Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Reverse (-)

61874561 .. 61875937

Gene Structure 1377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27080

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAAGTGAAGCAGATACTTCACATGAACAAAGGGGATGACGAAACTAGTTACGCCAAAAATTCCAAAATTCAGGAAACAGTACTGAAAATCTTGGGTTCAGATCTTGTGCCAAAACAAAGTTTTGGCATAGCAGATTTGGGTTGCTCCTCTGGACCAAACTCCTTGTTACTCATTTCAGAGGTCATGGATGTCATACATGCGGAATACAGTCGCCTGAGCCAGCCGAGCCTCCAGCTCCAGTCATCCACACGGGAGTTTAGAGTGTATCTCAATGACCTCTTTAGCAACGACTTCAACACCATTTTCGTGTCACTGCCAGAGTTCTACGACAAGTTCAAGCAAGACTTCAAGGATACTACTACTAGTGAGGGGCCTGATCTCTTTATTTCTGCTGTGCCTGGTTCTTTTTATGGTAGACTATTTCCCAACAAGAGCTTGCACTTTGTTCACTCTTCCTCTAGTCTTCATTGGCTCTCCCAGGTTCCCCCTGGACTAGATACAGCCTTGAACAAGGGGAAGATCTACATATCCAAGAGCAGCCCAGAATGTGTGAAGGAGGCATATTCACAGCAATTCCACAAGGACTTTTCTGTGTTTCTGAAGTCTCGCGCTGAAGAAATTGTATCCGGAGGACGAATGGTTCTGTCATTCATGGGAAGGCGATTGTCAGACCCCACAATTGAAGAGAGTTGCTATCTCCAGTGGGAGCTCTTAGCCAATGCATTAATGACCTTGGTTTTAGAGGTAACGTCATACTATCGTCATCAATATCCTCCACTCGAACCTGACATGTGTTCTGTATTGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

270

Amino Acids

30.58

Weight (kDa)

5.67

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	38 - 249	6.3e-84	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	418
AccII	CGCG	1 cut(s)	612
AccIII	TCCGGA	1 cut(s)	629
AciI	CCGC	1 cut(s)	203
AcsI	RAATTY	2 cut(s)	61, 69
AcuI	CTGAAG	2 cut(s)	623, 636
AfaI	GTAC	1 cut(s)	84
AflIII	ACRYGT	1 cut(s)	792
AgsI	TTSAA	5 cut(s)	298, 340, 352, 511, 686
AhlI	ACTAGT	2 cut(s)	47, 365
AjnI	CCWGG	3 cut(s)	400, 480, 490
AloI	GAACNNNNNNTCC	2 cut(s)	627, 659
AluBI	AGCT	3 cut(s)	238, 438, 712
AluI	AGCT	3 cut(s)	238, 438, 712
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	1 cut(s)	612
Aor13HI	TCCGGA	1 cut(s)	629
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	1 cut(s)	540
ApoI	RAATTY	2 cut(s)	61, 69
AseI	ATTAAT	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	2 cut(s)	155, 374
AvaII	GGWCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	714
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	1 cut(s)	552
BciT130I	CCWGG	3 cut(s)	402, 482, 492
BciVI	GTATCC	2 cut(s)	349, 637
BcoDI	GTCTC	1 cut(s)	612
BcuI	ACTAGT	2 cut(s)	47, 365
BfaI	CTAG	4 cut(s)	48, 366, 462, 497
BfuI	GTATCC	2 cut(s)	349, 637
BglII	AGATCT	2 cut(s)	103, 522
BisI	GCNGC	1 cut(s)	541
BlsI	GCNGC	1 cut(s)	542
BmcAI	AGTACT	1 cut(s)	84
Bme1390I	CCNGG	3 cut(s)	402, 482, 492
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	155, 374
BmiI	GGNNCC	2 cut(s)	375, 486
BmrFI	CCNGG	3 cut(s)	402, 482, 492
BpiI	GAAGAC	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	255, 287
BpmI	CTGGAG	3 cut(s)	218, 224, 686
Bpu10I	CCTNAGC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	480, 490, 735
BsaWI	WCCGGW	1 cut(s)	629
Bse1I	ACTGG	2 cut(s)	241, 703
BseAI	TCCGGA	1 cut(s)	629
BseBI	CCWGG	3 cut(s)	402, 482, 492
BseDI	CCNNGG	3 cut(s)	480, 490, 735
BseGI	GGATG	3 cut(s)	43, 196, 245
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	2 cut(s)	241, 703
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	612
BshFI	GGCC	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	1 cut(s)	630
BsmAI	GTCTC	1 cut(s)	612
BsnI	GGCC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp13I	TCCGGA	1 cut(s)	629
Bsp143I	GATC	3 cut(s)	103, 379, 522
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	376
BspCNI	CTCAG	1 cut(s)	210
BspEI	TCCGGA	1 cut(s)	629
BspFNI	CGCG	1 cut(s)	612
BspLI	GGNNCC	2 cut(s)	375, 486
BsrI	ACTGG	2 cut(s)	241, 703
BssECI	CCNNGG	3 cut(s)	480, 490, 735
BssMI	GATC	3 cut(s)	103, 379, 522
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	3 cut(s)	402, 482, 492
Bst4CI	ACNGT	2 cut(s)	82, 212
Bst6I	CTCTTC	2 cut(s)	460, 681
BstC8I	GCNNGC	2 cut(s)	224, 440
BstDEI	CTNAG	2 cut(s)	218, 715
BstF5I	GGATG	3 cut(s)	43, 196, 245
BstFNI	CGCG	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	3 cut(s)	106, 382, 525
BstMAI	GTCTC	1 cut(s)	612
BstMBI	GATC	3 cut(s)	103, 379, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNI	CCWGG	3 cut(s)	402, 482, 492
BstNSI	RCATGY	2 cut(s)	203, 796
BstSCI	CCNGG	3 cut(s)	400, 480, 490
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	552
BstV2I	GAAGAC	1 cut(s)	458
BstX2I	RGATCY	2 cut(s)	103, 522
BstYI	RGATCY	2 cut(s)	103, 522
BsuI	GTATCC	2 cut(s)	349, 637
BsuRI	GGCC	1 cut(s)	376
BtsCI	GGATG	3 cut(s)	43, 196, 245
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	2 cut(s)	314, 710
Cac8I	GCNNGC	2 cut(s)	224, 440
CfoI	GCGC	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	155, 374
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	5 cut(s)	25, 187, 200, 655, 793
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	218, 715
DpnI	GATC	3 cut(s)	105, 381, 524
DpnII	GATC	3 cut(s)	103, 379, 522
Eam1104I	CTCTTC	2 cut(s)	460, 681
EarI	CTCTTC	2 cut(s)	460, 681
Ecl136II	GAGCTC	1 cut(s)	712
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	714
Eco47I	GGWCC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	712
Eco57I	CTGAAG	2 cut(s)	623, 636
EcoICRI	GAGCTC	1 cut(s)	712
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRII	CCWGG	3 cut(s)	400, 480, 490
EcoT14I	CCWWGG	1 cut(s)	735
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	5 cut(s)	28, 190, 203, 658, 796
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	5 cut(s)	24, 186, 199, 654, 792
FblI	GTMKAC	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	541
FokI	GGATG	3 cut(s)	50, 203, 232
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	1 cut(s)	541
FspBI	CTAG	4 cut(s)	48, 366, 462, 497
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	1 cut(s)	541
GsuI	CTGGAG	3 cut(s)	218, 224, 686
HaeIII	GGCC	1 cut(s)	376
HapII	CCGG	1 cut(s)	630
HhaI	GCGC	1 cut(s)	614
Hin1II	CATG	5 cut(s)	28, 190, 203, 658, 796
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HpaII	CCGG	1 cut(s)	630
Hpy166II	GTNNAC	2 cut(s)	419, 451
Hpy188I	TCNGA	4 cut(s)	103, 181, 603, 673
Hpy188III	TCNNGA	3 cut(s)	74, 153, 630
Hpy8I	GTNNAC	2 cut(s)	419, 451
HpyAV	CCTTC	2 cut(s)	550, 654
HpyCH4III	ACNGT	2 cut(s)	82, 212
HpyCH4IV	ACGT	1 cut(s)	752
HpyCH4V	TGCA	2 cut(s)	442, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpyF3I	CTNAG	2 cut(s)	218, 715
HpySE526I	ACGT	1 cut(s)	752
Hsp92II	CATG	5 cut(s)	28, 190, 203, 658, 796
HspAI	GCGC	1 cut(s)	612
Kpn2I	TCCGGA	1 cut(s)	629
Kzo9I	GATC	3 cut(s)	103, 379, 522
LmnI	GCTCC	3 cut(s)	152, 243, 709
Lsp1109I	GCAGC	1 cut(s)	552
MaeI	CTAG	4 cut(s)	48, 366, 462, 497
MaeII	ACGT	1 cut(s)	752
MaeIII	GTNAC	4 cut(s)	50, 168, 312, 748
MalI	GATC	3 cut(s)	105, 381, 524
MboI	GATC	3 cut(s)	103, 379, 522
MboII	GAAGA	5 cut(s)	447, 458, 532, 629, 698
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	2 cut(s)	103, 522
MhlI	GDGCHC	1 cut(s)	714
MluCI	AATT	5 cut(s)	61, 69, 575, 621, 681
Mph1103I	ATGCAT	1 cut(s)	727
MroI	TCCGGA	1 cut(s)	629
MseI	TTAA	1 cut(s)	728
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	3 cut(s)	402, 482, 492
MunI	CAATTG	1 cut(s)	681
MvaI	CCWGG	3 cut(s)	402, 482, 492
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	1 cut(s)	228
NdeII	GATC	3 cut(s)	103, 379, 522
NlaIII	CATG	5 cut(s)	28, 190, 203, 658, 796
NlaIV	GGNNCC	2 cut(s)	375, 486
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	312
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	2 cut(s)	203, 796
PciI	ACATGT	1 cut(s)	792
PkrI	GCNGC	1 cut(s)	542
PscI	ACATGT	1 cut(s)	792
PshBI	ATTAAT	1 cut(s)	728
Psp124BI	GAGCTC	1 cut(s)	714
Psp6I	CCWGG	3 cut(s)	400, 480, 490
PspGI	CCWGG	3 cut(s)	400, 480, 490
PspN4I	GGNNCC	2 cut(s)	375, 486
PspPI	GGNCC	2 cut(s)	155, 374
PsuI	RGATCY	2 cut(s)	103, 522
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	714
SaqAI	TTAA	1 cut(s)	728
SatI	GCNGC	1 cut(s)	541
Sau3AI	GATC	3 cut(s)	103, 379, 522
Sau96I	GGNCC	2 cut(s)	155, 374
ScaI	AGTACT	1 cut(s)	84
ScrFI	CCNGG	3 cut(s)	402, 482, 492
SduI	GDGCHC	1 cut(s)	714
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	308
SpeI	ACTAGT	2 cut(s)	47, 365
Sse9I	AATT	5 cut(s)	61, 69, 575, 621, 681
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	4 cut(s)	48, 366, 462, 497
SstI	GAGCTC	1 cut(s)	714
StyD4I	CCNGG	3 cut(s)	400, 480, 490
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	2 cut(s)	82, 212
TaiI	ACGT	1 cut(s)	755
TaqI	TCGA	1 cut(s)	783
TasI	AATT	5 cut(s)	61, 69, 575, 621, 681
TatI	WGTACW	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	728
Tru9I	TTAA	1 cut(s)	728
TscAI	CASTG	2 cut(s)	321, 710
TseFI	GTSAC	1 cut(s)	312
TseI	GCWGC	1 cut(s)	540
Tsp45I	GTSAC	1 cut(s)	312
TspDTI	ATGAA	3 cut(s)	41, 458, 643
TspRI	CASTG	2 cut(s)	321, 710
VpaK11BI	GGWCC	1 cut(s)	155
VspI	ATTAAT	1 cut(s)	728
XapI	RAATTY	2 cut(s)	61, 69
XceI	RCATGY	2 cut(s)	203, 796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	418
XspI	CTAG	4 cut(s)	48, 366, 462, 497
ZrmI	AGTACT	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.