FvH4_2g39450

Jasmonate

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
28342699 .. 28345698
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39450.t1

Sequence Viewer

Length: 1158 bp
ATGGAAGTGGAGCAAATACTTCATATGAACAAAGGGGATGATGAAACTAGCTACGCCAAAAATTCCAAAATTCAGTGCAAAATACTATCTATCACAAAGCCAATCATCGAGGAAACAGTACTGAAAATCTTAGCTCATATGCCAAAAAGTTTCGGCGTAGCAGATTTGGGTTGCTCATCTGGACCAAACTCCTTGCTACTCGTTTCAGAGGTCATGGATGTCATACATGCCGAATACAGTCGCCTGAGCGAGCCGAGCCTCCAGTTCCAGTCATCAACACTGGAGTTTAGAGTGTTTCTCAATGACCTCTTCAGCAACGATTTCAACACCATTTTCATGTCACTGCCCGAGTTCTACGACAAGTTCAAGCAAGACTTCAAGAATTCTATTACTAGTGATGAGGGGCGCCCTAACCTCTTTATTTCTGCTGTGCCTGGTTCTTTTTATGGTAGACTATTTCCCACCAAGAGCTTGCACTTTGCTCACTCTTCCTCTAGTCTTCACTGGCTCTCCCAGGTTCCCCCTGGATTAGACACAGCCTTGAACAAGGGGAAGATCTACATATCTAAGAGCAGCCCAGTATGTGTATTTGAGGCATATTCACAGCAATTCCAGAAGGACTTTTCTGTGTTTCTGAAGTCTCGCGCTGAAGAAATCGTATCGGGAGGACGAATGGTCCTGTCATTCATGGGAAGGCGATGCTCAGACCCTACAACCGAAGAGAGTTGCTATCTACAGTGGGAGCTGTTAGCTCAAGCATTGATGACCTTCGTTTTAGAGGGCTCTATTGAAGAAGAAAAAGTTGAGTCATTCCATGCTCCCTACTATGCTCCATGTCCGGAGGAACTGAATTTGGTGGTACAAAAAGAAGGGTCATTTGTAGCCGACCGCCTTGAAGCATTCGAAATCGATTGGGATGGTGGTGCTGATCTTGATGAAAACACTGATAACATAACCAAAGAGACCATAGCAATAAGCAGCGGCGAGCGAGTAGCGAAGACGATAAGAGCCGTGGTGGAGTCGATGCTCGAGTCTCATTTTGGAGAAGATCTTATGATGGATGCCTTGTTTCAGAGGTACGCAGAGCTCGTCAGTGATCGCTTATCAAAGTCTAGAAACAAGTACATCAACTTGGTCATTTCACTGATTAAGAACTAG

Protein Analysis

386

Amino Acids

43.42

Weight (kDa)

4.94

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 43 - 384 5.7e-122 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 405
AccI GTMKAC 1 cut(s) 451
AccII CGCG 1 cut(s) 645
AccIII TCCGGA 1 cut(s) 838
AciI CCGC 2 cut(s) 889, 981
AcsI RAATTY 4 cut(s) 61, 69, 382, 850
AcuI CTGAAG 3 cut(s) 295, 656, 669
AcyI GRCGYC 1 cut(s) 406
AfaI GTAC 4 cut(s) 120, 861, 1079, 1124
AgsI TTSAA 6 cut(s) 325, 367, 379, 544, 791, 896
AhdI GACNNNNNGTC 1 cut(s) 674
AhlI ACTAGT 1 cut(s) 392
AjnI CCWGG 3 cut(s) 433, 513, 523
AluBI AGCT 6 cut(s) 51, 134, 471, 745, 752, 1087
AluI AGCT 6 cut(s) 51, 134, 471, 745, 752, 1087
Alw21I GWGCWC 1 cut(s) 1089
Alw26I GTCTC 3 cut(s) 645, 956, 1038
Ama87I CYCGRG 2 cut(s) 347, 1028
Aor13HI TCCGGA 1 cut(s) 838
ApeKI GCWGC 2 cut(s) 573, 978
ApoI RAATTY 4 cut(s) 61, 69, 382, 850
AspLEI GCGC 2 cut(s) 408, 647
AspS9I GGNCC 2 cut(s) 182, 676
AsuII TTCGAA 1 cut(s) 903
AvaI CYCGRG 2 cut(s) 347, 1028
AvaII GGWCC 2 cut(s) 182, 676
BanI GGYRCC 1 cut(s) 405
BanII GRGCYC 2 cut(s) 785, 1089
BbsI GAAGAC 2 cut(s) 491, 1004
Bbv12I GWGCWC 1 cut(s) 1089
BbvI GCAGC 2 cut(s) 585, 990
BccI CCATC 2 cut(s) 911, 1051
BceAI ACGGC 1 cut(s) 995
BciT130I CCWGG 3 cut(s) 435, 515, 525
BcoDI GTCTC 3 cut(s) 645, 956, 1038
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 5 cut(s) 48, 393, 495, 1113, 1156
BfmI CTRYAG 1 cut(s) 734
BfoI RGCGCY 1 cut(s) 409
BglII AGATCT 2 cut(s) 555, 1048
BisI GCNGC 3 cut(s) 574, 979, 982
BlsI GCNGC 3 cut(s) 575, 980, 983
BmcAI AGTACT 1 cut(s) 120
Bme1390I CCNGG 3 cut(s) 435, 515, 525
Bme18I GGWCC 2 cut(s) 182, 676
BmeRI GACNNNNNGTC 1 cut(s) 674
BmeT110I CYCGRG 2 cut(s) 347, 1028
BmgT120I GGNCC 2 cut(s) 182, 676
BmiI GGNNCC 2 cut(s) 407, 519
BmrFI CCNGG 3 cut(s) 435, 515, 525
BmrI ACTGGG 1 cut(s) 572
BmsI GCATC 3 cut(s) 689, 1014, 1051
BmuI ACTGGG 1 cut(s) 572
BpiI GAAGAC 2 cut(s) 491, 1004
BplI GAGNNNNNCTC 2 cut(s) 282, 314
BpmI CTGGAG 2 cut(s) 245, 302
Bpu10I CCTNAGC 1 cut(s) 245
Bpu14I TTCGAA 1 cut(s) 903
BpuEI CTTGAG 1 cut(s) 738
Bsa29I ATCGAT 1 cut(s) 909
BsaHI GRCGYC 1 cut(s) 406
BsaI GGTCTC 1 cut(s) 956
BsaJI CCNNGG 3 cut(s) 513, 523, 1011
BsaWI WCCGGW 1 cut(s) 838
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bse1I ACTGG 5 cut(s) 262, 268, 285, 509, 578
BseAI TCCGGA 1 cut(s) 838
BseBI CCWGG 3 cut(s) 435, 515, 525
BseCI ATCGAT 1 cut(s) 909
BseDI CCNNGG 3 cut(s) 513, 523, 1011
BseGI GGATG 4 cut(s) 43, 223, 922, 1066
BseMII CTCAG 2 cut(s) 236, 717
BseNI ACTGG 5 cut(s) 262, 268, 285, 509, 578
BseXI GCAGC 2 cut(s) 585, 990
Bsh1236I CGCG 1 cut(s) 645
Bsh1285I CGRYCG 1 cut(s) 889
BshNI GGYRCC 1 cut(s) 405
BshVI ATCGAT 1 cut(s) 909
BsiEI CGRYCG 1 cut(s) 889
BsiHKAI GWGCWC 1 cut(s) 1089
BsiHKCI CYCGRG 2 cut(s) 347, 1028
BsiSI CCGG 1 cut(s) 839
BsmAI GTCTC 3 cut(s) 645, 956, 1038
BsmI GAATGC 1 cut(s) 899
Bso31I GGTCTC 1 cut(s) 956
BsoBI CYCGRG 2 cut(s) 347, 1028
Bsp119I TTCGAA 1 cut(s) 903
Bsp1286I GDGCHC 2 cut(s) 785, 1089
Bsp13I TCCGGA 1 cut(s) 838
Bsp143I GATC 4 cut(s) 555, 928, 1048, 1096
BspACI CCGC 2 cut(s) 889, 981
BspCNI CTCAG 2 cut(s) 237, 716
BspDI ATCGAT 1 cut(s) 909
BspEI TCCGGA 1 cut(s) 838
BspFNI CGCG 1 cut(s) 645
BspLI GGNNCC 2 cut(s) 407, 519
BspT104I TTCGAA 1 cut(s) 903
BspT107I GGYRCC 1 cut(s) 405
BspTNI GGTCTC 1 cut(s) 956
BsrI ACTGG 5 cut(s) 262, 268, 285, 509, 578
BssECI CCNNGG 3 cut(s) 513, 523, 1011
BssMI GATC 4 cut(s) 555, 928, 1048, 1096
BssNI GRCGYC 1 cut(s) 406
Bst2UI CCWGG 3 cut(s) 435, 515, 525
Bst4CI ACNGT 3 cut(s) 118, 239, 738
Bst6I CTCTTC 3 cut(s) 314, 493, 714
BstACI GRCGYC 1 cut(s) 406
BstBI TTCGAA 1 cut(s) 903
BstC8I GCNNGC 3 cut(s) 251, 473, 986
BstDEI CTNAG 4 cut(s) 130, 245, 567, 703
BstDSI CCRYGG 1 cut(s) 1011
BstF5I GGATG 4 cut(s) 43, 223, 922, 1066
BstFNI CGCG 1 cut(s) 645
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 2 cut(s) 408, 647
BstKTI GATC 4 cut(s) 558, 931, 1051, 1099
BstMAI GTCTC 3 cut(s) 645, 956, 1038
BstMBI GATC 4 cut(s) 555, 928, 1048, 1096
BstMCI CGRYCG 1 cut(s) 889
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNI CCWGG 3 cut(s) 435, 515, 525
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 3 cut(s) 433, 513, 523
BstSFI CTRYAG 1 cut(s) 734
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 2 cut(s) 585, 990
BstV2I GAAGAC 2 cut(s) 491, 1004
BstX2I RGATCY 2 cut(s) 555, 1048
BstYI RGATCY 2 cut(s) 555, 1048
Bsu15I ATCGAT 1 cut(s) 909
BsuTUI ATCGAT 1 cut(s) 909
BtgI CCRYGG 1 cut(s) 1011
BtgZI GCGATG 1 cut(s) 712
BtsCI GGATG 4 cut(s) 43, 223, 922, 1066
BtsI GCAGTG 1 cut(s) 341
BtsIMutI CAGTG 8 cut(s) 80, 278, 341, 502, 743, 942, 1099, 1142
Cac8I GCNNGC 3 cut(s) 251, 473, 986
CfoI GCGC 2 cut(s) 408, 647
Cfr13I GGNCC 2 cut(s) 182, 676
ClaI ATCGAT 1 cut(s) 909
Csp6I GTAC 4 cut(s) 119, 860, 1078, 1123
CviAII CATG 6 cut(s) 214, 227, 337, 688, 815, 834
CviQI GTAC 4 cut(s) 119, 860, 1078, 1123
DdeI CTNAG 4 cut(s) 130, 245, 567, 703
DinI GGCGCC 1 cut(s) 407
DpnI GATC 4 cut(s) 557, 930, 1050, 1098
DpnII GATC 4 cut(s) 555, 928, 1048, 1096
DriI GACNNNNNGTC 1 cut(s) 674
Eam1104I CTCTTC 3 cut(s) 314, 493, 714
Eam1105I GACNNNNNGTC 1 cut(s) 674
EarI CTCTTC 3 cut(s) 314, 493, 714
Ecl136II GAGCTC 1 cut(s) 1087
Eco24I GRGCYC 2 cut(s) 785, 1089
Eco31I GGTCTC 1 cut(s) 956
Eco47I GGWCC 2 cut(s) 182, 676
Eco53kI GAGCTC 1 cut(s) 1087
Eco57I CTGAAG 3 cut(s) 295, 656, 669
Eco88I CYCGRG 2 cut(s) 347, 1028
EcoICRI GAGCTC 1 cut(s) 1087
EcoRI GAATTC 1 cut(s) 382
EcoRII CCWGG 3 cut(s) 433, 513, 523
EcoT38I GRGCYC 2 cut(s) 785, 1089
EgeI GGCGCC 1 cut(s) 407
EheI GGCGCC 1 cut(s) 407
FaeI CATG 6 cut(s) 217, 230, 340, 691, 818, 837
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FatI CATG 6 cut(s) 213, 226, 336, 687, 814, 833
FauNDI CATATG 2 cut(s) 24, 138
FblI GTMKAC 1 cut(s) 451
Fnu4HI GCNGC 3 cut(s) 574, 979, 982
FokI GGATG 4 cut(s) 50, 230, 929, 1073
FriOI GRGCYC 2 cut(s) 785, 1089
Fsp4HI GCNGC 3 cut(s) 574, 979, 982
FspBI CTAG 5 cut(s) 48, 393, 495, 1113, 1156
GlaI GCGC 2 cut(s) 407, 646
GluI GCNGC 3 cut(s) 574, 979, 982
GsuI CTGGAG 2 cut(s) 245, 302
HaeII RGCGCY 1 cut(s) 409
HapII CCGG 1 cut(s) 839
HhaI GCGC 2 cut(s) 408, 647
Hin1I GRCGYC 1 cut(s) 406
Hin1II CATG 6 cut(s) 217, 230, 340, 691, 818, 837
Hin6I GCGC 2 cut(s) 406, 645
HinP1I GCGC 2 cut(s) 406, 645
HinfI GANTC 3 cut(s) 806, 1019, 1031
HpaII CCGG 1 cut(s) 839
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 4 cut(s) 208, 636, 706, 1074
Hpy188III TCNNGA 7 cut(s) 180, 379, 613, 663, 839, 932, 1113
Hpy8I GTNNAC 1 cut(s) 452
HpyAV CCTTC 4 cut(s) 610, 687, 778, 863
HpyCH4III ACNGT 3 cut(s) 118, 239, 738
HpyCH4V TGCA 2 cut(s) 78, 475
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 4 cut(s) 130, 245, 567, 703
Hsp92I GRCGYC 1 cut(s) 406
Hsp92II CATG 6 cut(s) 217, 230, 340, 691, 818, 837
HspAI GCGC 2 cut(s) 406, 645
KasI GGCGCC 1 cut(s) 405
Kpn2I TCCGGA 1 cut(s) 838
Kzo9I GATC 4 cut(s) 555, 928, 1048, 1096
LmnI GCTCC 4 cut(s) 10, 742, 823, 835
Lsp1109I GCAGC 2 cut(s) 585, 990
LweI GCATC 3 cut(s) 689, 1014, 1051
MaeI CTAG 5 cut(s) 48, 393, 495, 1113, 1156
MaeIII GTNAC 1 cut(s) 339
MalI GATC 4 cut(s) 557, 930, 1050, 1098
MboI GATC 4 cut(s) 555, 928, 1048, 1096
MflI RGATCY 2 cut(s) 555, 1048
MhlI GDGCHC 2 cut(s) 785, 1089
MluCI AATT 5 cut(s) 61, 69, 382, 608, 850
Mly113I GGCGCC 1 cut(s) 406
MlyI GAGTC 3 cut(s) 815, 1028, 1040
MroI TCCGGA 1 cut(s) 838
MseI TTAA 1 cut(s) 1149
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 981
MspI CCGG 1 cut(s) 839
MspR9I CCNGG 3 cut(s) 435, 515, 525
Mva1269I GAATGC 1 cut(s) 899
MvaI CCWGG 3 cut(s) 435, 515, 525
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 255
NarI GGCGCC 1 cut(s) 406
NdeI CATATG 2 cut(s) 24, 138
NdeII GATC 4 cut(s) 555, 928, 1048, 1096
NlaIII CATG 6 cut(s) 217, 230, 340, 691, 818, 837
NlaIV GGNNCC 2 cut(s) 407, 519
NmeAIII GCCGAG 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 339
NspI RCATGY 1 cut(s) 230
NspV TTCGAA 1 cut(s) 903
PaeR7I CTCGAG 1 cut(s) 1028
PcsI WCGNNNNNNNCGW 1 cut(s) 1086
PctI GAATGC 1 cut(s) 899
PkrI GCNGC 3 cut(s) 575, 980, 983
PleI GAGTC 3 cut(s) 814, 1027, 1039
PluTI GGCGCC 1 cut(s) 409
PpsI GAGTC 3 cut(s) 814, 1027, 1039
Psp124BI GAGCTC 1 cut(s) 1089
Psp6I CCWGG 3 cut(s) 433, 513, 523
PspGI CCWGG 3 cut(s) 433, 513, 523
PspN4I GGNNCC 2 cut(s) 407, 519
PspPI GGNCC 2 cut(s) 182, 676
PspXI VCTCGAGB 1 cut(s) 1028
PsuI RGATCY 2 cut(s) 555, 1048
RsaI GTAC 4 cut(s) 120, 861, 1079, 1124
RsaNI GTAC 4 cut(s) 119, 860, 1078, 1123
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 1089
SaqAI TTAA 1 cut(s) 1149
SatI GCNGC 3 cut(s) 574, 979, 982
Sau3AI GATC 4 cut(s) 555, 928, 1048, 1096
Sau96I GGNCC 2 cut(s) 182, 676
ScaI AGTACT 1 cut(s) 120
SchI GAGTC 3 cut(s) 815, 1028, 1040
ScrFI CCNGG 3 cut(s) 435, 515, 525
SduI GDGCHC 2 cut(s) 785, 1089
SfaNI GCATC 3 cut(s) 689, 1014, 1051
SfcI CTRYAG 1 cut(s) 734
SfoI GGCGCC 1 cut(s) 407
Sfr274I CTCGAG 1 cut(s) 1028
SfuI TTCGAA 1 cut(s) 903
SinI GGWCC 2 cut(s) 182, 676
SlaI CTCGAG 1 cut(s) 1028
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 753, 1028
SmoI CTYRAG 2 cut(s) 753, 1028
SpeI ACTAGT 1 cut(s) 392
Sse9I AATT 5 cut(s) 61, 69, 382, 608, 850
SsiI CCGC 2 cut(s) 889, 981
SspDI GGCGCC 1 cut(s) 405
SspMI CTAG 5 cut(s) 48, 393, 495, 1113, 1156
SstI GAGCTC 1 cut(s) 1089
StyD4I CCNGG 3 cut(s) 433, 513, 523
TaaI ACNGT 3 cut(s) 118, 239, 738
TaqI TCGA 5 cut(s) 108, 903, 909, 1022, 1029
TasI AATT 5 cut(s) 61, 69, 382, 608, 850
TatI WGTACW 2 cut(s) 118, 1122
TauI GCSGC 1 cut(s) 984
Tru1I TTAA 1 cut(s) 1149
Tru9I TTAA 1 cut(s) 1149
TscAI CASTG 8 cut(s) 80, 285, 348, 509, 743, 949, 1099, 1149
TseFI GTSAC 1 cut(s) 339
TseI GCWGC 2 cut(s) 573, 978
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 6 cut(s) 11, 41, 57, 325, 676, 951
TspRI CASTG 8 cut(s) 80, 285, 348, 509, 743, 949, 1099, 1149
VpaK11BI GGWCC 2 cut(s) 182, 676
XapI RAATTY 4 cut(s) 61, 69, 382, 850
XbaI TCTAGA 1 cut(s) 1112
XceI RCATGY 1 cut(s) 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 521
XhoI CTCGAG 1 cut(s) 1028
XmiI GTMKAC 1 cut(s) 451
XspI CTAG 5 cut(s) 48, 393, 495, 1113, 1156
ZrmI AGTACT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.