Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Forward (+)

1985939 .. 1986466

Gene Structure 528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1027100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAGGTGCTGCAAATACTTCACATGAACCAAGGGAATGGCGAGACCAGTTATGCTCAAAACTCTACAGTTCAGGGAAAAATGTTATCCACCGCAAAGTCAATCATTGATGAAGCTATACAAAAAATGTTGTGCTTAACTATAGCACCAAATGGGAGCATGGGAATAGCCGATTTGGGTTGCTCATCTGGACCAAACACCTTACTACTCATCTCCGAAATAATTGATGCCATACATGCCACAAGTAGCAGCTCATCATCATCCATAGAGTTTAGAGTGTTTCTAAATGACCTCATTAGCAACGACTTCAACACCCTTTTTATGTCACTCCCGGCATTCTACAACCGACTAAAGGAAGAAAAAGGTGCTGGATTCGGGTCTGTATTTATCTCCGCCGTGCCGGGTGTTAGAGCTCGAGTGATTAGCTATGTTTCTATGGAAGTAAGGAATCTGAAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

154

Amino Acids

16.47

Weight (kDa)

5.62

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	38 - 135	3.4e-32	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	93, 393
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	310
AluBI	AGCT	4 cut(s)	116, 252, 413, 426
AluI	AGCT	4 cut(s)	116, 252, 413, 426
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	414
ApeKI	GCWGC	2 cut(s)	10, 249
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	2 cut(s)	332, 402
AvaI	CYCGRG	1 cut(s)	414
AvaII	GGWCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	380
BcnI	CCSGG	2 cut(s)	332, 402
BcoDI	GTCTC	1 cut(s)	38
BfmI	CTRYAG	2 cut(s)	66, 141
BisI	GCNGC	2 cut(s)	11, 250
BlsI	GCNGC	2 cut(s)	12, 251
Bme1390I	CCNGG	2 cut(s)	332, 402
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	191
BmrFI	CCNGG	2 cut(s)	332, 402
BmsI	GCATC	1 cut(s)	217
BpuMI	CCSGG	2 cut(s)	332, 402
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	332, 401
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	415
BspACI	CCGC	2 cut(s)	93, 393
BspTNI	GGTCTC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	260
BstMAI	GTCTC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	330, 400
BstSFI	CTRYAG	2 cut(s)	66, 141
BstV1I	GCAGC	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	191
CviAII	CATG	3 cut(s)	25, 160, 236
CviJI	RGCY	5 cut(s)	116, 170, 252, 413, 426
CviKI_1	RGCY	5 cut(s)	116, 170, 252, 413, 426
EciI	GGCGGA	1 cut(s)	382
Ecl136II	GAGCTC	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	415
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	3 cut(s)	28, 163, 239
FatI	CATG	3 cut(s)	24, 159, 235
Fnu4HI	GCNGC	2 cut(s)	11, 250
FokI	GGATG	1 cut(s)	247
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	2 cut(s)	11, 250
GluI	GCNGC	2 cut(s)	11, 250
HapII	CCGG	2 cut(s)	332, 401
Hin1II	CATG	3 cut(s)	28, 163, 239
HinfI	GANTC	2 cut(s)	372, 448
HpaII	CCGG	2 cut(s)	332, 401
Hpy188I	TCNGA	2 cut(s)	217, 453
Hpy188III	TCNNGA	1 cut(s)	189
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92II	CATG	3 cut(s)	28, 163, 239
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	6 cut(s)	59, 61, 174, 345, 354, 414
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	324
MboII	GAAGA	1 cut(s)	368
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	1 cut(s)	222
MnlI	CCTC	1 cut(s)	302
MseI	TTAA	1 cut(s)	137
MspI	CCGG	2 cut(s)	332, 401
MspR9I	CCNGG	2 cut(s)	332, 402
Mva1269I	GAATGC	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	2 cut(s)	332, 402
NlaIII	CATG	3 cut(s)	28, 163, 239
NmuCI	GTSAC	1 cut(s)	324
NspI	RCATGY	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	414
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	372, 448
PkrI	GCNGC	2 cut(s)	12, 251
Psp124BI	GAGCTC	1 cut(s)	415
PspPI	GGNCC	1 cut(s)	191
PspXI	VCTCGAGB	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	415
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	2 cut(s)	11, 250
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	332, 402
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	8 cut(s)	9, 118, 203, 254, 294, 367, 415, 428
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	2 cut(s)	66, 141
Sfr274I	CTCGAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	414
SmoI	CTYRAG	1 cut(s)	414
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	2 cut(s)	93, 393
SstI	GAGCTC	1 cut(s)	415
StyD4I	CCNGG	2 cut(s)	330, 400
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	415
TasI	AATT	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	372, 448
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	2 cut(s)	10, 249
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	2 cut(s)	41, 126
VpaK11BI	GGWCC	1 cut(s)	191
XceI	RCATGY	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.