTY	1 cut(s)	658
AseI	ATTAAT	1 cut(s)	569
AspS9I	GGNCC	3 cut(s)	32, 266, 694
AsuC2I	CCSGG	1 cut(s)	252
AsuII	TTCGAA	1 cut(s)	711
AvaII	GGWCC	3 cut(s)	32, 266, 694
BaeGI	GKGCMC	5 cut(s)	252, 294, 339, 457, 536
BalI	TGGCCA	1 cut(s)	812
BanI	GGYRCC	1 cut(s)	334
BanII	GRGCYC	2 cut(s)	555, 903
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	3 cut(s)	294, 555, 903
BbvI	GCAGC	2 cut(s)	393, 814
BccI	CCATC	4 cut(s)	155, 172, 335, 514
BcgI	CGANNNNNNTGC	2 cut(s)	808, 842
BciVI	GTATCC	1 cut(s)	718
BclI	TGATCA	2 cut(s)	526, 778
BcnI	CCSGG	1 cut(s)	252
BfaI	CTAG	2 cut(s)	87, 933
BfuI	GTATCC	1 cut(s)	718
BisI	GCNGC	3 cut(s)	382, 735, 803
BlsI	GCNGC	3 cut(s)	383, 736, 804
BmcAI	AGTACT	1 cut(s)	928
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	3 cut(s)	32, 266, 694
BmeRI	GACNNNNNGTC	1 cut(s)	580
BmgT120I	GGNCC	3 cut(s)	32, 266, 694
BmiI	GGNNCC	2 cut(s)	34, 336
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	58, 721
BpiI	GAAGAC	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	711
BpuMI	CCSGG	1 cut(s)	252
BsaBI	GATNNNNATC	2 cut(s)	213, 744
BsaJI	CCNNGG	2 cut(s)	468, 585
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 392, 422
Bse1I	ACTGG	2 cut(s)	326, 544
Bse8I	GATNNNNATC	2 cut(s)	213, 744
BseDI	CCNNGG	2 cut(s)	468, 585
BseGI	GGATG	3 cut(s)	73, 506, 880
BseJI	GATNNNNATC	2 cut(s)	213, 744
BseMII	CTCAG	2 cut(s)	344, 434
BseNI	ACTGG	2 cut(s)	326, 544
BseSI	GKGCMC	5 cut(s)	252, 294, 339, 457, 536
BseXI	GCAGC	2 cut(s)	393, 814
BsgI	GTGCAG	1 cut(s)	666
BshFI	GGCC	4 cut(s)	345, 505, 812, 833
BshNI	GGYRCC	1 cut(s)	334
BsiHKAI	GWGCWC	3 cut(s)	294, 555, 903
BsiSI	CCGG	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	707
BsnI	GGCC	4 cut(s)	345, 505, 812, 833
Bsp119I	TTCGAA	1 cut(s)	711
Bsp1286I	GDGCHC	7 cut(s)	252, 294, 339, 457, 536, 555, 903
Bsp143I	GATC	7 cut(s)	60, 208, 214, 526, 739, 745, 778
BspACI	CCGC	3 cut(s)	386, 697, 734
BspANI	GGCC	4 cut(s)	345, 505, 812, 833
BspCNI	CTCAG	2 cut(s)	343, 435
BspLI	GGNNCC	2 cut(s)	34, 336
BspPI	GGATC	1 cut(s)	203
BspT104I	TTCGAA	1 cut(s)	711
BspT107I	GGYRCC	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	326, 544
BssECI	CCNNGG	2 cut(s)	468, 585
BssMI	GATC	7 cut(s)	60, 208, 214, 526, 739, 745, 778
BssNAI	GTATAC	1 cut(s)	945
BssT1I	CCWWGG	1 cut(s)	585
Bst1107I	GTATAC	1 cut(s)	945
Bst4CI	ACNGT	3 cut(s)	266, 764, 949
BstBI	TTCGAA	1 cut(s)	711
BstC8I	GCNNGC	4 cut(s)	290, 386, 503, 911
BstDEI	CTNAG	5 cut(s)	104, 330, 375, 443, 556
BstF5I	GGATG	3 cut(s)	73, 506, 880
BstKTI	GATC	7 cut(s)	63, 211, 217, 529, 742, 748, 781
BstMBI	GATC	7 cut(s)	60, 208, 214, 526, 739, 745, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 390
BstNSI	RCATGY	4 cut(s)	80, 224, 628, 757
BstSCI	CCNGG	1 cut(s)	250
BstSLI	GKGCMC	5 cut(s)	252, 294, 339, 457, 536
BstV1I	GCAGC	2 cut(s)	393, 814
BstV2I	GAAGAC	1 cut(s)	308
BstZ17I	GTATAC	1 cut(s)	945
BsuI	GTATCC	1 cut(s)	718
BsuRI	GGCC	4 cut(s)	345, 505, 812, 833
BtsCI	GGATG	3 cut(s)	73, 506, 880
BtsI	GCAGTG	2 cut(s)	395, 802
BtsIMutI	CAGTG	4 cut(s)	319, 395, 510, 802
Cac8I	GCNNGC	4 cut(s)	290, 386, 503, 911
Cfr13I	GGNCC	3 cut(s)	32, 266, 694
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	927
CviQI	GTAC	1 cut(s)	927
DdeI	CTNAG	5 cut(s)	104, 330, 375, 443, 556
DpnI	GATC	7 cut(s)	62, 210, 216, 528, 741, 747, 780
DpnII	GATC	7 cut(s)	60, 208, 214, 526, 739, 745, 778
DriI	GACNNNNNGTC	1 cut(s)	580
EaeI	YGGCCR	2 cut(s)	810, 831
Eam1105I	GACNNNNNGTC	1 cut(s)	580
Ecl136II	GAGCTC	2 cut(s)	553, 901
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	2 cut(s)	555, 903
Eco47I	GGWCC	3 cut(s)	32, 266, 694
Eco53kI	GAGCTC	2 cut(s)	553, 901
EcoICRI	GAGCTC	2 cut(s)	553, 901
EcoO109I	RGGNCCY	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	2 cut(s)	555, 903
ErhI	CCWWGG	1 cut(s)	585
FauI	CCCGC	1 cut(s)	393
FbaI	TGATCA	2 cut(s)	526, 778
FblI	GTMKAC	1 cut(s)	944
Fnu4HI	GCNGC	3 cut(s)	382, 735, 803
FokI	GGATG	3 cut(s)	80, 493, 887
FriOI	GRGCYC	2 cut(s)	555, 903
Fsp4HI	GCNGC	3 cut(s)	382, 735, 803
FspBI	CTAG	2 cut(s)	87, 933
GluI	GCNGC	3 cut(s)	382, 735, 803
HaeIII	GGCC	4 cut(s)	345, 505, 812, 833
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	410
HinfI	GANTC	3 cut(s)	825, 836, 848
HpaII	CCGG	1 cut(s)	252
Hpy166II	GTNNAC	2 cut(s)	292, 945
Hpy188I	TCNGA	2 cut(s)	423, 444
Hpy188III	TCNNGA	4 cut(s)	30, 206, 212, 743
Hpy8I	GTNNAC	2 cut(s)	292, 945
HpyAV	CCTTC	3 cut(s)	502, 628, 671
HpyCH4III	ACNGT	3 cut(s)	266, 764, 949
HpyCH4V	TGCA	4 cut(s)	292, 415, 647, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 390
HpyF3I	CTNAG	5 cut(s)	104, 330, 375, 443, 556
Ksp22I	TGATCA	2 cut(s)	526, 778
Kzo9I	GATC	7 cut(s)	60, 208, 214, 526, 739, 745, 778
LpnPI	CCDG	8 cut(s)	15, 265, 292, 307, 317, 487, 515, 557
Lsp1109I	GCAGC	2 cut(s)	393, 814
LweI	GCATC	2 cut(s)	58, 721
MaeI	CTAG	2 cut(s)	87, 933
MaeIII	GTNAC	3 cut(s)	94, 156, 666
MalI	GATC	7 cut(s)	62, 210, 216, 528, 741, 747, 780
MboI	GATC	7 cut(s)	60, 208, 214, 526, 739, 745, 778
MboII	GAAGA	3 cut(s)	142, 297, 308
MhlI	GDGCHC	7 cut(s)	252, 294, 339, 457, 536, 555, 903
MlsI	TGGCCA	1 cut(s)	812
MluCI	AATT	4 cut(s)	613, 653, 658, 718
MluNI	TGGCCA	1 cut(s)	812
MlyI	GAGTC	2 cut(s)	834, 845
MnlI	CCTC	8 cut(s)	134, 438, 444, 463, 467, 595, 643, 871
Mox20I	TGGCCA	1 cut(s)	812
MscI	TGGCCA	1 cut(s)	812
MseI	TTAA	3 cut(s)	569, 612, 885
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	812
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	707
MwoI	GCNNNNNNNGC	2 cut(s)	77, 390
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	7 cut(s)	60, 208, 214, 526, 739, 745, 778
NlaIV	GGNNCC	2 cut(s)	34, 336
NmeAIII	GCCGAG	2 cut(s)	493, 859
NmuCI	GTSAC	1 cut(s)	156
NspI	RCATGY	4 cut(s)	80, 224, 628, 757
NspV	TTCGAA	1 cut(s)	711
PctI	GAATGC	1 cut(s)	707
PfeI	GAWTC	1 cut(s)	848
PkrI	GCNGC	3 cut(s)	383, 736, 804
PleI	GAGTC	2 cut(s)	833, 844
PpsI	GAGTC	2 cut(s)	833, 844
PpuMI	RGGWCCY	1 cut(s)	32
PshBI	ATTAAT	1 cut(s)	569
PsiI	TTATAA	1 cut(s)	596
Psp124BI	GAGCTC	2 cut(s)	555, 903
Psp5II	RGGWCCY	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	34, 336
PspPI	GGNCC	3 cut(s)	32, 266, 694
PspPPI	RGGWCCY	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	1 cut(s)	928
RsaNI	GTAC	1 cut(s)	927
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	2 cut(s)	555, 903
SaqAI	TTAA	3 cut(s)	569, 612, 885
SatI	GCNGC	3 cut(s)	382, 735, 803
Sau3AI	GATC	7 cut(s)	60, 208, 214, 526, 739, 745, 778
Sau96I	GGNCC	3 cut(s)	32, 266, 694
ScaI	AGTACT	1 cut(s)	928
SchI	GAGTC	2 cut(s)	834, 845
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	7 cut(s)	252, 294, 339, 457, 536, 555, 903
SfaNI	GCATC	2 cut(s)	58, 721
SfuI	TTCGAA	1 cut(s)	711
SinI	GGWCC	3 cut(s)	32, 266, 694
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	613, 653, 658, 718
SsiI	CCGC	3 cut(s)	386, 697, 734
SspMI	CTAG	2 cut(s)	87, 933
SstI	GAGCTC	2 cut(s)	555, 903
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	3 cut(s)	266, 764, 949
TaqI	TCGA	5 cut(s)	449, 549, 711, 744, 846
TasI	AATT	4 cut(s)	613, 653, 658, 718
TatI	WGTACW	1 cut(s)	926
TauI	GCSGC	1 cut(s)	737
TfiI	GAWTC	1 cut(s)	848
Tru1I	TTAA	3 cut(s)	569, 612, 885
Tru9I	TTAA	3 cut(s)	569, 612, 885
TscAI	CASTG	4 cut(s)	326, 395, 517, 802
TseFI	GTSAC	1 cut(s)	156
TseI	GCWGC	2 cut(s)	381, 802
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	5 cut(s)	142, 290, 484, 630, 676
TspGWI	ACGGA	2 cut(s)	222, 424
TspRI	CASTG	4 cut(s)	326, 395, 517, 802
VneI	GTGCAC	1 cut(s)	290
VpaK11BI	GGWCC	3 cut(s)	32, 266, 694
VspI	ATTAAT	1 cut(s)	569
XapI	RAATTY	1 cut(s)	658
XceI	RCATGY	4 cut(s)	80, 224, 628, 757
XmiI	GTMKAC	1 cut(s)	944
XspI	CTAG	2 cut(s)	87, 933
ZrmI	AGTACT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.