Rorug07G0216800

Jasmonate O-methyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001051
Physical Location & Seq
Forward (+)
19388908 .. 19390938
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0216800.1

Sequence Viewer

Length: 1377 bp
ATGAAAAGTCCTATCACCTTCTCCGATTGCCCTAACAAGCCAAACCAGCGCCAGACACCCGACCTGTGGGGAACCCCTTTTTGGTTCTCCAAGAAGAACAAGTTCACTTCAGTGAGTTGCGGGAGGATTGCATCGCTGAAGCAGCTTGCAATGAAGGCAATAGTATTATCAGCTGCCTGTTTGTCTATTTGCGACAGTTTAGATATCAATGAATGCGAGGATCCAAAACGCCCTAATATATGTGGTTCCGGCAATATTTGTTCCAATTCTGATGGGACCTTTGAATGCTACATGCCACGACCTCGGCCATTTCAGCCGCTTAAACTGGGCATTATAGTTATCTGCAGTGTTTTTGGACTGTTGCTTCATATCATTGGCGCATGGTGGTTACACAAAGTCATAAAGAAAAGGAAAAACATTAAGCTCAAGCAAAAGTTTTTTAGACTGAATGGTGGTTTTTTGTTGGAGCAACAGTTATCTTCTGGCGAAGTCAATGTTGAGAAGATTAAGTTGTTCAATGCAAAGGAGTTAGAGAAAGCCACAGACCGGTTTAATGTAGACAGAATTCTTGGTGAAGGAGGCCAAGGTACTGTTTATAAAGGAATGTTGACAGATGGAAGAATTGTTGCTGTCAAGAGGTCAAAAATAGAACATGGAGGAGAAGTGAGTCAATTCATTAATGAAATTGTCATTCTTTCACAAATTAACCACAGGAATGTGGTTAAAATCTTGGGCTGTTGTTTAGAGAGCGAAATTCCCCTTTTGGTCTATGAATTCCTACCCAATGGAACCCTTTCTCAATACATTCACAGTCGGGATGAGGATTTTCCTCTTACATGGGAAATGCGGTTACGAGTTGGTATGGAAGTTGCTGGAGCCCTTTCCTACTTACATACGTCTGCTTCAATGCCCATTTACCATCGCGACATTAAGTCTTCAAACATACTCTTGGATGATAAACATAGAGCAAAAGTTGCAGACTTTGGGACATCAAGATTTGTTTCCATTGACCAAACACATCTTACCATGACACATGTAAATGGAACATTTGGTTATTTAGACCCCGAGTACTTCCGGTCTAGCCAATTTACAGATAAGAGTGACGTTTATAGCTTCGGAGTAGTCCTTGCCGAGCTCTTGACTGGACAAAAACCAGTTTCTGTAACAACGTCACAGGAAGGGAGACAAGAGGGGAGAAGCCTAGCAACATATTTCATTGTTTCCCTGGAAAAGGATTGTTTGTTTGATATTCTTGATGCTGAAGTTATGAAGGGAGGTAAGAAAGAAGAGATAATGGCGGTTGCTAATCTTGCAAAACGTTGCTTGAATATGAAAGCTAGGAAAGAAGCGTCCTACTATGAAAGAAATAGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

458

Amino Acids

51.55

Weight (kDa)

8.88

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 184 - 407 5.3e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 186 - 393 3e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AccI GTMKAC 1 cut(s) 558
AccII CGCG 1 cut(s) 924
AciI CCGC 4 cut(s) 120, 317, 847, 1298
AclI AACGTT 1 cut(s) 1318
AclWI GGATC 2 cut(s) 215, 228
AcoI YGGCCR 1 cut(s) 305
AcsI RAATTY 3 cut(s) 564, 753, 773
AcuI CTGAAG 3 cut(s) 93, 158, 1281
AfaI GTAC 2 cut(s) 589, 1070
AfiI CCNNNNNNNGG 4 cut(s) 66, 81, 546, 1231
AflIII ACRYGT 1 cut(s) 1033
AgeI ACCGGT 1 cut(s) 546
AgsI TTSAA 5 cut(s) 284, 517, 906, 939, 1327
AhdI GACNNNNNGTC 1 cut(s) 931
AjnI CCWGG 1 cut(s) 1224
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 6 cut(s) 145, 173, 424, 1113, 1135, 1337
AluI AGCT 6 cut(s) 145, 173, 424, 1113, 1135, 1337
Alw21I GWGCWC 1 cut(s) 1137
Alw26I GTCTC 1 cut(s) 1177
AlwI GGATC 2 cut(s) 215, 228
AlwNI CAGNNNCTG 1 cut(s) 1160
Ama87I CYCGRG 1 cut(s) 1064
AoxI GGCC 2 cut(s) 305, 580
ApeKI GCWGC 2 cut(s) 142, 173
ApoI RAATTY 3 cut(s) 564, 753, 773
AseI ATTAAT 1 cut(s) 678
AsiGI ACCGGT 1 cut(s) 546
Asp700I GAANNNNTTC 2 cut(s) 101, 793
AspLEI GCGC 2 cut(s) 51, 380
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 7, 584
AvaI CYCGRG 1 cut(s) 1064
AvaII GGWCC 1 cut(s) 276
BamHI GGATCC 1 cut(s) 220
BanII GRGCYC 2 cut(s) 880, 1137
BbsI GAAGAC 1 cut(s) 927
Bbv12I GWGCWC 1 cut(s) 1137
BbvI GCAGC 2 cut(s) 154, 160
BccI CCATC 3 cut(s) 266, 608, 927
BciT130I CCWGG 1 cut(s) 1226
BcoDI GTCTC 1 cut(s) 1177
BfaI CTAG 3 cut(s) 1080, 1202, 1338
BfmI CTRYAG 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 52
BisI GCNGC 3 cut(s) 143, 174, 317
BlsI GCNGC 3 cut(s) 144, 175, 318
BmcAI AGTACT 1 cut(s) 1070
Bme1390I CCNGG 1 cut(s) 1226
Bme18I GGWCC 1 cut(s) 276
BmeRI GACNNNNNGTC 1 cut(s) 931
BmeT110I CYCGRG 1 cut(s) 1064
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 6 cut(s) 73, 222, 247, 277, 790, 877
BmrFI CCNGG 1 cut(s) 1226
BmrI ACTGGG 1 cut(s) 335
BmsI GCATC 2 cut(s) 140, 1246
BmuI ACTGGG 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 927
BpmI CTGGAG 1 cut(s) 894
BpuEI CTTGAG 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 302, 583, 1224
BsaWI WCCGGW 2 cut(s) 546, 1074
BsaXI ACNNNNNCTCC 4 cut(s) 458, 488, 648, 678
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 81, 546, 1231
Bse118I RCCGGY 1 cut(s) 546
Bse1I ACTGG 3 cut(s) 330, 1147, 1154
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 1226
BseDI CCNNGG 3 cut(s) 302, 583, 1224
BseGI GGATG 2 cut(s) 823, 958
BseLI CCNNNNNNNGG 4 cut(s) 66, 81, 546, 1231
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 3 cut(s) 330, 1147, 1154
BseRI GAGGAG 1 cut(s) 672
BseXI GCAGC 2 cut(s) 154, 160
Bsh1236I CGCG 1 cut(s) 924
BshFI GGCC 2 cut(s) 307, 582
BshTI ACCGGT 1 cut(s) 546
BsiHKAI GWGCWC 1 cut(s) 1137
BsiHKCI CYCGRG 1 cut(s) 1064
BsiSI CCGG 3 cut(s) 249, 547, 1075
BslFI GGGAC 2 cut(s) 289, 1000
BslI CCNNNNNNNGG 4 cut(s) 66, 81, 546, 1231
BsmAI GTCTC 1 cut(s) 1177
BsmFI GGGAC 2 cut(s) 289, 1000
BsmI GAATGC 2 cut(s) 218, 290
BsnI GGCC 2 cut(s) 307, 582
BsoBI CYCGRG 1 cut(s) 1064
Bsp1286I GDGCHC 2 cut(s) 880, 1137
Bsp143I GATC 1 cut(s) 220
Bsp68I TCGCGA 1 cut(s) 924
BspACI CCGC 4 cut(s) 120, 317, 847, 1298
BspANI GGCC 2 cut(s) 307, 582
BspFNI CGCG 1 cut(s) 924
BspLI GGNNCC 6 cut(s) 73, 222, 247, 277, 790, 877
BspMAI CTGCAG 1 cut(s) 347
BspPI GGATC 2 cut(s) 215, 228
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 546
BsrI ACTGG 3 cut(s) 330, 1147, 1154
BssAI RCCGGY 1 cut(s) 546
BssECI CCNNGG 3 cut(s) 302, 583, 1224
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 583
Bst2UI CCWGG 1 cut(s) 1226
Bst4CI ACNGT 5 cut(s) 197, 360, 474, 592, 812
Bst6I CTCTTC 1 cut(s) 1281
BstAPI GCANNNNNTGC 1 cut(s) 974
BstC8I GCNNGC 1 cut(s) 147
BstENI CCTNNNNNAGG 1 cut(s) 1229
BstF5I GGATG 2 cut(s) 823, 958
BstFNI CGCG 1 cut(s) 924
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 2 cut(s) 51, 380
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 1177
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 6 cut(s) 46, 142, 155, 313, 974, 1310
BstNI CCWGG 1 cut(s) 1226
BstNSI RCATGY 2 cut(s) 295, 1037
BstSCI CCNGG 1 cut(s) 1224
BstSFI CTRYAG 1 cut(s) 343
BstUI CGCG 1 cut(s) 924
BstV1I GCAGC 2 cut(s) 154, 160
BstV2I GAAGAC 1 cut(s) 927
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 2 cut(s) 307, 582
BtgZI GCGATG 2 cut(s) 117, 905
BtsCI GGATG 2 cut(s) 823, 958
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 117, 352
BtuMI TCGCGA 1 cut(s) 924
Cac8I GCNNGC 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 1160
CfoI GCGC 2 cut(s) 51, 380
Cfr10I RCCGGY 1 cut(s) 546
Cfr13I GGNCC 1 cut(s) 276
CseI GACGC 1 cut(s) 1338
Csp6I GTAC 2 cut(s) 588, 1069
CspAI ACCGGT 1 cut(s) 546
CviAII CATG 6 cut(s) 292, 381, 653, 837, 1027, 1034
CviQI GTAC 2 cut(s) 588, 1069
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
DriI GACNNNNNGTC 1 cut(s) 931
EaeI YGGCCR 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 1281
Eam1105I GACNNNNNGTC 1 cut(s) 931
EarI CTCTTC 1 cut(s) 1281
Ecl136II GAGCTC 1 cut(s) 1135
Eco130I CCWWGG 1 cut(s) 583
Eco24I GRGCYC 2 cut(s) 880, 1137
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 1135
Eco57I CTGAAG 3 cut(s) 93, 158, 1281
Eco88I CYCGRG 1 cut(s) 1064
EcoICRI GAGCTC 1 cut(s) 1135
EcoNI CCTNNNNNAGG 1 cut(s) 1229
EcoO109I RGGNCCY 1 cut(s) 276
EcoRI GAATTC 2 cut(s) 564, 773
EcoRII CCWGG 1 cut(s) 1224
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 583
EcoT38I GRGCYC 2 cut(s) 880, 1137
ErhI CCWWGG 1 cut(s) 583
FaeI CATG 6 cut(s) 295, 384, 656, 840, 1030, 1037
FaqI GGGAC 2 cut(s) 289, 1000
FatI CATG 6 cut(s) 291, 380, 652, 836, 1026, 1033
FauI CCCGC 1 cut(s) 113
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 3 cut(s) 143, 174, 317
FokI GGATG 2 cut(s) 830, 965
FriOI GRGCYC 2 cut(s) 880, 1137
Fsp4HI GCNGC 3 cut(s) 143, 174, 317
FspBI CTAG 3 cut(s) 1080, 1202, 1338
GlaI GCGC 2 cut(s) 50, 379
GluI GCNGC 3 cut(s) 143, 174, 317
GsuI CTGGAG 1 cut(s) 894
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 2 cut(s) 307, 582
HapII CCGG 3 cut(s) 249, 547, 1075
HgaI GACGC 1 cut(s) 1338
HhaI GCGC 2 cut(s) 51, 380
Hin1II CATG 6 cut(s) 295, 384, 656, 840, 1030, 1037
Hin6I GCGC 2 cut(s) 49, 378
HinP1I GCGC 2 cut(s) 49, 378
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HinfI GANTC 1 cut(s) 667
HpaII CCGG 3 cut(s) 249, 547, 1075
HphI GGTGA 2 cut(s) 7, 584
Hpy166II GTNNAC 3 cut(s) 105, 559, 609
Hpy188I TCNGA 3 cut(s) 25, 271, 1118
Hpy188III TCNNGA 6 cut(s) 634, 815, 923, 993, 1138, 1253
Hpy8I GTNNAC 3 cut(s) 105, 559, 609
HpyAV CCTTC 5 cut(s) 28, 148, 569, 1172, 1264
HpyCH4III ACNGT 5 cut(s) 197, 360, 474, 592, 812
HpyCH4IV ACGT 4 cut(s) 896, 1104, 1169, 1318
HpyCH4V TGCA 6 cut(s) 131, 149, 345, 521, 977, 1313
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 142, 155, 313, 974, 1310
HpySE526I ACGT 4 cut(s) 896, 1104, 1169, 1318
Hsp92II CATG 6 cut(s) 295, 384, 656, 840, 1030, 1037
HspAI GCGC 2 cut(s) 49, 378
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 2 cut(s) 466, 875
Lsp1109I GCAGC 2 cut(s) 154, 160
LweI GCATC 2 cut(s) 140, 1246
MaeI CTAG 3 cut(s) 1080, 1202, 1338
MaeII ACGT 4 cut(s) 896, 1104, 1169, 1318
MaeIII GTNAC 5 cut(s) 387, 849, 1100, 1162, 1170
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 6 cut(s) 106, 471, 514, 630, 927, 1298
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 880, 1137
MluCI AATT 9 cut(s) 265, 564, 621, 671, 684, 702, 753, 773, 1085
MlyI GAGTC 1 cut(s) 676
MmeI TCCRAC 1 cut(s) 444
MroXI GAANNNNTTC 2 cut(s) 101, 793
MseI TTAA 8 cut(s) 321, 420, 507, 552, 678, 705, 723, 930
MslI CAYNNNNRTG 3 cut(s) 110, 714, 1038
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 3 cut(s) 249, 547, 1075
MspR9I CCNGG 1 cut(s) 1226
Mva1269I GAATGC 2 cut(s) 218, 290
MvaI CCWGG 1 cut(s) 1226
MvnI CGCG 1 cut(s) 924
MwoI GCNNNNNNNGC 6 cut(s) 46, 142, 155, 313, 974, 1310
NdeII GATC 1 cut(s) 220
NlaIII CATG 6 cut(s) 295, 384, 656, 840, 1030, 1037
NlaIV GGNNCC 6 cut(s) 73, 222, 247, 277, 790, 877
NmeAIII GCCGAG 2 cut(s) 283, 1156
NmuCI GTSAC 2 cut(s) 1100, 1170
NruI TCGCGA 1 cut(s) 924
NspI RCATGY 2 cut(s) 295, 1037
OliI CACNNNNGTG 1 cut(s) 110
PciI ACATGT 1 cut(s) 1033
PctI GAATGC 2 cut(s) 218, 290
PdmI GAANNNNTTC 2 cut(s) 101, 793
PinAI ACCGGT 1 cut(s) 546
PkrI GCNGC 3 cut(s) 144, 175, 318
PleI GAGTC 1 cut(s) 675
PpsI GAGTC 1 cut(s) 675
PpuMI RGGWCCY 1 cut(s) 276
PscI ACATGT 1 cut(s) 1033
PshBI ATTAAT 1 cut(s) 678
PsiI TTATAA 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 1137
Psp1406I AACGTT 1 cut(s) 1318
Psp5II RGGWCCY 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 1224
PspGI CCWGG 1 cut(s) 1224
PspN4I GGNNCC 6 cut(s) 73, 222, 247, 277, 790, 877
PspPI GGNCC 1 cut(s) 276
PspPPI RGGWCCY 1 cut(s) 276
PstI CTGCAG 1 cut(s) 347
PstNI CAGNNNCTG 1 cut(s) 1160
PsuI RGATCY 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 173
RruI TCGCGA 1 cut(s) 924
RsaI GTAC 2 cut(s) 589, 1070
RsaNI GTAC 2 cut(s) 588, 1069
RseI CAYNNNNRTG 3 cut(s) 110, 714, 1038
SacI GAGCTC 1 cut(s) 1137
SaqAI TTAA 8 cut(s) 321, 420, 507, 552, 678, 705, 723, 930
SatI GCNGC 3 cut(s) 143, 174, 317
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 276
ScaI AGTACT 1 cut(s) 1070
SchI GAGTC 1 cut(s) 676
ScrFI CCNGG 1 cut(s) 1226
SduI GDGCHC 2 cut(s) 880, 1137
SfaNI GCATC 2 cut(s) 140, 1246
SfcI CTRYAG 1 cut(s) 343
SinI GGWCC 1 cut(s) 276
SmiMI CAYNNNNRTG 3 cut(s) 110, 714, 1038
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 9 cut(s) 265, 564, 621, 671, 684, 702, 753, 773, 1085
SsiI CCGC 4 cut(s) 120, 317, 847, 1298
SspI AATATT 1 cut(s) 256
SspMI CTAG 3 cut(s) 1080, 1202, 1338
SstI GAGCTC 1 cut(s) 1137
StyD4I CCNGG 1 cut(s) 1224
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 5 cut(s) 197, 360, 474, 592, 812
TaiI ACGT 4 cut(s) 899, 1107, 1172, 1321
TasI AATT 9 cut(s) 265, 564, 621, 671, 684, 702, 753, 773, 1085
TatI WGTACW 1 cut(s) 1068
TauI GCSGC 1 cut(s) 319
Tru1I TTAA 8 cut(s) 321, 420, 507, 552, 678, 705, 723, 930
Tru9I TTAA 8 cut(s) 321, 420, 507, 552, 678, 705, 723, 930
TscAI CASTG 2 cut(s) 117, 352
TseFI GTSAC 2 cut(s) 1100, 1170
TseI GCWGC 2 cut(s) 142, 173
Tsp45I GTSAC 2 cut(s) 1100, 1170
TspRI CASTG 2 cut(s) 117, 352
VpaK11BI GGWCC 1 cut(s) 276
VspI ATTAAT 1 cut(s) 678
XagI CCTNNNNNAGG 1 cut(s) 1229
XapI RAATTY 3 cut(s) 564, 753, 773
XceI RCATGY 2 cut(s) 295, 1037
XmiI GTMKAC 1 cut(s) 558
XmnI GAANNNNTTC 2 cut(s) 101, 793
XspI CTAG 3 cut(s) 1080, 1202, 1338
ZrmI AGTACT 1 cut(s) 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.