Rh4DG391800

Jasmonate O-methyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001051
Physical Location & Seq
Reverse (-)
60782117 .. 60783801
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG391800.1

Sequence Viewer

Length: 1221 bp
ATGAAGTTTATAAAATCTCAACCTCGAACCACTCCTGCAGAGCCTAGTTACATCGATCGATCGCCTGACAGAGTTGGAGAGATGGAGGTGACGCAAATACTTCACATGAACAACGGAGATGACGAGACTAGCTATGCCAAAAACTCTACAGTTCAGAGAAAAACATTATCCATAGCCAAGCCGATCATTGAGGAAGCAGTGCTAGAACTCTTGGGATCCAATATCATGGCAATAGAGAGCATGGGAATAGCAGATTTGGGTTGCTCATCCGGACCCAACACCTTACTACTCATCTCGCAGATCATGGATGCCATACATGCTATACCTAGCAAAGTTACAGAGCTTAGAGTGTTTCTAAATGACCTCTTTAGCAACGACTTCAACTCCATCTTCATGTCACTCCCATCATTCTACCAAAAACTGAAACAAGACTATGATAATAGTCGTGATCCCGATCAGCATGTCATAAATCCGTTGATTTCTGCTGTGCCCGGTTCGTTTTACGGTCCATTGTTTCCCAGAAAGAGCGTGCACTTTGTTCATTCTTCTTTTAGTCTTCACTGGCTCTCTCAGGTGCCCGATGGCCTAAACAACAAAGGAAATATATACATTTCTAAGAGCAGCCCGCAGTGCGTATTAGACGCATACTCCATGCAGTTTCAGAAAGACTTTTCCGTTTTTCTGAGGTTTAGGGCACAAGAAATAGCCGAGGGAGGACGAATGGTGTTGTCCTTCATGGGCAGGCCATCCACTGACCCAACAGCTGATCAGGGCACTTTCTACCAGTTCGAGCTCTTAGCCCACGCATTAATGGACACGGTGTCCAAGGGTCTTATAAAAGAGGAAATGGTTAATTCCTTCAACATGCCCTACTATACTTCATGTGCAGAGGAATTGAATTTGGTGTTACAAAAAGAAGGGTCTTTCATCAAGGACCGCCTTGAAGCATTCGAAGTGAATTGGGATACTGGTGGTGCTGATCTCGATCACAACATGCCTAACGGTGCATTTGACCATGATCAAACAATAACAAGCAGTGGGCAGCGAGTGGCCAATAGCATAAGAGTCGTGGCCGAGTCAATGCTCGAATCTCATTTTGGAAAAGAGATAATGGATGAGGTGTTTAAGAAATATACAGAGCTCGTTAGCAAGCACTTATCAAATAGTACTACTAGACCCAAGTATACAGTTTTGGTCACCTCACTCATTCGAAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

406

Amino Acids

45.6

Weight (kDa)

5.51

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 74 - 404 9.6e-113 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 11, 836
AccB1I GGYRCC 1 cut(s) 574
AccI GTMKAC 1 cut(s) 1184
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 2 cut(s) 626, 937
AclWI GGATC 3 cut(s) 210, 223, 443
AcoI YGGCCR 2 cut(s) 1050, 1071
AcsI RAATTY 1 cut(s) 898
AfaI GTAC 1 cut(s) 1168
AgsI TTSAA 4 cut(s) 382, 862, 898, 944
AhdI GACNNNNNGTC 1 cut(s) 820
AjuI GAANNNNNNNTTGG 2 cut(s) 1080, 1112
AluBI AGCT 5 cut(s) 132, 343, 764, 793, 1141
AluI AGCT 5 cut(s) 132, 343, 764, 793, 1141
Alw21I GWGCWC 3 cut(s) 534, 795, 1143
Alw26I GTCTC 1 cut(s) 119
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 3 cut(s) 210, 223, 443
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 4 cut(s) 583, 743, 1050, 1071
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 2 cut(s) 621, 1042
ApoI RAATTY 1 cut(s) 898
AseI ATTAAT 1 cut(s) 809
AspS9I GGNCC 3 cut(s) 272, 506, 934
AsuC2I CCSGG 1 cut(s) 492
AsuHPI GGTGA 2 cut(s) 100, 1189
AsuII TTCGAA 2 cut(s) 951, 1210
AvaII GGWCC 3 cut(s) 272, 506, 934
BaeGI GKGCMC 5 cut(s) 492, 534, 579, 697, 776
BalI TGGCCA 1 cut(s) 1052
BamHI GGATCC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 574
BanII GRGCYC 2 cut(s) 795, 1143
BbsI GAAGAC 1 cut(s) 548
Bbv12I GWGCWC 3 cut(s) 534, 795, 1143
BbvI GCAGC 2 cut(s) 633, 1054
BccI CCATC 5 cut(s) 76, 395, 412, 575, 754
BcgI CGANNNNNNTGC 2 cut(s) 1048, 1082
BciVI GTATCC 1 cut(s) 958
BclI TGATCA 2 cut(s) 766, 1018
BcnI CCSGG 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 5 cut(s) 45, 129, 203, 327, 1173
BfmI CTRYAG 2 cut(s) 36, 147
BfuI GTATCC 1 cut(s) 958
BisI GCNGC 2 cut(s) 622, 1043
BlsI GCNGC 2 cut(s) 623, 1044
BmcAI AGTACT 1 cut(s) 1168
Bme1390I CCNGG 1 cut(s) 492
Bme18I GGWCC 3 cut(s) 272, 506, 934
BmeRI GACNNNNNGTC 1 cut(s) 820
BmgT120I GGNCC 3 cut(s) 272, 506, 934
BmiI GGNNCC 3 cut(s) 217, 274, 576
BmrFI CCNGG 1 cut(s) 492
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 548
Bpu14I TTCGAA 2 cut(s) 951, 1210
BpuMI CCSGG 1 cut(s) 492
Bsa29I ATCGAT 2 cut(s) 54, 58
BsaBI GATNNNNATC 2 cut(s) 453, 984
BsaJI CCNNGG 2 cut(s) 708, 825
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 4 cut(s) 368, 398, 632, 662
Bse1I ACTGG 3 cut(s) 566, 784, 973
Bse8I GATNNNNATC 2 cut(s) 453, 984
BseAI TCCGGA 1 cut(s) 269
BseCI ATCGAT 2 cut(s) 54, 58
BseDI CCNNGG 2 cut(s) 708, 825
BseGI GGATG 4 cut(s) 266, 313, 746, 1120
BseJI GATNNNNATC 2 cut(s) 453, 984
BseMII CTCAG 2 cut(s) 584, 674
BseNI ACTGG 3 cut(s) 566, 784, 973
BseSI GKGCMC 5 cut(s) 492, 534, 579, 697, 776
BseXI GCAGC 2 cut(s) 633, 1054
BsgI GTGCAG 1 cut(s) 906
Bsh1285I CGRYCG 2 cut(s) 58, 62
BshFI GGCC 4 cut(s) 585, 745, 1052, 1073
BshNI GGYRCC 1 cut(s) 574
BshVI ATCGAT 2 cut(s) 54, 58
BsiEI CGRYCG 2 cut(s) 58, 62
BsiHKAI GWGCWC 3 cut(s) 534, 795, 1143
BsiSI CCGG 2 cut(s) 270, 492
BsmAI GTCTC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 947
BsnI GGCC 4 cut(s) 585, 745, 1052, 1073
Bsp119I TTCGAA 2 cut(s) 951, 1210
Bsp1286I GDGCHC 7 cut(s) 492, 534, 579, 697, 776, 795, 1143
Bsp13I TCCGGA 1 cut(s) 269
BspACI CCGC 2 cut(s) 626, 937
BspANI GGCC 4 cut(s) 585, 745, 1052, 1073
BspCNI CTCAG 2 cut(s) 583, 675
BspDI ATCGAT 2 cut(s) 54, 58
BspEI TCCGGA 1 cut(s) 269
BspLI GGNNCC 3 cut(s) 217, 274, 576
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 3 cut(s) 210, 223, 443
BspT104I TTCGAA 2 cut(s) 951, 1210
BspT107I GGYRCC 1 cut(s) 574
BsrI ACTGG 3 cut(s) 566, 784, 973
BssECI CCNNGG 2 cut(s) 708, 825
BssNAI GTATAC 1 cut(s) 1185
BssT1I CCWWGG 1 cut(s) 825
Bst1107I GTATAC 1 cut(s) 1185
Bst4CI ACNGT 5 cut(s) 151, 506, 820, 1004, 1189
BstBI TTCGAA 2 cut(s) 951, 1210
BstC8I GCNNGC 4 cut(s) 530, 626, 743, 1151
BstDEI CTNAG 5 cut(s) 344, 570, 615, 683, 796
BstEII GGTNACC 1 cut(s) 1195
BstF5I GGATG 4 cut(s) 266, 313, 746, 1120
BstMAI GTCTC 1 cut(s) 119
BstMCI CGRYCG 2 cut(s) 58, 62
BstMWI GCNNNNNNNGC 2 cut(s) 317, 630
BstNSI RCATGY 4 cut(s) 320, 464, 868, 997
BstPI GGTNACC 1 cut(s) 1195
BstSCI CCNGG 1 cut(s) 490
BstSFI CTRYAG 2 cut(s) 36, 147
BstSLI GKGCMC 5 cut(s) 492, 534, 579, 697, 776
BstV1I GCAGC 2 cut(s) 633, 1054
BstV2I GAAGAC 1 cut(s) 548
BstX2I RGATCY 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 1 cut(s) 215
BstZ17I GTATAC 1 cut(s) 1185
Bsu15I ATCGAT 2 cut(s) 54, 58
BsuI GTATCC 1 cut(s) 958
BsuRI GGCC 4 cut(s) 585, 745, 1052, 1073
BsuTUI ATCGAT 2 cut(s) 54, 58
BtsCI GGATG 4 cut(s) 266, 313, 746, 1120
BtsI GCAGTG 3 cut(s) 204, 635, 1042
BtsIMutI CAGTG 5 cut(s) 204, 559, 635, 750, 1042
Cac8I GCNNGC 4 cut(s) 530, 626, 743, 1151
Cfr13I GGNCC 3 cut(s) 272, 506, 934
ClaI ATCGAT 2 cut(s) 54, 58
CseI GACGC 2 cut(s) 100, 650
Csp6I GTAC 1 cut(s) 1167
CviQI GTAC 1 cut(s) 1167
DdeI CTNAG 5 cut(s) 344, 570, 615, 683, 796
DriI GACNNNNNGTC 1 cut(s) 820
EaeI YGGCCR 2 cut(s) 1050, 1071
Eam1105I GACNNNNNGTC 1 cut(s) 820
Ecl136II GAGCTC 2 cut(s) 793, 1141
Eco130I CCWWGG 1 cut(s) 825
Eco24I GRGCYC 2 cut(s) 795, 1143
Eco47I GGWCC 3 cut(s) 272, 506, 934
Eco53kI GAGCTC 2 cut(s) 793, 1141
Eco91I GGTNACC 1 cut(s) 1195
EcoICRI GAGCTC 2 cut(s) 793, 1141
EcoO65I GGTNACC 1 cut(s) 1195
EcoT14I CCWWGG 1 cut(s) 825
EcoT38I GRGCYC 2 cut(s) 795, 1143
ErhI CCWWGG 1 cut(s) 825
FauI CCCGC 1 cut(s) 633
FbaI TGATCA 2 cut(s) 766, 1018
FblI GTMKAC 1 cut(s) 1184
Fnu4HI GCNGC 2 cut(s) 622, 1043
FokI GGATG 4 cut(s) 253, 320, 733, 1127
FriOI GRGCYC 2 cut(s) 795, 1143
Fsp4HI GCNGC 2 cut(s) 622, 1043
FspBI CTAG 5 cut(s) 45, 129, 203, 327, 1173
GluI GCNGC 2 cut(s) 622, 1043
HaeIII GGCC 4 cut(s) 585, 745, 1052, 1073
HapII CCGG 2 cut(s) 270, 492
HgaI GACGC 2 cut(s) 100, 650
HinfI GANTC 3 cut(s) 1065, 1076, 1088
HpaII CCGG 2 cut(s) 270, 492
HphI GGTGA 2 cut(s) 100, 1189
Hpy166II GTNNAC 2 cut(s) 532, 1185
Hpy188I TCNGA 3 cut(s) 156, 663, 684
Hpy188III TCNNGA 4 cut(s) 270, 446, 452, 983
Hpy8I GTNNAC 2 cut(s) 532, 1185
HpyAV CCTTC 3 cut(s) 742, 868, 911
HpyCH4III ACNGT 5 cut(s) 151, 506, 820, 1004, 1189
HpyCH4V TGCA 5 cut(s) 38, 532, 655, 887, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 630
HpyF3I CTNAG 5 cut(s) 344, 570, 615, 683, 796
Kpn2I TCCGGA 1 cut(s) 269
Ksp22I TGATCA 2 cut(s) 766, 1018
Lsp1109I GCAGC 2 cut(s) 633, 1054
LweI GCATC 1 cut(s) 298
MaeI CTAG 5 cut(s) 45, 129, 203, 327, 1173
MaeIII GTNAC 6 cut(s) 47, 88, 334, 396, 906, 1195
MboII GAAGA 3 cut(s) 382, 537, 548
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 7 cut(s) 492, 534, 579, 697, 776, 795, 1143
MlsI TGGCCA 1 cut(s) 1052
MluCI AATT 4 cut(s) 853, 893, 898, 958
MluNI TGGCCA 1 cut(s) 1052
MlyI GAGTC 2 cut(s) 1074, 1085
MmeI TCCRAC 1 cut(s) 55
Mox20I TGGCCA 1 cut(s) 1052
MroI TCCGGA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 1052
MseI TTAA 3 cut(s) 809, 852, 1125
MslI CAYNNNNRTG 1 cut(s) 392
Msp20I TGGCCA 1 cut(s) 1052
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 2 cut(s) 270, 492
MspR9I CCNGG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 947
MwoI GCNNNNNNNGC 2 cut(s) 317, 630
NciI CCSGG 1 cut(s) 492
NlaIV GGNNCC 3 cut(s) 217, 274, 576
NmeAIII GCCGAG 2 cut(s) 733, 1099
NmuCI GTSAC 3 cut(s) 88, 396, 1195
NspI RCATGY 4 cut(s) 320, 464, 868, 997
NspV TTCGAA 2 cut(s) 951, 1210
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 1 cut(s) 947
PfeI GAWTC 1 cut(s) 1088
PkrI GCNGC 2 cut(s) 623, 1044
Ple19I CGATCG 2 cut(s) 58, 62
PleI GAGTC 2 cut(s) 1073, 1084
PpsI GAGTC 2 cut(s) 1073, 1084
PshBI ATTAAT 1 cut(s) 809
PsiI TTATAA 2 cut(s) 11, 836
Psp124BI GAGCTC 2 cut(s) 795, 1143
PspEI GGTNACC 1 cut(s) 1195
PspN4I GGNNCC 3 cut(s) 217, 274, 576
PspPI GGNCC 3 cut(s) 272, 506, 934
PstI CTGCAG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 215
PvuI CGATCG 2 cut(s) 58, 62
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 1 cut(s) 1168
RsaNI GTAC 1 cut(s) 1167
RseI CAYNNNNRTG 1 cut(s) 392
SacI GAGCTC 2 cut(s) 795, 1143
SaqAI TTAA 3 cut(s) 809, 852, 1125
SatI GCNGC 2 cut(s) 622, 1043
Sau96I GGNCC 3 cut(s) 272, 506, 934
ScaI AGTACT 1 cut(s) 1168
SchI GAGTC 2 cut(s) 1074, 1085
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 7 cut(s) 492, 534, 579, 697, 776, 795, 1143
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 2 cut(s) 36, 147
SfuI TTCGAA 2 cut(s) 951, 1210
SinI GGWCC 3 cut(s) 272, 506, 934
SmiMI CAYNNNNRTG 1 cut(s) 392
Sse9I AATT 4 cut(s) 853, 893, 898, 958
SsiI CCGC 2 cut(s) 626, 937
SspMI CTAG 5 cut(s) 45, 129, 203, 327, 1173
SstI GAGCTC 2 cut(s) 795, 1143
StyD4I CCNGG 1 cut(s) 490
StyI CCWWGG 1 cut(s) 825
TaaI ACNGT 5 cut(s) 151, 506, 820, 1004, 1189
TaqI TCGA 8 cut(s) 25, 54, 58, 789, 951, 984, 1086, 1210
TasI AATT 4 cut(s) 853, 893, 898, 958
TatI WGTACW 1 cut(s) 1166
TfiI GAWTC 1 cut(s) 1088
Tru1I TTAA 3 cut(s) 809, 852, 1125
Tru9I TTAA 3 cut(s) 809, 852, 1125
TscAI CASTG 5 cut(s) 204, 566, 635, 757, 1042
TseFI GTSAC 3 cut(s) 88, 396, 1195
TseI GCWGC 2 cut(s) 621, 1042
Tsp45I GTSAC 3 cut(s) 88, 396, 1195
TspDTI ATGAA 7 cut(s) 17, 122, 382, 530, 724, 870, 916
TspGWI ACGGA 3 cut(s) 129, 462, 664
TspRI CASTG 5 cut(s) 204, 566, 635, 757, 1042
VneI GTGCAC 1 cut(s) 530
VpaK11BI GGWCC 3 cut(s) 272, 506, 934
VspI ATTAAT 1 cut(s) 809
XapI RAATTY 1 cut(s) 898
XceI RCATGY 4 cut(s) 320, 464, 868, 997
XmiI GTMKAC 1 cut(s) 1184
XspI CTAG 5 cut(s) 45, 129, 203, 327, 1173
ZrmI AGTACT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.