Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Reverse (-)

61265396 .. 61267684

Gene Structure 2289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG432500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTTCTGTCATTCATGGGAAGGCGATTGTCAGACCCCACAATTGAAGAGGGTTGCTATCTCCAGTGGGAGCTCTTAGCCAATGCATTAATGACCTTGGTTTTAGAGGGCTCTATTGAAGAAGAAAAAGTTGAATCGTTCCATGCTCCCTACTATGCTCCATGTCCGGACGAATTGAATTTGCAGTTACAAAAAGAAGGATCATTCGTAATGGACCGCCTTGAAGCATTCGAAATTGATTGGGATGGTGGTACTGATCTGGATAAAAACATGAAAAACACAACCAATGAAACCGTAGCAAGCAGTGGCGAGCGAGTAGCCAAGACCATAAGAGCCGTGGTGGAGTCAATGCTCGAGTCTCATTTTGGTGAAGATCTTATGATGGATACTTTGTTTCAGAGGTACGCAGAGCTCGTCAGCGATCGCTTGTCAAAATCTAGAACCAAGTACATCAACTTGGTCATTTCACTCATTAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

160

Amino Acids

18.25

Weight (kDa)

4.58

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	1 - 159	9.6e-42	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	3 cut(s)	253, 404, 449
AgsI	TTSAA	5 cut(s)	47, 119, 134, 178, 224
AluBI	AGCT	2 cut(s)	73, 412
AluI	AGCT	2 cut(s)	73, 412
Alw21I	GWGCWC	2 cut(s)	75, 414
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	353
Aor13HI	TCCGGA	1 cut(s)	166
ApoI	RAATTY	1 cut(s)	178
AseI	ATTAAT	1 cut(s)	89
AsiSI	GCGATCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	380
AsuII	TTCGAA	1 cut(s)	231
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	214
BanII	GRGCYC	3 cut(s)	75, 113, 414
Bbv12I	GWGCWC	2 cut(s)	75, 414
BccI	CCATC	2 cut(s)	239, 376
BceAI	ACGGC	1 cut(s)	320
BciVI	GTATCC	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	379
BglII	AGATCT	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	96, 336
BsaWI	WCCGGW	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	64
BseAI	TCCGGA	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	96, 336
BseGI	GGATG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	64
Bsh1285I	CGRYCG	1 cut(s)	424
BsiEI	CGRYCG	1 cut(s)	424
BsiHKAI	GWGCWC	2 cut(s)	75, 414
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	3 cut(s)	75, 113, 414
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	4 cut(s)	200, 256, 373, 421
BspACI	CCGC	1 cut(s)	217
BspEI	TCCGGA	1 cut(s)	166
BspPI	GGATC	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	96, 336
BssMI	GATC	4 cut(s)	200, 256, 373, 421
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	301, 311
BstDEI	CTNAG	1 cut(s)	76
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	4 cut(s)	203, 259, 376, 424
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	4 cut(s)	200, 256, 373, 421
BstMCI	CGRYCG	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuI	GTATCC	1 cut(s)	379
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	71, 310
Cac8I	GCNNGC	2 cut(s)	301, 311
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	252, 403, 448
CviAII	CATG	4 cut(s)	16, 143, 162, 271
CviJI	RGCY	6 cut(s)	73, 80, 111, 320, 335, 412
CviKI_1	RGCY	6 cut(s)	73, 80, 111, 320, 335, 412
CviQI	GTAC	3 cut(s)	252, 403, 448
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	4 cut(s)	202, 258, 375, 423
DpnII	GATC	4 cut(s)	200, 256, 373, 421
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Ecl136II	GAGCTC	2 cut(s)	73, 412
Eco130I	CCWWGG	1 cut(s)	96
Eco24I	GRGCYC	3 cut(s)	75, 113, 414
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	2 cut(s)	73, 412
Eco88I	CYCGRG	1 cut(s)	353
EcoICRI	GAGCTC	2 cut(s)	73, 412
EcoT14I	CCWWGG	1 cut(s)	96
EcoT22I	ATGCAT	1 cut(s)	88
EcoT38I	GRGCYC	3 cut(s)	75, 113, 414
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	4 cut(s)	19, 146, 165, 274
FaiI	YATR	7 cut(s)	17, 144, 156, 163, 272, 329, 380
FatI	CATG	4 cut(s)	15, 142, 161, 270
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	3 cut(s)	75, 113, 414
FspBI	CTAG	1 cut(s)	438
GsuI	CTGGAG	1 cut(s)	47
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	4 cut(s)	19, 146, 165, 274
HinfI	GANTC	3 cut(s)	134, 344, 356
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	380
Hpy188I	TCNGA	2 cut(s)	34, 399
Hpy188III	TCNNGA	3 cut(s)	167, 260, 438
HpyAV	CCTTC	2 cut(s)	15, 191
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	86, 184
HpyF3I	CTNAG	1 cut(s)	76
Hsp92II	CATG	4 cut(s)	19, 146, 165, 274
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	200, 256, 373, 421
LmnI	GCTCC	3 cut(s)	70, 151, 163
LpnPI	CCDG	3 cut(s)	77, 180, 245
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	4 cut(s)	202, 258, 375, 423
MboI	GATC	4 cut(s)	200, 256, 373, 421
MboII	GAAGA	4 cut(s)	59, 131, 134, 383
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	3 cut(s)	75, 113, 414
MluCI	AATT	4 cut(s)	42, 173, 178, 234
MlyI	GAGTC	2 cut(s)	353, 365
MnlI	CCTC	3 cut(s)	43, 100, 393
Mph1103I	ATGCAT	1 cut(s)	88
MroI	TCCGGA	1 cut(s)	166
MseI	TTAA	2 cut(s)	89, 474
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	227
NdeII	GATC	4 cut(s)	200, 256, 373, 421
NlaIII	CATG	4 cut(s)	19, 146, 165, 274
NsiI	ATGCAT	1 cut(s)	88
NspV	TTCGAA	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PctI	GAATGC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	134
Ple19I	CGATCG	1 cut(s)	424
PleI	GAGTC	2 cut(s)	352, 364
PpsI	GAGTC	2 cut(s)	352, 364
PshBI	ATTAAT	1 cut(s)	89
Psp124BI	GAGCTC	2 cut(s)	75, 414
PspPI	GGNCC	1 cut(s)	214
PspXI	VCTCGAGB	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	373
PvuI	CGATCG	1 cut(s)	424
RgaI	GCGATCGC	1 cut(s)	424
RsaI	GTAC	3 cut(s)	253, 404, 449
RsaNI	GTAC	3 cut(s)	252, 403, 448
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	2 cut(s)	75, 414
SaqAI	TTAA	2 cut(s)	89, 474
Sau3AI	GATC	4 cut(s)	200, 256, 373, 421
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	2 cut(s)	353, 365
SduI	GDGCHC	3 cut(s)	75, 113, 414
SetI	ASST	4 cut(s)	75, 98, 404, 414
SfaAI	GCGATCGC	1 cut(s)	424
Sfr274I	CTCGAG	1 cut(s)	353
SfuI	TTCGAA	1 cut(s)	231
SgfI	GCGATCGC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	214
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	4 cut(s)	42, 173, 178, 234
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	2 cut(s)	75, 414
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	2 cut(s)	231, 354
TasI	AATT	4 cut(s)	42, 173, 178, 234
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	89, 474
Tru9I	TTAA	2 cut(s)	89, 474
TscAI	CASTG	2 cut(s)	71, 310
TspDTI	ATGAA	3 cut(s)	4, 287, 303
TspRI	CASTG	2 cut(s)	71, 310
VpaK11BI	GGWCC	1 cut(s)	214
VspI	ATTAAT	1 cut(s)	89
XapI	RAATTY	1 cut(s)	178
XbaI	TCTAGA	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	353
XspI	CTAG	1 cut(s)	438
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.