Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Reverse (-)

61872594 .. 61874529

Gene Structure 1936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27079

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTGATTCCTAAGAATTTTTTGTTGAAGCAAACATATCCAAAACAACAAACAGTCATTTTTGTCGATGGAGCTTTAGGCTCTATTGAAGAAGAAAAAGTTGAATCGTTCCATGCTCCCTACTATGCTCCATGTCCGGACGAATTGAATTTGCAGTTACAAAAAGAAGGATCATTCGTAATGGACCGCCTTGAAGCATTCGAAATTGATTGGGATGGTGGTACTGATCTGGATAAAAACACGAAAAACACAACCAATGAAACCGTAGCAAGCAGTGGCGAGCGAGTAGCCAAGACCATAAGAGCCGTGGTGGAGTCAATGCTCGAGTCTCATTTTGGTGAAGATCTTACGATGGATACTTTGTTTCAGAGGTACGCAGAGCTCGTCAGCGATCGCTTGTCAAAATCTAGAACCAAGTACATCAACTTGGTCATTTCACTCATTAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

150

Amino Acids

17.06

Weight (kDa)

4.88

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	27 - 149	5.7e-30	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	16, 148
AfaI	GTAC	3 cut(s)	223, 374, 419
AgsI	TTSAA	5 cut(s)	28, 89, 104, 148, 194
AluBI	AGCT	2 cut(s)	74, 382
AluI	AGCT	2 cut(s)	74, 382
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	136
ApoI	RAATTY	2 cut(s)	16, 148
AsiSI	GCGATCGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	350
AsuII	TTCGAA	1 cut(s)	201
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	384
BccI	CCATC	3 cut(s)	62, 209, 346
BceAI	ACGGC	1 cut(s)	290
BciVI	GTATCC	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	1 cut(s)	408
BfuI	GTATCC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	184
Bpu14I	TTCGAA	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	136
BseAI	TCCGGA	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	220
Bsh1285I	CGRYCG	1 cut(s)	394
BsiEI	CGRYCG	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	170, 226, 343, 391
BspACI	CCGC	1 cut(s)	187
BspEI	TCCGGA	1 cut(s)	136
BspPI	GGATC	1 cut(s)	178
BspT104I	TTCGAA	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	4 cut(s)	170, 226, 343, 391
Bst4CI	ACNGT	2 cut(s)	55, 265
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	271, 281
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	4 cut(s)	173, 229, 346, 394
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	4 cut(s)	170, 226, 343, 391
BstMCI	CGRYCG	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	349
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	271, 281
Cfr13I	GGNCC	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	222, 373, 418
CviAII	CATG	2 cut(s)	113, 132
CviJI	RGCY	5 cut(s)	74, 81, 290, 305, 382
CviKI_1	RGCY	5 cut(s)	74, 81, 290, 305, 382
CviQI	GTAC	3 cut(s)	222, 373, 418
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	4 cut(s)	172, 228, 345, 393
DpnII	GATC	4 cut(s)	170, 226, 343, 391
Ecl136II	GAGCTC	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	2 cut(s)	116, 135
FaiI	YATR	5 cut(s)	37, 114, 126, 133, 299
FatI	CATG	2 cut(s)	112, 131
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	408
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	2 cut(s)	116, 135
HinfI	GANTC	4 cut(s)	7, 104, 314, 326
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	3 cut(s)	137, 230, 408
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	2 cut(s)	55, 265
HpyCH4V	TGCA	1 cut(s)	154
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	116, 135
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	170, 226, 343, 391
LmnI	GCTCC	3 cut(s)	71, 121, 133
LpnPI	CCDG	2 cut(s)	150, 215
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	4 cut(s)	172, 228, 345, 393
MboI	GATC	4 cut(s)	170, 226, 343, 391
MboII	GAAGA	3 cut(s)	101, 104, 353
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	4 cut(s)	16, 143, 148, 204
MlyI	GAGTC	2 cut(s)	323, 335
MnlI	CCTC	1 cut(s)	363
MroI	TCCGGA	1 cut(s)	136
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	197
NdeII	GATC	4 cut(s)	170, 226, 343, 391
NlaIII	CATG	2 cut(s)	116, 135
NspV	TTCGAA	1 cut(s)	201
PaeR7I	CTCGAG	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	7, 104
Ple19I	CGATCG	1 cut(s)	394
PleI	GAGTC	2 cut(s)	322, 334
PpsI	GAGTC	2 cut(s)	322, 334
Psp124BI	GAGCTC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	184
PspXI	VCTCGAGB	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	343
PvuI	CGATCG	1 cut(s)	394
RgaI	GCGATCGC	1 cut(s)	394
RsaI	GTAC	3 cut(s)	223, 374, 419
RsaNI	GTAC	3 cut(s)	222, 373, 418
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	444
Sau3AI	GATC	4 cut(s)	170, 226, 343, 391
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	2 cut(s)	323, 335
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	3 cut(s)	76, 374, 384
SfaAI	GCGATCGC	1 cut(s)	394
Sfr274I	CTCGAG	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	201
SgfI	GCGATCGC	1 cut(s)	394
SinI	GGWCC	1 cut(s)	184
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	16, 143, 148, 204
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	384
TaaI	ACNGT	2 cut(s)	55, 265
TaqI	TCGA	3 cut(s)	66, 201, 324
TasI	AATT	4 cut(s)	16, 143, 148, 204
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	2 cut(s)	7, 104
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	2 cut(s)	16, 148
XbaI	TCTAGA	1 cut(s)	407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.