Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Reverse (-)

61281854 .. 61284001

Gene Structure 2148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG419400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCAATGGAGAGTATGGGCATAGCGGATTTGGGTTGCTCATCTGGACCTAACACCTTGCTTCTCATATCGGAGATCATGGATGTCATACATGCCCAACTCAGCAGTGGCCAGCTGCATCCCTCGTCGTCGTCAATGGAGTTTAGAGTGTTTCTCAACGACCTATGCAGCAACGACTTCAACACCGTCTTCATGACACTTCCCGCATTCTACAACAAGCTGAGAGAAGACGATCGCTACAAGAGATTGTTTGGGGCTAACCCCAACCTCTTCATTTCCGCTGTGCCGGGCTCTTTCTACGGCAGATTGTTTGCCAGAAAAAGCCTGCACTTCGTGCACTCGTCCTCCAGTCTCCACTGGCTCTCTCAGGTTCCCCCGAGCCTGGACAGCAAGACCGGCACGCCCTTGAACAAGGGGAAGATCTACATTTCTAAGAGCAGTCCGCAATGCGTATTGGATGCGTACTCACTTCAATTCCACGAGGACTTTTTGATGTTTCTCAAGTCTCGGGCAGAAGAAATAGTTGGAGGAGGAAGAATGGTCTTGTCATTCATGGGCAGGCCAACACTTGACCCTACAACCGAACAGAGTTGCTACCATTGGGAACTCTTGGCCCTTGCATTGATGAGCATGGTTTCAGATGGTCTTGTGGAAGAGGAGAAAGTTGATTCCTTCAACGCTCCCTACTATGCCCCATGTGCAGAGGAACTGAAGTCGGTGTTGCAAAAGGACGAATCCTTCATAATGGACCGACTTGAAGCGTTCGAAATTGATTGGGACGGTGGTGGTGATGTTGTTGATGATCAAGCTAATATCGTTAATGGTTTTGATCATGATCAGATGGTGGCTATTAGTGGGAAGCGGGTGGCCAAAACCATAAGAGCGGTGGTAGAGTCAATGATCGAAGCTCATTTCGGGATAGAAATTATGGATGATCTGTTTCAGAGGTACACGGAGCTCGTCACCAATCACTTGTCAAACAGGAGAACCAAGTATATCAATTTGGTCATTTCACTGATAAGAAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

343

Amino Acids

38.59

Weight (kDa)

5.16

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	4 - 341	1.5e-123	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	884
AciI	CCGC	6 cut(s)	26, 204, 279, 443, 862, 884
AcoI	YGGCCR	2 cut(s)	109, 867
AcuI	CTGAAG	1 cut(s)	731
AdeI	CACNNNGTG	1 cut(s)	334
AfaI	GTAC	2 cut(s)	464, 950
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	5 cut(s)	181, 409, 473, 676, 758
AjnI	CCWGG	1 cut(s)	381
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	5 cut(s)	115, 220, 809, 908, 958
AluI	AGCT	5 cut(s)	115, 220, 809, 908, 958
Alw21I	GWGCWC	2 cut(s)	339, 960
Alw26I	GTCTC	2 cut(s)	356, 510
Alw44I	GTGCAC	1 cut(s)	335
Ama87I	CYCGRG	2 cut(s)	376, 507
AoxI	GGCC	4 cut(s)	109, 560, 612, 867
ApaLI	GTGCAC	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	115, 168
AspS9I	GGNCC	3 cut(s)	47, 613, 748
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	800, 955
AsuII	TTCGAA	1 cut(s)	765
AvaI	CYCGRG	2 cut(s)	376, 507
AvaII	GGWCC	2 cut(s)	47, 748
BaeGI	GKGCMC	1 cut(s)	339
BalI	TGGCCA	2 cut(s)	111, 869
BanII	GRGCYC	2 cut(s)	293, 960
BauI	CACGAG	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	181, 234
Bbv12I	GWGCWC	2 cut(s)	339, 960
BbvI	GCAGC	2 cut(s)	102, 180
BccI	CCATC	2 cut(s)	635, 835
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	383
BclI	TGATCA	3 cut(s)	802, 829, 835
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	356, 510
BglII	AGATCT	1 cut(s)	420
BisI	GCNGC	2 cut(s)	116, 169
BlsI	GCNGC	2 cut(s)	117, 170
Bme1390I	CCNGG	2 cut(s)	288, 383
Bme18I	GGWCC	2 cut(s)	47, 748
BmeT110I	CYCGRG	2 cut(s)	376, 507
BmgT120I	GGNCC	3 cut(s)	47, 613, 748
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	2 cut(s)	288, 383
BmsI	GCATC	2 cut(s)	127, 448
BpiI	GAAGAC	2 cut(s)	181, 234
BplI	GAGNNNNNCTC	2 cut(s)	138, 170
BpmI	CTGGAG	1 cut(s)	331
Bpu14I	TTCGAA	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	834
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	2 cut(s)	348, 362
Bse3DI	GCAATG	2 cut(s)	12, 452
Bse8I	GATNNNNATC	1 cut(s)	834
BseBI	CCWGG	1 cut(s)	383
BseGI	GGATG	4 cut(s)	88, 118, 463, 937
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	2 cut(s)	12, 452
BseMII	CTCAG	3 cut(s)	115, 212, 380
BseNI	ACTGG	2 cut(s)	348, 362
BseRI	GAGGAG	2 cut(s)	543, 671
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	102, 180
BsgI	GTGCAG	2 cut(s)	311, 720
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	4 cut(s)	111, 562, 614, 869
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	2 cut(s)	339, 960
BsiHKCI	CYCGRG	2 cut(s)	376, 507
BsiSI	CCGG	2 cut(s)	287, 396
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	356, 510
BsmFI	GGGAC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	4 cut(s)	111, 562, 614, 869
BsoBI	CYCGRG	2 cut(s)	376, 507
Bsp119I	TTCGAA	1 cut(s)	765
Bsp1286I	GDGCHC	3 cut(s)	293, 339, 960
Bsp143I	GATC	8 cut(s)	75, 232, 420, 802, 829, 835, 900, 934
BspACI	CCGC	6 cut(s)	26, 204, 279, 443, 862, 884
BspANI	GGCC	4 cut(s)	111, 562, 614, 869
BspCNI	CTCAG	3 cut(s)	114, 213, 379
BspHI	TCATGA	2 cut(s)	192, 832
BspLI	GGNNCC	1 cut(s)	372
BspT104I	TTCGAA	1 cut(s)	765
BsrBI	CCGCTC	1 cut(s)	884
BsrDI	GCAATG	2 cut(s)	12, 452
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	348, 362
BssAI	RCCGGY	1 cut(s)	395
BssMI	GATC	8 cut(s)	75, 232, 420, 802, 829, 835, 900, 934
BssSI	CACGAG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	187, 782
Bst6I	CTCTTC	2 cut(s)	275, 648
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	765
BstC8I	GCNNGC	4 cut(s)	113, 326, 401, 560
BstDEI	CTNAG	4 cut(s)	101, 221, 366, 432
BstF5I	GGATG	4 cut(s)	88, 118, 463, 937
BstKTI	GATC	8 cut(s)	78, 235, 423, 805, 832, 838, 903, 937
BstMAI	GTCTC	2 cut(s)	356, 510
BstMBI	GATC	8 cut(s)	75, 232, 420, 802, 829, 835, 900, 934
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	334, 387, 396, 698
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	286, 381
BstSLI	GKGCMC	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	102, 180
BstV2I	GAAGAC	2 cut(s)	181, 234
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
BsuRI	GGCC	4 cut(s)	111, 562, 614, 869
BtsCI	GGATG	4 cut(s)	88, 118, 463, 937
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	3 cut(s)	112, 355, 1013
Cac8I	GCNNGC	4 cut(s)	113, 326, 401, 560
CciI	TCATGA	2 cut(s)	192, 832
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	3 cut(s)	47, 613, 748
Csp6I	GTAC	2 cut(s)	463, 949
CviAII	CATG	7 cut(s)	79, 92, 193, 553, 631, 696, 833
CviQI	GTAC	2 cut(s)	463, 949
DdeI	CTNAG	4 cut(s)	101, 221, 366, 432
DpnI	GATC	8 cut(s)	77, 234, 422, 804, 831, 837, 902, 936
DpnII	GATC	8 cut(s)	75, 232, 420, 802, 829, 835, 900, 934
DraIII	CACNNNGTG	1 cut(s)	334
EaeI	YGGCCR	2 cut(s)	109, 867
Eam1104I	CTCTTC	2 cut(s)	275, 648
EarI	CTCTTC	2 cut(s)	275, 648
Ecl136II	GAGCTC	1 cut(s)	958
Eco24I	GRGCYC	2 cut(s)	293, 960
Eco47I	GGWCC	2 cut(s)	47, 748
Eco53kI	GAGCTC	1 cut(s)	958
Eco57I	CTGAAG	1 cut(s)	731
Eco88I	CYCGRG	2 cut(s)	376, 507
EcoICRI	GAGCTC	1 cut(s)	958
EcoRII	CCWGG	1 cut(s)	381
EcoT38I	GRGCYC	2 cut(s)	293, 960
FaeI	CATG	7 cut(s)	82, 95, 196, 556, 634, 699, 836
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	7 cut(s)	78, 91, 192, 552, 630, 695, 832
FauI	CCCGC	2 cut(s)	211, 855
FbaI	TGATCA	3 cut(s)	802, 829, 835
Fnu4HI	GCNGC	2 cut(s)	116, 169
FokI	GGATG	4 cut(s)	95, 105, 470, 944
FriOI	GRGCYC	2 cut(s)	293, 960
Fsp4HI	GCNGC	2 cut(s)	116, 169
GluI	GCNGC	2 cut(s)	116, 169
GsuI	CTGGAG	1 cut(s)	331
HaeIII	GGCC	4 cut(s)	111, 562, 614, 869
HapII	CCGG	2 cut(s)	287, 396
Hin1II	CATG	7 cut(s)	82, 95, 196, 556, 634, 699, 836
HinfI	GANTC	3 cut(s)	668, 734, 893
HpaII	CCGG	2 cut(s)	287, 396
HphI	GGTGA	2 cut(s)	800, 955
Hpy166II	GTNNAC	2 cut(s)	337, 951
Hpy188I	TCNGA	4 cut(s)	73, 640, 840, 945
Hpy188III	TCNNGA	4 cut(s)	45, 193, 833, 916
Hpy8I	GTNNAC	2 cut(s)	337, 951
Hpy99I	CGWCG	2 cut(s)	130, 133
HpyAV	CCTTC	3 cut(s)	682, 748, 1017
HpyCH4III	ACNGT	2 cut(s)	187, 782
HpyCH4V	TGCA	7 cut(s)	118, 168, 328, 337, 620, 701, 724
HpyF10VI	GCNNNNNNNGC	4 cut(s)	334, 387, 396, 698
HpyF3I	CTNAG	4 cut(s)	101, 221, 366, 432
Hsp92II	CATG	7 cut(s)	82, 95, 196, 556, 634, 699, 836
Ksp22I	TGATCA	3 cut(s)	802, 829, 835
Kzo9I	GATC	8 cut(s)	75, 232, 420, 802, 829, 835, 900, 934
LmnI	GCTCC	2 cut(s)	685, 955
Lsp1109I	GCAGC	2 cut(s)	102, 180
LweI	GCATC	2 cut(s)	127, 448
MaeIII	GTNAC	1 cut(s)	961
MalI	GATC	8 cut(s)	77, 234, 422, 804, 831, 837, 902, 936
MbiI	CCGCTC	1 cut(s)	884
MboI	GATC	8 cut(s)	75, 232, 420, 802, 829, 835, 900, 934
MboII	GAAGA	7 cut(s)	181, 239, 262, 430, 527, 546, 665
MflI	RGATCY	1 cut(s)	420
MhlI	GDGCHC	3 cut(s)	293, 339, 960
MlsI	TGGCCA	2 cut(s)	111, 869
MluCI	AATT	4 cut(s)	473, 768, 924, 1000
MluNI	TGGCCA	2 cut(s)	111, 869
MlyI	GAGTC	1 cut(s)	902
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	9 cut(s)	133, 278, 355, 475, 521, 524, 649, 697, 939
Mox20I	TGGCCA	2 cut(s)	111, 869
MscI	TGGCCA	2 cut(s)	111, 869
MseI	TTAA	1 cut(s)	819
Msp20I	TGGCCA	2 cut(s)	111, 869
MspA1I	CMGCKG	2 cut(s)	115, 281
MspI	CCGG	2 cut(s)	287, 396
MspR9I	CCNGG	2 cut(s)	288, 383
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	4 cut(s)	334, 387, 396, 698
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	8 cut(s)	75, 232, 420, 802, 829, 835, 900, 934
NlaIII	CATG	7 cut(s)	82, 95, 196, 556, 634, 699, 836
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	961
NspI	RCATGY	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	765
PagI	TCATGA	2 cut(s)	192, 832
PctI	GAATGC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	668, 734
PkrI	GCNGC	2 cut(s)	117, 170
Ple19I	CGATCG	1 cut(s)	235
PleI	GAGTC	1 cut(s)	901
PpsI	GAGTC	1 cut(s)	901
Psp124BI	GAGCTC	1 cut(s)	960
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	3 cut(s)	47, 613, 748
PsuI	RGATCY	1 cut(s)	420
PvuI	CGATCG	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	2 cut(s)	464, 950
RsaNI	GTAC	2 cut(s)	463, 949
SacI	GAGCTC	1 cut(s)	960
SaqAI	TTAA	1 cut(s)	819
SatI	GCNGC	2 cut(s)	116, 169
Sau3AI	GATC	8 cut(s)	75, 232, 420, 802, 829, 835, 900, 934
Sau96I	GGNCC	3 cut(s)	47, 613, 748
SchI	GAGTC	1 cut(s)	902
ScrFI	CCNGG	2 cut(s)	288, 383
SduI	GDGCHC	3 cut(s)	293, 339, 960
SfaNI	GCATC	2 cut(s)	127, 448
SfuI	TTCGAA	1 cut(s)	765
SinI	GGWCC	2 cut(s)	47, 748
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	4 cut(s)	473, 768, 924, 1000
SsiI	CCGC	6 cut(s)	26, 204, 279, 443, 862, 884
SstI	GAGCTC	1 cut(s)	960
StyD4I	CCNGG	2 cut(s)	286, 381
TaaI	ACNGT	2 cut(s)	187, 782
TaqI	TCGA	2 cut(s)	765, 903
TaqII	GACCGA	1 cut(s)	765
TasI	AATT	4 cut(s)	473, 768, 924, 1000
TfiI	GAWTC	2 cut(s)	668, 734
Tru1I	TTAA	1 cut(s)	819
Tru9I	TTAA	1 cut(s)	819
TscAI	CASTG	3 cut(s)	112, 362, 1020
TseFI	GTSAC	1 cut(s)	961
TseI	GCWGC	2 cut(s)	115, 168
Tsp45I	GTSAC	1 cut(s)	961
TspDTI	ATGAA	4 cut(s)	181, 262, 541, 730
TspGWI	ACGGA	1 cut(s)	968
TspRI	CASTG	3 cut(s)	112, 362, 1020
VneI	GTGCAC	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	47, 748
XceI	RCATGY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	2 cut(s)	104, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.