Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Forward (+)

8059978 .. 8061689

Gene Structure 1712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAGCTGGTGCAGATACTTCACATGAACAAAGGCAACGGCGAGGCCAGTTATGCCCAAAATTCCAAAGTTCAGGTAACTATATATACAGAGAACAAAATATTAGCAATCACAAAGCCAATCATGGAGAAAGCCTTGCTCGAACTGTTGGGGTCAAACCGTGTTATGGCAATGGAGAGTATGGGCATAGCGGATTTGGGTTGCTCATCTGGACCTAACACCTTGCTTGTGATATCGGAGATCATGGATGTCATACATGCCCAACTCAGCAGTGGCCAGCTGCATCCCTCGTCGTCGTCAATGGAGTTTAGAGTGTTTCTCAACGACCTATTCAGCAACGACTTCAACACCGTCTTCATGACACTTCCCGCATTCTACAACAAGCTGAGACAAGACGATCGCTACAAGAGATTGTTTGGGGCTAACCCCAACCTCTTCATTTCCGCTGTGCCGGGCTCTTTCTACGGCAGATTGTTTGCCAGAAAAAGCCTGCATTTCGTGCACTCGTCCTCCAGTCTTCACTGGCTCTCTCAGGTTCCCCCGAGCCTGGACAGCAAGGCCGGCACGGCCTTGAACAAGGGGAAGATCTACATTTCTAAGAGCAGTCCGCAATGCGTATTGGATGCGTACTCACTTCAATTCCACGAGGACTTTTTGCTGTTTCTCAAGTCTCGGGCAGAAGAAATAGTTGGAGGAGGAAGAATGGTCTTGTCATTCATGGGCAGGCCAACACTTGACCCTACAACCGAACAGAGTTGCTACCAGTGGGAACTCTTGGCCCTTGCATTGATGAGCATGGTTTCAGATGGTCTTGTGGAAGAGGACAAAGTTGATTCCTTCAACGCTCCCTACTATGCCCCATGTGCAGAGGAACTGAAGTCGGAGTTGCAAAAGGACGACTCCTTCATCATGGACCGACTTGAAGCGTTCGAAATGGATTGGGGCGGTGGTGGTGATGTTGTTGATGATCAAGCTAATATCGTTAATGGTTTTAATCATGATCAGATGGTGGCTATTAGTGGGAAGCGGGTGGCCAAAACCGTAAGAGCGGTGGTAGAGTCAATGATCGAAGCTCATTTCGGGATAGAAATTATGGATGATCTGTTTCAGAGGTACACGGAGCTCGTCACCAATCACTTGTCAAAGAGGAGAACCAAGTATATCAATTTGGTCATATCACTGATAAGAAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

398

Amino Acids

44.62

Weight (kDa)

5.54

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	57 - 396	8.2e-123	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1049
AciI	CCGC	7 cut(s)	191, 369, 444, 608, 945, 1027, 1049
AcoI	YGGCCR	2 cut(s)	274, 1032
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	896
AfaI	GTAC	2 cut(s)	629, 1115
AfiI	CCNNNNNNNGG	2 cut(s)	166, 547
AgsI	TTSAA	5 cut(s)	346, 574, 638, 841, 923
AjnI	CCWGG	1 cut(s)	546
AjuI	GAANNNNNNNTTGG	2 cut(s)	672, 704
AluBI	AGCT	6 cut(s)	7, 280, 385, 974, 1073, 1123
AluI	AGCT	6 cut(s)	7, 280, 385, 974, 1073, 1123
Alw21I	GWGCWC	2 cut(s)	504, 1125
Alw26I	GTCTC	2 cut(s)	382, 675
Alw44I	GTGCAC	1 cut(s)	500
Ama87I	CYCGRG	2 cut(s)	541, 672
AoxI	GGCC	7 cut(s)	45, 274, 558, 567, 725, 777, 1032
ApaLI	GTGCAC	1 cut(s)	500
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	1 cut(s)	61
AspS9I	GGNCC	3 cut(s)	212, 778, 913
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	965, 1120
AsuII	TTCGAA	1 cut(s)	930
AvaI	CYCGRG	2 cut(s)	541, 672
AvaII	GGWCC	2 cut(s)	212, 913
BaeGI	GKGCMC	1 cut(s)	504
BalI	TGGCCA	2 cut(s)	276, 1034
BanII	GRGCYC	2 cut(s)	458, 1125
BauI	CACGAG	1 cut(s)	644
BbsI	GAAGAC	2 cut(s)	346, 509
Bbv12I	GWGCWC	2 cut(s)	504, 1125
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	2 cut(s)	800, 1000
BceAI	ACGGC	3 cut(s)	55, 481, 582
BciT130I	CCWGG	1 cut(s)	548
BclI	TGATCA	2 cut(s)	967, 1000
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	382, 675
BglI	GCCNNNNNGGC	1 cut(s)	566
BglII	AGATCT	1 cut(s)	585
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	2 cut(s)	453, 548
Bme18I	GGWCC	2 cut(s)	212, 913
BmeT110I	CYCGRG	2 cut(s)	541, 672
BmgT120I	GGNCC	3 cut(s)	212, 778, 913
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	2 cut(s)	453, 548
BmsI	GCATC	2 cut(s)	292, 613
BpiI	GAAGAC	2 cut(s)	346, 509
BplI	GAGNNNNNCTC	2 cut(s)	303, 335
BpmI	CTGGAG	1 cut(s)	496
Bpu14I	TTCGAA	1 cut(s)	930
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 547
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	4 cut(s)	48, 513, 527, 763
Bse3DI	GCAATG	2 cut(s)	177, 617
BseBI	CCWGG	1 cut(s)	548
BseGI	GGATG	4 cut(s)	253, 283, 628, 1102
BseLI	CCNNNNNNNGG	2 cut(s)	166, 547
BseMI	GCAATG	2 cut(s)	177, 617
BseMII	CTCAG	3 cut(s)	280, 377, 545
BseNI	ACTGG	4 cut(s)	48, 513, 527, 763
BseRI	GAGGAG	2 cut(s)	708, 1162
BseSI	GKGCMC	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	267
BsgI	GTGCAG	2 cut(s)	32, 885
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	7 cut(s)	47, 276, 560, 569, 727, 779, 1034
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	2 cut(s)	504, 1125
BsiHKCI	CYCGRG	2 cut(s)	541, 672
BsiSI	CCGG	2 cut(s)	452, 561
BslI	CCNNNNNNNGG	2 cut(s)	166, 547
BsmAI	GTCTC	2 cut(s)	382, 675
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	7 cut(s)	47, 276, 560, 569, 727, 779, 1034
BsoBI	CYCGRG	2 cut(s)	541, 672
Bsp119I	TTCGAA	1 cut(s)	930
Bsp1286I	GDGCHC	3 cut(s)	458, 504, 1125
Bsp143I	GATC	7 cut(s)	240, 397, 585, 967, 1000, 1065, 1099
BspACI	CCGC	7 cut(s)	191, 369, 444, 608, 945, 1027, 1049
BspANI	GGCC	7 cut(s)	47, 276, 560, 569, 727, 779, 1034
BspCNI	CTCAG	3 cut(s)	279, 378, 544
BspHI	TCATGA	2 cut(s)	357, 997
BspLI	GGNNCC	1 cut(s)	537
BspT104I	TTCGAA	1 cut(s)	930
BsrBI	CCGCTC	1 cut(s)	1049
BsrDI	GCAATG	2 cut(s)	177, 617
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	4 cut(s)	48, 513, 527, 763
BssAI	RCCGGY	1 cut(s)	560
BssMI	GATC	7 cut(s)	240, 397, 585, 967, 1000, 1065, 1099
BssSI	CACGAG	1 cut(s)	644
Bst2BI	CACGAG	1 cut(s)	644
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	4 cut(s)	147, 161, 352, 1042
Bst6I	CTCTTC	2 cut(s)	440, 813
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstBI	TTCGAA	1 cut(s)	930
BstC8I	GCNNGC	4 cut(s)	278, 491, 562, 725
BstDEI	CTNAG	4 cut(s)	266, 386, 531, 597
BstF5I	GGATG	4 cut(s)	253, 283, 628, 1102
BstKTI	GATC	7 cut(s)	243, 400, 588, 970, 1003, 1068, 1102
BstMAI	GTCTC	2 cut(s)	382, 675
BstMBI	GATC	7 cut(s)	240, 397, 585, 967, 1000, 1065, 1099
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 499, 552, 561, 566, 863
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	451, 546
BstSLI	GKGCMC	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	267
BstV2I	GAAGAC	2 cut(s)	346, 509
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuRI	GGCC	7 cut(s)	47, 276, 560, 569, 727, 779, 1034
BtsCI	GGATG	4 cut(s)	253, 283, 628, 1102
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	4 cut(s)	277, 520, 770, 1178
Cac8I	GCNNGC	4 cut(s)	278, 491, 562, 725
CciI	TCATGA	2 cut(s)	357, 997
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	3 cut(s)	212, 778, 913
Csp6I	GTAC	2 cut(s)	628, 1114
CviQI	GTAC	2 cut(s)	628, 1114
DdeI	CTNAG	4 cut(s)	266, 386, 531, 597
DpnI	GATC	7 cut(s)	242, 399, 587, 969, 1002, 1067, 1101
DpnII	GATC	7 cut(s)	240, 397, 585, 967, 1000, 1065, 1099
EaeI	YGGCCR	2 cut(s)	274, 1032
Eam1104I	CTCTTC	2 cut(s)	440, 813
EarI	CTCTTC	2 cut(s)	440, 813
Ecl136II	GAGCTC	1 cut(s)	1123
Eco24I	GRGCYC	2 cut(s)	458, 1125
Eco32I	GATATC	1 cut(s)	234
Eco47I	GGWCC	2 cut(s)	212, 913
Eco53kI	GAGCTC	1 cut(s)	1123
Eco57I	CTGAAG	1 cut(s)	896
Eco88I	CYCGRG	2 cut(s)	541, 672
EcoICRI	GAGCTC	1 cut(s)	1123
EcoRII	CCWGG	1 cut(s)	546
EcoRV	GATATC	1 cut(s)	234
EcoT38I	GRGCYC	2 cut(s)	458, 1125
FauI	CCCGC	2 cut(s)	376, 1020
FbaI	TGATCA	2 cut(s)	967, 1000
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	4 cut(s)	260, 270, 635, 1109
FriOI	GRGCYC	2 cut(s)	458, 1125
Fsp4HI	GCNGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	496
HaeIII	GGCC	7 cut(s)	47, 276, 560, 569, 727, 779, 1034
HapII	CCGG	2 cut(s)	452, 561
HinfI	GANTC	3 cut(s)	833, 899, 1058
HpaII	CCGG	2 cut(s)	452, 561
HphI	GGTGA	2 cut(s)	965, 1120
Hpy166II	GTNNAC	2 cut(s)	502, 1116
Hpy188I	TCNGA	5 cut(s)	238, 805, 883, 1005, 1110
Hpy188III	TCNNGA	4 cut(s)	210, 358, 998, 1081
Hpy8I	GTNNAC	2 cut(s)	502, 1116
Hpy99I	CGWCG	2 cut(s)	295, 298
HpyAV	CCTTC	3 cut(s)	847, 913, 1182
HpyCH4III	ACNGT	4 cut(s)	147, 161, 352, 1042
HpyCH4V	TGCA	7 cut(s)	13, 283, 493, 502, 785, 866, 889
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 499, 552, 561, 566, 863
HpyF3I	CTNAG	4 cut(s)	266, 386, 531, 597
KroI	GCCGGC	1 cut(s)	560
KroNI	GCCGGC	1 cut(s)	562
Ksp22I	TGATCA	2 cut(s)	967, 1000
Kzo9I	GATC	7 cut(s)	240, 397, 585, 967, 1000, 1065, 1099
LmnI	GCTCC	3 cut(s)	4, 850, 1120
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	2 cut(s)	292, 613
MaeIII	GTNAC	2 cut(s)	76, 1126
MalI	GATC	7 cut(s)	242, 399, 587, 969, 1002, 1067, 1101
MbiI	CCGCTC	1 cut(s)	1049
MboI	GATC	7 cut(s)	240, 397, 585, 967, 1000, 1065, 1099
MboII	GAAGA	7 cut(s)	346, 427, 509, 595, 692, 711, 830
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	3 cut(s)	458, 504, 1125
MlsI	TGGCCA	2 cut(s)	276, 1034
MluCI	AATT	4 cut(s)	61, 638, 1089, 1165
MluNI	TGGCCA	2 cut(s)	276, 1034
MlyI	GAGTC	2 cut(s)	893, 1067
MmeI	TCCRAC	2 cut(s)	670, 861
Mox20I	TGGCCA	2 cut(s)	276, 1034
MroNI	GCCGGC	1 cut(s)	560
MscI	TGGCCA	2 cut(s)	276, 1034
MseI	TTAA	2 cut(s)	984, 993
Msp20I	TGGCCA	2 cut(s)	276, 1034
MspA1I	CMGCKG	2 cut(s)	280, 446
MspI	CCGG	2 cut(s)	452, 561
MspR9I	CCNGG	2 cut(s)	453, 548
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	6 cut(s)	53, 499, 552, 561, 566, 863
NaeI	GCCGGC	1 cut(s)	562
NciI	CCSGG	1 cut(s)	453
NdeII	GATC	7 cut(s)	240, 397, 585, 967, 1000, 1065, 1099
NgoMIV	GCCGGC	1 cut(s)	560
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	1126
NspI	RCATGY	1 cut(s)	260
NspV	TTCGAA	1 cut(s)	930
PagI	TCATGA	2 cut(s)	357, 997
PctI	GAATGC	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	562
PfeI	GAWTC	1 cut(s)	833
PkrI	GCNGC	1 cut(s)	282
Ple19I	CGATCG	1 cut(s)	400
PleI	GAGTC	2 cut(s)	893, 1066
PpsI	GAGTC	2 cut(s)	893, 1066
Psp124BI	GAGCTC	1 cut(s)	1125
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	3 cut(s)	212, 778, 913
PsuI	RGATCY	1 cut(s)	585
PvuI	CGATCG	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	280
RsaI	GTAC	2 cut(s)	629, 1115
RsaNI	GTAC	2 cut(s)	628, 1114
SacI	GAGCTC	1 cut(s)	1125
SaqAI	TTAA	2 cut(s)	984, 993
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	7 cut(s)	240, 397, 585, 967, 1000, 1065, 1099
Sau96I	GGNCC	3 cut(s)	212, 778, 913
SchI	GAGTC	2 cut(s)	893, 1067
ScrFI	CCNGG	2 cut(s)	453, 548
SduI	GDGCHC	3 cut(s)	458, 504, 1125
SfaNI	GCATC	2 cut(s)	292, 613
SfiI	GGCCNNNNNGGCC	1 cut(s)	566
SfuI	TTCGAA	1 cut(s)	930
SinI	GGWCC	2 cut(s)	212, 913
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
Sse9I	AATT	4 cut(s)	61, 638, 1089, 1165
SsiI	CCGC	7 cut(s)	191, 369, 444, 608, 945, 1027, 1049
SspI	AATATT	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	1125
StyD4I	CCNGG	2 cut(s)	451, 546
TaaI	ACNGT	4 cut(s)	147, 161, 352, 1042
TaqI	TCGA	3 cut(s)	141, 930, 1068
TaqII	GACCGA	1 cut(s)	930
TasI	AATT	4 cut(s)	61, 638, 1089, 1165
TfiI	GAWTC	1 cut(s)	833
Tru1I	TTAA	2 cut(s)	984, 993
Tru9I	TTAA	2 cut(s)	984, 993
TscAI	CASTG	4 cut(s)	277, 527, 770, 1185
TseFI	GTSAC	1 cut(s)	1126
TseI	GCWGC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	1126
TspDTI	ATGAA	5 cut(s)	41, 346, 427, 706, 895
TspGWI	ACGGA	1 cut(s)	1133
TspRI	CASTG	4 cut(s)	277, 527, 770, 1185
VneI	GTGCAC	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	212, 913
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.