Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Reverse (-)

45692445 .. 45693488

Gene Structure 1044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0305700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAAATGGAGTCATACTCTCTCTTCCAATTCTCAAACCCTTCTCAATTCTCACCTGAATCCTCCTTCGGTTCGTCGCTAGATTCTTTATCATGGGACGACGCTTTACTCGATACTTTCAACAACGATATGTTGAACTTTCCACCATTTAACACAAATCATGAGCCTCAAGATTTGTTGCTGTTCGATGCTGTGGCTAAAGAACCAGCATTAGTGGCTGAAGAAACGCACTGGTATGGTGGAGCTGTAAAGGAAGAGGAGGTCACTTCCAATTCCAATGCCTTCCAAGTGTTTGAAGGGAAACCCAGAAAGGAAAAGTCGTACAGAGGGGTCAGGAGGAGGCCTTGGGGGAAATACGCAGCTGAGATAAGGGACTCGACGAGGCATGGAGTCAGGGTTTGGCTTGGCACTTTCGATAGTGCCGAGGCAGCTGCTTTGGCCTATGACCAAGCTGCATTTGCACTGAGGGGTCCTTTGGCTGTGCTCAATTTTCCGGTTGAAGTTGTGAGGGAGTCACTTCAAGAGATCAAGTGTAGATATGACGAAGGGTGCTCGCCAATTGTGGCACTCAAGAGGAGGCACTCGATGAGAAGAAAGTCTTTGTGCAAAAAGAATAGTTGTAATAAAGAGCAAGAAAAAGTCAAGAGTTCGATTCCTTCCAAAGTAACAAAGAATAAAACGCAAGAGAACATCGTAACGCAAAATGTGGTGGTATTAGAGGATTTGGGTGCTGAATACTTGGAGGAGCTTTTGTATCAAAGCTCATGTGAAAGTGCTAGTTTTTCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

263

Amino Acids

29.73

Weight (kDa)

5.44

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	107 - 157	9.6e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	323
AgsI	TTSAA	5 cut(s)	121, 136, 296, 500, 521
AluBI	AGCT	6 cut(s)	245, 362, 431, 452, 748, 762
AluI	AGCT	6 cut(s)	245, 362, 431, 452, 748, 762
Alw21I	GWGCWC	2 cut(s)	486, 554
AoxI	GGCC	2 cut(s)	341, 438
ApeKI	GCWGC	4 cut(s)	359, 428, 431, 452
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	470
Bbv12I	GWGCWC	2 cut(s)	486, 554
BbvI	GCAGC	4 cut(s)	371, 418, 439, 440
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BfaI	CTAG	2 cut(s)	80, 777
BisI	GCNGC	4 cut(s)	360, 429, 432, 453
BlsI	GCNGC	4 cut(s)	361, 430, 433, 454
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	1 cut(s)	471
BmsI	GCATC	1 cut(s)	178
BplI	GAGNNNNNCTC	1 cut(s)	34
BpuEI	CTTGAG	2 cut(s)	153, 554
BsaJI	CCNNGG	2 cut(s)	344, 423
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	4 cut(s)	381, 411, 737, 767
Bse1I	ACTGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	344, 423
BseMII	CTCAG	2 cut(s)	354, 455
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	4 cut(s)	272, 352, 589, 758
BseXI	GCAGC	4 cut(s)	371, 418, 439, 440
BshFI	GGCC	2 cut(s)	343, 440
BsiHKAI	GWGCWC	2 cut(s)	486, 554
BsiSI	CCGG	1 cut(s)	494
BslFI	GGGAC	2 cut(s)	110, 386
BsmFI	GGGAC	2 cut(s)	110, 386
BsnI	GGCC	2 cut(s)	343, 440
Bsp1286I	GDGCHC	2 cut(s)	486, 554
Bsp143I	GATC	1 cut(s)	525
BspANI	GGCC	2 cut(s)	343, 440
BspCNI	CTCAG	2 cut(s)	355, 456
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	344, 423
BssMI	GATC	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	344
Bst6I	CTCTTC	2 cut(s)	29, 249
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	2 cut(s)	363, 464
BstKTI	GATC	1 cut(s)	528
BstMBI	GATC	1 cut(s)	525
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 428, 437, 458
BstV1I	GCAGC	4 cut(s)	371, 418, 439, 440
BsuRI	GGCC	2 cut(s)	343, 440
BtsIMutI	CAGTG	2 cut(s)	229, 461
Cac8I	GCNNGC	1 cut(s)	554
CciI	TCATGA	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	470
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	4 cut(s)	93, 161, 386, 765
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	363, 464
DpnI	GATC	1 cut(s)	527
DpnII	GATC	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	29, 249
EarI	CTCTTC	2 cut(s)	29, 249
Eco130I	CCWWGG	1 cut(s)	344
Eco147I	AGGCCT	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	4 cut(s)	96, 164, 389, 768
FaiI	YATR	9 cut(s)	16, 94, 131, 162, 237, 387, 444, 540, 766
FalI	AAGNNNNNCTT	2 cut(s)	583, 615
FaqI	GGGAC	2 cut(s)	110, 386
FatI	CATG	4 cut(s)	92, 160, 385, 764
Fnu4HI	GCNGC	4 cut(s)	360, 429, 432, 453
Fsp4HI	GCNGC	4 cut(s)	360, 429, 432, 453
FspBI	CTAG	2 cut(s)	80, 777
GluI	GCNGC	4 cut(s)	360, 429, 432, 453
HaeIII	GGCC	2 cut(s)	343, 440
HapII	CCGG	1 cut(s)	494
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	4 cut(s)	96, 164, 389, 768
HinfI	GANTC	7 cut(s)	11, 59, 83, 374, 390, 512, 652
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	1 cut(s)	45
Hpy188III	TCNNGA	6 cut(s)	161, 170, 334, 521, 571, 643
Hpy99I	CGWCG	3 cut(s)	79, 104, 382
HpyAV	CCTTC	6 cut(s)	51, 76, 290, 292, 539, 666
HpyCH4V	TGCA	3 cut(s)	455, 461, 606
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 428, 437, 458
HpyF3I	CTNAG	2 cut(s)	363, 464
Hsp92II	CATG	4 cut(s)	96, 164, 389, 768
Kzo9I	GATC	1 cut(s)	525
LmnI	GCTCC	2 cut(s)	242, 745
LpnPI	CCDG	7 cut(s)	69, 217, 219, 319, 319, 379, 507
Lsp1109I	GCAGC	4 cut(s)	371, 418, 439, 440
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	80, 777
MaeIII	GTNAC	4 cut(s)	262, 513, 664, 694
MalI	GATC	1 cut(s)	527
MboI	GATC	1 cut(s)	525
MboII	GAAGA	4 cut(s)	16, 233, 266, 603
MfeI	CAATTG	1 cut(s)	558
MhlI	GDGCHC	2 cut(s)	486, 554
MluCI	AATT	5 cut(s)	29, 47, 271, 487, 558
MlyI	GAGTC	4 cut(s)	20, 368, 399, 521
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	2 cut(s)	362, 431
MspI	CCGG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	558
MwoI	GCNNNNNNNGC	4 cut(s)	215, 428, 437, 458
NdeII	GATC	1 cut(s)	525
NlaIII	CATG	4 cut(s)	96, 164, 389, 768
NlaIV	GGNNCC	1 cut(s)	471
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	262, 513
PagI	TCATGA	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 420
PfeI	GAWTC	3 cut(s)	59, 83, 652
PkrI	GCNGC	4 cut(s)	361, 430, 433, 454
PleI	GAGTC	4 cut(s)	19, 368, 398, 520
PpsI	GAGTC	4 cut(s)	19, 368, 398, 520
PpuMI	RGGWCCY	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	470
PspPPI	RGGWCCY	1 cut(s)	470
PvuII	CAGCTG	2 cut(s)	362, 431
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	4 cut(s)	360, 429, 432, 453
Sau3AI	GATC	1 cut(s)	525
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	4 cut(s)	20, 368, 399, 521
SduI	GDGCHC	2 cut(s)	486, 554
SetI	ASST	8 cut(s)	58, 247, 264, 364, 433, 454, 750, 764
SfaNI	GCATC	1 cut(s)	178
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	168, 569
SmoI	CTYRAG	2 cut(s)	168, 569
Sse9I	AATT	5 cut(s)	29, 47, 271, 487, 558
SseBI	AGGCCT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	80, 777
StuI	AGGCCT	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	344
TaqI	TCGA	6 cut(s)	111, 186, 377, 414, 584, 650
TasI	AATT	5 cut(s)	29, 47, 271, 487, 558
TfiI	GAWTC	3 cut(s)	59, 83, 652
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	2 cut(s)	236, 468
TseFI	GTSAC	2 cut(s)	262, 513
TseI	GCWGC	4 cut(s)	359, 428, 431, 452
Tsp45I	GTSAC	2 cut(s)	262, 513
TspRI	CASTG	2 cut(s)	236, 468
VpaK11BI	GGWCC	1 cut(s)	470
XspI	CTAG	2 cut(s)	80, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.