Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Reverse (-)

60173228 .. 60175457

Gene Structure 2230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG418600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAGGTGGTGCAGATACTTCACATGAACAAAGGCAACGGCGAGGCTAGTTATGCCCAAAATTCCAAAGTTCAGAACAAAATATTTGCAATCGCAAAGCCAATCCTTGAGAAAGCCTTGCTCGAACTGTTGGGGTCAAACCGTGTTATGGCAATGGAGAGTATGGGCATAGCGGATTTGGGTTGCTCATCTGGACCTAACACCTTGCTTCTCATATCGGAGATCATGGATGTCATACATGCCCAACTCAGCAGTGGCCAGCTGCATCCCTCGTGGTCGTCAATGGAGTTTAGAGTGTTTCTCAACGACCTATTCAGCAACGACTTCAACACCGTCTTCATGACACTTCCCGCATTCTACAACAAGCTGAGAGAAGACGATCGCTACAAGAGATTGTTTGGGGCTAACCCCAACCTCTTCATTTCCGCTGTGCCGGGCTCTTTCTACGGCAGATTGTTTGCCAGAAAAAGCCTGCATTTCGTGCACTCGTCCTCCAGTCTTCACTGGCTCTCTCAGGTTCCCCCGAGCCTGGAAAGCAAGGCCGGCACGGCCTTGAACAAGGGGAAGATCTACATTTCTAAGAGCAGTCCGCAATGCGTATTGGATGCGTACTCACTTCAATTCCACGAGGACTTTTTGATGTTTCTCAAGTCTCGGGCAGAAGAAATAGTTGGAGGAGGAAGAATGGGTCTTGTGGAAGAGGAGAAAGTTGATTCCTTCAACGCTCCCTACTATGCCCCATGTGCAGAGGAACTGAAGTCGGAGTTGCAAAAGGACGGCTCCTTCATAATGGACCGACTTGAAGCGTTCGAAATTGATTGGGACGGTGGTGGTGATGTTGTTGATGATCAAGCTAATATCGTTAATGGTTTTGATCATGATCAGATGGTGGCTATTAGTGGGAAGCGGGTGGCCAAAACCATAAGAGCGGTGGTAGAGTCAATGATCGAAGCTCATTTCGGGATAGAAATTATGGATGATCTGTTTCAGAGGTACACGGAGCTCGTCACCAATCACTTGTCAAAGAGGAGAACCAAGTATATCAATTTGGTCATTTCGCTGATAAGAAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

358

Amino Acids

40.23

Weight (kDa)

5.73

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	51 - 229	7.4e-73	SAM dependent carboxyl methyltransferase
Methyltransf_7	PF03492	229 - 356	6.2e-32	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	929
AciI	CCGC	6 cut(s)	173, 351, 426, 590, 907, 929
AcoI	YGGCCR	2 cut(s)	256, 912
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	776
AfaI	GTAC	2 cut(s)	611, 995
AfiI	CCNNNNNNNGG	2 cut(s)	148, 529
AgsI	TTSAA	5 cut(s)	328, 556, 620, 721, 803
AjnI	CCWGG	1 cut(s)	528
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AluBI	AGCT	5 cut(s)	262, 367, 854, 953, 1003
AluI	AGCT	5 cut(s)	262, 367, 854, 953, 1003
Alw21I	GWGCWC	2 cut(s)	486, 1005
Alw26I	GTCTC	1 cut(s)	657
Alw44I	GTGCAC	1 cut(s)	482
Ama87I	CYCGRG	2 cut(s)	523, 654
AoxI	GGCC	4 cut(s)	256, 540, 549, 912
ApaLI	GTGCAC	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	194, 793
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	845, 1000
AsuII	TTCGAA	1 cut(s)	810
AvaI	CYCGRG	2 cut(s)	523, 654
AvaII	GGWCC	2 cut(s)	194, 793
BaeGI	GKGCMC	1 cut(s)	486
BalI	TGGCCA	2 cut(s)	258, 914
BanII	GRGCYC	2 cut(s)	440, 1005
BauI	CACGAG	2 cut(s)	271, 626
BbsI	GAAGAC	3 cut(s)	328, 381, 491
Bbv12I	GWGCWC	2 cut(s)	486, 1005
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	1 cut(s)	880
BceAI	ACGGC	4 cut(s)	55, 463, 564, 793
BciT130I	CCWGG	1 cut(s)	530
BclI	TGATCA	3 cut(s)	847, 874, 880
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	657
BfaI	CTAG	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	548
BglII	AGATCT	1 cut(s)	567
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	2 cut(s)	435, 530
Bme18I	GGWCC	2 cut(s)	194, 793
BmeT110I	CYCGRG	2 cut(s)	523, 654
BmgT120I	GGNCC	2 cut(s)	194, 793
BmiI	GGNNCC	2 cut(s)	519, 781
BmrFI	CCNGG	2 cut(s)	435, 530
BmsI	GCATC	2 cut(s)	274, 595
BpiI	GAAGAC	3 cut(s)	328, 381, 491
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
BpmI	CTGGAG	1 cut(s)	478
Bpu14I	TTCGAA	1 cut(s)	810
BpuEI	CTTGAG	2 cut(s)	128, 632
BpuMI	CCSGG	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	879
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 529
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	2 cut(s)	495, 509
Bse3DI	GCAATG	2 cut(s)	159, 599
Bse8I	GATNNNNATC	1 cut(s)	879
BseBI	CCWGG	1 cut(s)	530
BseGI	GGATG	4 cut(s)	235, 265, 610, 982
BseJI	GATNNNNATC	1 cut(s)	879
BseLI	CCNNNNNNNGG	2 cut(s)	148, 529
BseMI	GCAATG	2 cut(s)	159, 599
BseMII	CTCAG	3 cut(s)	262, 359, 527
BseNI	ACTGG	2 cut(s)	495, 509
BseRI	GAGGAG	3 cut(s)	690, 716, 1042
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	249
BsgI	GTGCAG	2 cut(s)	32, 765
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	4 cut(s)	258, 542, 551, 914
BsiEI	CGRYCG	1 cut(s)	382
BsiHKAI	GWGCWC	2 cut(s)	486, 1005
BsiHKCI	CYCGRG	2 cut(s)	523, 654
BsiSI	CCGG	2 cut(s)	434, 543
BslFI	GGGAC	1 cut(s)	836
BslI	CCNNNNNNNGG	2 cut(s)	148, 529
BsmAI	GTCTC	1 cut(s)	657
BsmFI	GGGAC	1 cut(s)	836
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	4 cut(s)	258, 542, 551, 914
BsoBI	CYCGRG	2 cut(s)	523, 654
Bsp119I	TTCGAA	1 cut(s)	810
Bsp1286I	GDGCHC	3 cut(s)	440, 486, 1005
Bsp143I	GATC	8 cut(s)	222, 379, 567, 847, 874, 880, 945, 979
BspACI	CCGC	6 cut(s)	173, 351, 426, 590, 907, 929
BspANI	GGCC	4 cut(s)	258, 542, 551, 914
BspCNI	CTCAG	3 cut(s)	261, 360, 526
BspHI	TCATGA	2 cut(s)	339, 877
BspLI	GGNNCC	2 cut(s)	519, 781
BspT104I	TTCGAA	1 cut(s)	810
BsrBI	CCGCTC	1 cut(s)	929
BsrDI	GCAATG	2 cut(s)	159, 599
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	495, 509
BssAI	RCCGGY	1 cut(s)	542
BssMI	GATC	8 cut(s)	222, 379, 567, 847, 874, 880, 945, 979
BssSI	CACGAG	2 cut(s)	271, 626
Bst2BI	CACGAG	2 cut(s)	271, 626
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	4 cut(s)	129, 143, 334, 827
Bst6I	CTCTTC	2 cut(s)	422, 693
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstBI	TTCGAA	1 cut(s)	810
BstC8I	GCNNGC	3 cut(s)	260, 473, 544
BstDEI	CTNAG	4 cut(s)	248, 368, 513, 579
BstF5I	GGATG	4 cut(s)	235, 265, 610, 982
BstKTI	GATC	8 cut(s)	225, 382, 570, 850, 877, 883, 948, 982
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	8 cut(s)	222, 379, 567, 847, 874, 880, 945, 979
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 481, 534, 543, 548, 743
BstNI	CCWGG	1 cut(s)	530
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	433, 528
BstSLI	GKGCMC	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	3 cut(s)	328, 381, 491
BstX2I	RGATCY	1 cut(s)	567
BstYI	RGATCY	1 cut(s)	567
BsuRI	GGCC	4 cut(s)	258, 542, 551, 914
BtsCI	GGATG	4 cut(s)	235, 265, 610, 982
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	259, 502
Cac8I	GCNNGC	3 cut(s)	260, 473, 544
CciI	TCATGA	2 cut(s)	339, 877
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	194, 793
Csp6I	GTAC	2 cut(s)	610, 994
CviAII	CATG	6 cut(s)	25, 226, 239, 340, 741, 878
CviQI	GTAC	2 cut(s)	610, 994
DdeI	CTNAG	4 cut(s)	248, 368, 513, 579
DpnI	GATC	8 cut(s)	224, 381, 569, 849, 876, 882, 947, 981
DpnII	GATC	8 cut(s)	222, 379, 567, 847, 874, 880, 945, 979
EaeI	YGGCCR	2 cut(s)	256, 912
Eam1104I	CTCTTC	2 cut(s)	422, 693
EarI	CTCTTC	2 cut(s)	422, 693
Ecl136II	GAGCTC	1 cut(s)	1003
Eco24I	GRGCYC	2 cut(s)	440, 1005
Eco47I	GGWCC	2 cut(s)	194, 793
Eco53kI	GAGCTC	1 cut(s)	1003
Eco57I	CTGAAG	1 cut(s)	776
Eco88I	CYCGRG	2 cut(s)	523, 654
EcoICRI	GAGCTC	1 cut(s)	1003
EcoRII	CCWGG	1 cut(s)	528
EcoT38I	GRGCYC	2 cut(s)	440, 1005
FaeI	CATG	6 cut(s)	28, 229, 242, 343, 744, 881
FaqI	GGGAC	1 cut(s)	836
FatI	CATG	6 cut(s)	24, 225, 238, 339, 740, 877
FauI	CCCGC	2 cut(s)	358, 900
FbaI	TGATCA	3 cut(s)	847, 874, 880
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	4 cut(s)	242, 252, 617, 989
FriOI	GRGCYC	2 cut(s)	440, 1005
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	478
HaeIII	GGCC	4 cut(s)	258, 542, 551, 914
HapII	CCGG	2 cut(s)	434, 543
Hin1II	CATG	6 cut(s)	28, 229, 242, 343, 744, 881
HinfI	GANTC	2 cut(s)	713, 938
HpaII	CCGG	2 cut(s)	434, 543
HphI	GGTGA	2 cut(s)	845, 1000
Hpy166II	GTNNAC	2 cut(s)	484, 996
Hpy188I	TCNGA	5 cut(s)	75, 220, 763, 885, 990
Hpy188III	TCNNGA	4 cut(s)	192, 340, 878, 961
Hpy8I	GTNNAC	2 cut(s)	484, 996
HpyAV	CCTTC	3 cut(s)	727, 793, 1062
HpyCH4III	ACNGT	4 cut(s)	129, 143, 334, 827
HpyCH4V	TGCA	7 cut(s)	13, 89, 265, 475, 484, 746, 769
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 481, 534, 543, 548, 743
HpyF3I	CTNAG	4 cut(s)	248, 368, 513, 579
Hsp92II	CATG	6 cut(s)	28, 229, 242, 343, 744, 881
KroI	GCCGGC	1 cut(s)	542
KroNI	GCCGGC	1 cut(s)	544
Ksp22I	TGATCA	3 cut(s)	847, 874, 880
Kzo9I	GATC	8 cut(s)	222, 379, 567, 847, 874, 880, 945, 979
LmnI	GCTCC	3 cut(s)	730, 785, 1000
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	2 cut(s)	274, 595
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	1006
MalI	GATC	8 cut(s)	224, 381, 569, 849, 876, 882, 947, 981
MbiI	CCGCTC	1 cut(s)	929
MboI	GATC	8 cut(s)	222, 379, 567, 847, 874, 880, 945, 979
MboII	GAAGA	8 cut(s)	328, 386, 409, 491, 577, 674, 693, 710
MflI	RGATCY	1 cut(s)	567
MhlI	GDGCHC	3 cut(s)	440, 486, 1005
MlsI	TGGCCA	2 cut(s)	258, 914
MluCI	AATT	5 cut(s)	61, 620, 813, 969, 1045
MluNI	TGGCCA	2 cut(s)	258, 914
MlyI	GAGTC	1 cut(s)	947
MmeI	TCCRAC	2 cut(s)	652, 741
Mox20I	TGGCCA	2 cut(s)	258, 914
MroNI	GCCGGC	1 cut(s)	542
MscI	TGGCCA	2 cut(s)	258, 914
MseI	TTAA	1 cut(s)	864
Msp20I	TGGCCA	2 cut(s)	258, 914
MspA1I	CMGCKG	2 cut(s)	262, 428
MspI	CCGG	2 cut(s)	434, 543
MspR9I	CCNGG	2 cut(s)	435, 530
Mva1269I	GAATGC	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	6 cut(s)	53, 481, 534, 543, 548, 743
NaeI	GCCGGC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	435
NdeII	GATC	8 cut(s)	222, 379, 567, 847, 874, 880, 945, 979
NgoMIV	GCCGGC	1 cut(s)	542
NlaIII	CATG	6 cut(s)	28, 229, 242, 343, 744, 881
NlaIV	GGNNCC	2 cut(s)	519, 781
NmuCI	GTSAC	1 cut(s)	1006
NspI	RCATGY	1 cut(s)	242
NspV	TTCGAA	1 cut(s)	810
PagI	TCATGA	2 cut(s)	339, 877
PctI	GAATGC	1 cut(s)	353
PdiI	GCCGGC	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	713
PkrI	GCNGC	1 cut(s)	264
Ple19I	CGATCG	1 cut(s)	382
PleI	GAGTC	1 cut(s)	946
PpsI	GAGTC	1 cut(s)	946
Psp124BI	GAGCTC	1 cut(s)	1005
Psp6I	CCWGG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	2 cut(s)	519, 781
PspPI	GGNCC	2 cut(s)	194, 793
PsuI	RGATCY	1 cut(s)	567
PvuI	CGATCG	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	262
RsaI	GTAC	2 cut(s)	611, 995
RsaNI	GTAC	2 cut(s)	610, 994
SacI	GAGCTC	1 cut(s)	1005
SaqAI	TTAA	1 cut(s)	864
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	8 cut(s)	222, 379, 567, 847, 874, 880, 945, 979
Sau96I	GGNCC	2 cut(s)	194, 793
SchI	GAGTC	1 cut(s)	947
ScrFI	CCNGG	2 cut(s)	435, 530
SduI	GDGCHC	3 cut(s)	440, 486, 1005
SfaNI	GCATC	2 cut(s)	274, 595
SfiI	GGCCNNNNNGGCC	1 cut(s)	548
SfuI	TTCGAA	1 cut(s)	810
SinI	GGWCC	2 cut(s)	194, 793
SmlI	CTYRAG	2 cut(s)	107, 647
SmoI	CTYRAG	2 cut(s)	107, 647
Sse9I	AATT	5 cut(s)	61, 620, 813, 969, 1045
SsiI	CCGC	6 cut(s)	173, 351, 426, 590, 907, 929
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	1 cut(s)	48
SstI	GAGCTC	1 cut(s)	1005
StyD4I	CCNGG	2 cut(s)	433, 528
TaaI	ACNGT	4 cut(s)	129, 143, 334, 827
TaqI	TCGA	3 cut(s)	123, 810, 948
TaqII	GACCGA	1 cut(s)	810
TasI	AATT	5 cut(s)	61, 620, 813, 969, 1045
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	1 cut(s)	864
Tru9I	TTAA	1 cut(s)	864
TscAI	CASTG	2 cut(s)	259, 509
TseFI	GTSAC	1 cut(s)	1006
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	1006
TspDTI	ATGAA	4 cut(s)	41, 328, 409, 775
TspGWI	ACGGA	1 cut(s)	1013
TspRI	CASTG	2 cut(s)	259, 509
VneI	GTGCAC	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	194, 793
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 928
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.