Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Forward (+)

1975480 .. 1978264

Gene Structure 2785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1027000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAGGTGCTGCAAATACTTCACATGAACAAAGGCAATGACGAGACTAGTTATGCTCAAAACTCTAAAGTTCAGAGAAAAATATTATCCGTCGTAAAGCCAATAATTGATGAAGCTGTACAAAAAATGTTGTGCTCAAATATAGCACCAATTGGGAGCATGGGAATAGCTGATTTGGGTTGCTCATCTGGACCAAACACCTTACTACTCATCTCCGAAATAATTGATGCCATACATGCCACAAGTAGCTGCTCAACATCATCCACAGAGTTTAGAGTGTTTCTAAACGACCTCTTTAGCAACGACTTCAACACCATTTTTATGTCACTCCCGGCATTCTACAACCAACTGAAGGAAGAAAAAGGTGCAGGATTCGGGTCTTTCTTTATCTCCGCCGTGCCAGGCTCGTTTTACGGCAGATTGTTTCCAGCCAAGAGTTTGCATTTCGTGCACTCTTCTTCTAGTCTTCATTGGCTCTCTCAAGTCCCTCCTGGCCTGGATTGCCAGGCAGCTGGCAAAGCATTGAACAAAGGAAAGATTTACATTTCTAAAACCAGCCCTCAATGCGTTTTGGAAGCATATTCACTTCAATTTCACAAGGACTTTTTGCTATTTCTCAAGTCCAGGGCTGAAGAAATAGTAGGTGGAGGACGAATGGTGTTCTCACTCATAGGCAGGTCGTCCTCTGACCCATCAACTCAAGAGAGTTGCTACCAATGGGAACTCCTAGCTCATGCATTAATGAGCATGGTTTCAGAGGGTCTCGTTGAAGAGGAAAAGGTTGATTCATTCAACGCTCCGTACTATGCCCCAAGTGAAGAGGAACTGAAATTTGAGTTAGGAAAAGAAGGATCATTTACAATAGACCGCCTTGAAGCCTTTGAAATTGATTGGGATGGTGGTGCAGAAATATCTGCCGTAGCTAGTGGGCAGCGAGTGGCCAAGACCGTAAGAGCTGTGGTTGAGTCGATGATCGAATCTCACTTCGGAAAAGATATCATGGACGATCTATTTCGTAGGTACTCTGAGCTCGTCGCCGATCACTCGTCAAAATCCAGAACCAAGCACATCAATTTGGTTGTTTCAGTCATTAGAAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

368

Amino Acids

40.5

Weight (kDa)

5.45

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	38 - 364	1.1e-130	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	666
AciI	CCGC	2 cut(s)	393, 868
AclWI	GGATC	1 cut(s)	859
AcoI	YGGCCR	1 cut(s)	939
AcsI	RAATTY	1 cut(s)	830
AcuI	CTGAAG	2 cut(s)	371, 651
AfaI	GTAC	3 cut(s)	120, 803, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	7 cut(s)	310, 526, 590, 770, 793, 875, 884
AhlI	ACTAGT	1 cut(s)	47
AjnI	CCWGG	5 cut(s)	400, 490, 495, 504, 623
AluBI	AGCT	8 cut(s)	116, 170, 249, 512, 731, 923, 956, 1030
AluI	AGCT	8 cut(s)	116, 170, 249, 512, 731, 923, 956, 1030
Alw21I	GWGCWC	3 cut(s)	137, 453, 1032
Alw26I	GTCTC	2 cut(s)	38, 767
Alw44I	GTGCAC	1 cut(s)	449
AlwI	GGATC	1 cut(s)	859
AoxI	GGCC	2 cut(s)	493, 939
ApaLI	GTGCAC	1 cut(s)	449
ApeKI	GCWGC	4 cut(s)	10, 249, 509, 931
ApoI	RAATTY	1 cut(s)	830
AseI	ATTAAT	1 cut(s)	740
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	941
BanII	GRGCYC	1 cut(s)	1032
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	3 cut(s)	137, 453, 1032
BbvI	GCAGC	3 cut(s)	236, 521, 943
BccI	CCATC	2 cut(s)	700, 890
BceAI	ACGGC	3 cut(s)	380, 430, 902
BciT130I	CCWGG	5 cut(s)	402, 492, 497, 506, 625
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	38, 767
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	4 cut(s)	48, 462, 728, 924
BfuAI	ACCTGC	1 cut(s)	666
BisI	GCNGC	4 cut(s)	11, 250, 510, 932
BlsI	GCNGC	4 cut(s)	12, 251, 511, 933
Bme1390I	CCNGG	6 cut(s)	332, 402, 492, 497, 506, 625
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmrFI	CCNGG	6 cut(s)	332, 402, 492, 497, 506, 625
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	458
BpuEI	CTTGAG	3 cut(s)	465, 602, 684
BpuMI	CCSGG	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	767
BsaJI	CCNNGG	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	43
BseBI	CCWGG	5 cut(s)	402, 492, 497, 506, 625
BseDI	CCNNGG	1 cut(s)	624
BseGI	GGATG	2 cut(s)	260, 901
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	1017
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	3 cut(s)	236, 521, 943
BsgI	GTGCAG	2 cut(s)	387, 924
BshFI	GGCC	2 cut(s)	495, 941
BsiHKAI	GWGCWC	3 cut(s)	137, 453, 1032
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	2 cut(s)	38, 767
BsmFI	GGGAC	1 cut(s)	470
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	495, 941
Bso31I	GGTCTC	1 cut(s)	767
Bsp1286I	GDGCHC	3 cut(s)	137, 453, 1032
Bsp1407I	TGTACA	1 cut(s)	118
Bsp143I	GATC	4 cut(s)	851, 972, 1006, 1039
BspACI	CCGC	2 cut(s)	393, 868
BspANI	GGCC	2 cut(s)	495, 941
BspCNI	CTCAG	1 cut(s)	1018
BspMI	ACCTGC	1 cut(s)	666
BspPI	GGATC	1 cut(s)	859
BspTNI	GGTCTC	1 cut(s)	767
BsrDI	GCAATG	1 cut(s)	43
BsrGI	TGTACA	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	4 cut(s)	851, 972, 1006, 1039
Bst2UI	CCWGG	5 cut(s)	402, 492, 497, 506, 625
Bst4CI	ACNGT	1 cut(s)	949
Bst6I	CTCTTC	3 cut(s)	460, 765, 813
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstAUI	TGTACA	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	1 cut(s)	1026
BstF5I	GGATG	2 cut(s)	260, 901
BstKTI	GATC	4 cut(s)	854, 975, 1009, 1042
BstMAI	GTCTC	2 cut(s)	38, 767
BstMBI	GATC	4 cut(s)	851, 972, 1006, 1039
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 448, 501, 518, 564
BstNI	CCWGG	5 cut(s)	402, 492, 497, 506, 625
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	6 cut(s)	330, 400, 490, 495, 504, 623
BstSLI	GKGCMC	1 cut(s)	453
BstV1I	GCAGC	3 cut(s)	236, 521, 943
BstV2I	GAAGAC	1 cut(s)	458
BstXI	CCANNNNNNTGG	1 cut(s)	512
BsuRI	GGCC	2 cut(s)	495, 941
BtsCI	GGATG	2 cut(s)	260, 901
BveI	ACCTGC	1 cut(s)	666
Cac8I	GCNNGC	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	119, 802, 1021
CviAII	CATG	6 cut(s)	25, 160, 236, 734, 748, 1000
CviQI	GTAC	3 cut(s)	119, 802, 1021
DdeI	CTNAG	1 cut(s)	1026
DpnI	GATC	4 cut(s)	853, 974, 1008, 1041
DpnII	GATC	4 cut(s)	851, 972, 1006, 1039
EaeI	YGGCCR	1 cut(s)	939
Eam1104I	CTCTTC	3 cut(s)	460, 765, 813
EarI	CTCTTC	3 cut(s)	460, 765, 813
EciI	GGCGGA	1 cut(s)	382
Ecl136II	GAGCTC	1 cut(s)	1030
Eco24I	GRGCYC	1 cut(s)	1032
Eco31I	GGTCTC	1 cut(s)	767
Eco32I	GATATC	1 cut(s)	997
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	1030
Eco57I	CTGAAG	2 cut(s)	371, 651
EcoICRI	GAGCTC	1 cut(s)	1030
EcoRII	CCWGG	5 cut(s)	400, 490, 495, 504, 623
EcoRV	GATATC	1 cut(s)	997
EcoT22I	ATGCAT	1 cut(s)	739
EcoT38I	GRGCYC	1 cut(s)	1032
FaeI	CATG	6 cut(s)	28, 163, 239, 737, 751, 1003
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	6 cut(s)	24, 159, 235, 733, 747, 999
Fnu4HI	GCNGC	4 cut(s)	11, 250, 510, 932
FokI	GGATG	2 cut(s)	247, 908
FriOI	GRGCYC	1 cut(s)	1032
Fsp4HI	GCNGC	4 cut(s)	11, 250, 510, 932
FspBI	CTAG	4 cut(s)	48, 462, 728, 924
GluI	GCNGC	4 cut(s)	11, 250, 510, 932
HaeIII	GGCC	2 cut(s)	495, 941
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	6 cut(s)	28, 163, 239, 737, 751, 1003
HinfI	GANTC	4 cut(s)	372, 785, 965, 977
HpaII	CCGG	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	6 cut(s)	75, 217, 688, 757, 989, 1027
Hpy188III	TCNNGA	3 cut(s)	189, 701, 1056
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	2 cut(s)	95, 1037
HpyAV	CCTTC	2 cut(s)	346, 842
HpyCH4III	ACNGT	1 cut(s)	949
HpyCH4V	TGCA	6 cut(s)	13, 368, 442, 451, 737, 905
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 448, 501, 518, 564
HpyF3I	CTNAG	1 cut(s)	1026
Hsp92II	CATG	6 cut(s)	28, 163, 239, 737, 751, 1003
Kzo9I	GATC	4 cut(s)	851, 972, 1006, 1039
LmnI	GCTCC	2 cut(s)	156, 802
Lsp1109I	GCAGC	3 cut(s)	236, 521, 943
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	4 cut(s)	48, 462, 728, 924
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	4 cut(s)	853, 974, 1008, 1041
MboI	GATC	4 cut(s)	851, 972, 1006, 1039
MboII	GAAGA	7 cut(s)	368, 447, 450, 458, 644, 782, 830
MfeI	CAATTG	1 cut(s)	150
MhlI	GDGCHC	3 cut(s)	137, 453, 1032
MlsI	TGGCCA	1 cut(s)	941
MluCI	AATT	7 cut(s)	105, 150, 222, 590, 830, 885, 1072
MluNI	TGGCCA	1 cut(s)	941
MlyI	GAGTC	1 cut(s)	974
MnlI	CCTC	8 cut(s)	302, 498, 570, 641, 694, 751, 766, 814
Mox20I	TGGCCA	1 cut(s)	941
Mph1103I	ATGCAT	1 cut(s)	739
MscI	TGGCCA	1 cut(s)	941
MseI	TTAA	1 cut(s)	740
MslI	CAYNNNNRTG	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	941
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	6 cut(s)	332, 402, 492, 497, 506, 625
MunI	CAATTG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	335
MvaI	CCWGG	5 cut(s)	402, 492, 497, 506, 625
MwoI	GCNNNNNNNGC	5 cut(s)	236, 448, 501, 518, 564
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	4 cut(s)	851, 972, 1006, 1039
NlaIII	CATG	6 cut(s)	28, 163, 239, 737, 751, 1003
NmuCI	GTSAC	1 cut(s)	324
NsiI	ATGCAT	1 cut(s)	739
NspI	RCATGY	1 cut(s)	239
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	372, 785, 977
PkrI	GCNGC	4 cut(s)	12, 251, 511, 933
PleI	GAGTC	1 cut(s)	973
PpsI	GAGTC	1 cut(s)	973
PshBI	ATTAAT	1 cut(s)	740
Psp124BI	GAGCTC	1 cut(s)	1032
Psp6I	CCWGG	5 cut(s)	400, 490, 495, 504, 623
PspGI	CCWGG	5 cut(s)	400, 490, 495, 504, 623
PspPI	GGNCC	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	3 cut(s)	120, 803, 1022
RsaNI	GTAC	3 cut(s)	119, 802, 1021
RseI	CAYNNNNRTG	1 cut(s)	320
SacI	GAGCTC	1 cut(s)	1032
SaqAI	TTAA	1 cut(s)	740
SatI	GCNGC	4 cut(s)	11, 250, 510, 932
Sau3AI	GATC	4 cut(s)	851, 972, 1006, 1039
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	974
ScrFI	CCNGG	6 cut(s)	332, 402, 492, 497, 506, 625
SduI	GDGCHC	3 cut(s)	137, 453, 1032
SfaNI	GCATC	1 cut(s)	217
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	3 cut(s)	480, 617, 699
SmoI	CTYRAG	3 cut(s)	480, 617, 699
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	7 cut(s)	105, 150, 222, 590, 830, 885, 1072
SsiI	CCGC	2 cut(s)	393, 868
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	4 cut(s)	48, 462, 728, 924
SstI	GAGCTC	1 cut(s)	1032
StyD4I	CCNGG	6 cut(s)	330, 400, 490, 495, 504, 623
TaaI	ACNGT	1 cut(s)	949
TaqI	TCGA	2 cut(s)	968, 975
TasI	AATT	7 cut(s)	105, 150, 222, 590, 830, 885, 1072
TatI	WGTACW	1 cut(s)	118
TfiI	GAWTC	3 cut(s)	372, 785, 977
Tru1I	TTAA	1 cut(s)	740
Tru9I	TTAA	1 cut(s)	740
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	4 cut(s)	10, 249, 509, 931
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	4 cut(s)	41, 126, 458, 777
TspGWI	ACGGA	2 cut(s)	79, 789
VneI	GTGCAC	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	191
VspI	ATTAAT	1 cut(s)	740
XapI	RAATTY	1 cut(s)	830
XceI	RCATGY	1 cut(s)	239
XspI	CTAG	4 cut(s)	48, 462, 728, 924
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.