Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Reverse (-)

60169275 .. 60171270

Gene Structure 1996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG418500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAAGTGAAGCAAATACTTCACATGAACAAAGGGGATGACGAAACTAGTTACGCCAAAAATTCCAAAATTCAGTGCAAAATACTATCCATAACAAAGCCAATCATTGAGGAAACAGTACTGAAAATCTTGGGTTCAGATCTTGTGCCAAAACAAAGTTTTGGCATAGCAGATTTGGGTTGCTCATCTGGACCAAACTCCTTGTTACTCATTTCAGAGGTCATGGATGTCATACATGCGGAATACAGTCGCCTGACCCAGCCGAGCCTCCAGCTCCAGTCATCCACACGGGAGTTTAGAGTTTATCTCAATGACCTCTTTAGCAACGACTTCAACACCATTTTCGTGTCACTGCCAGAGTTCTACGACAAGTTCAAGCAAGACTTCAAGGATACTACTACTAGTGAGGGGCCTAATCTCTTTATTTCTGCTGTGCCTGGTTCTTTTTATGGTAGATTATTTCCCAACAAGAGCTTGCACTTTGTTCACTCTTCCTCTAGTCTTCATTGGCTCTCCCAGGTTCCCCCTGGACTAGATACAGCCTTAAACAAGGGGAAGATCTACATATCTAAGAGCAGCCCAGAATGTGTGAAGGAGTCATATTCACAGCAATTCCACAAGGACTTTTCTGTGTTTCTAAAGTCTCGCGCTGAAGAAATTGTATCCGGAGGACGAATGGTTCTGTCATTCATGGGAAGGCGATTGTCAGACCCTACAATTGAAGAGAGTTGCTATCTCCAGTGGGAGCTCTTAGCCAATGCATTAATGACCTTGGTTTTAGAGGGCTCTATTGAAGAAGAAAAAGTTGAATCGTTCCATGCTCCCTACTATGCTCCATGTCCGGACGAATTGAATTTGCAGTTACAAAAAGAAGGATCATTCGTAATGGACCGCCTTGAAGCATTCGAAATTGATTGGGATGGTGGTGCTGATCTGGATGAAAACAAGAATAACACAACCAATGAAACTGTAGCAAGCAGTGGCGAGCGAGTAGCCAAGACCATAAGAGCCGTGGTGGAGTCAATGCTCGAGTCTCATTTTGGTGAAGATCTTATGATGGATACTTTGTTTCAGAGGTACGCAGAGCTCGCCAGCGATCGCTTGTCAAAATCTAGAACCAAGTACATCAACTTGGTCATTTCACTCATTAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

385

Amino Acids

43.45

Weight (kDa)

5.08

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	50 - 384	1.6e-120	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	648
AccIII	TCCGGA	2 cut(s)	665, 841
AciI	CCGC	2 cut(s)	239, 892
AclWI	GGATC	1 cut(s)	883
AcsI	RAATTY	3 cut(s)	61, 69, 853
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	3 cut(s)	120, 1079, 1124
AgsI	TTSAA	8 cut(s)	334, 376, 388, 722, 794, 809, 853, 899
AhlI	ACTAGT	2 cut(s)	47, 401
AjnI	CCWGG	3 cut(s)	436, 516, 526
AloI	GAACNNNNNNTCC	2 cut(s)	663, 695
AluBI	AGCT	4 cut(s)	274, 474, 748, 1087
AluI	AGCT	4 cut(s)	274, 474, 748, 1087
Alw21I	GWGCWC	2 cut(s)	750, 1089
Alw26I	GTCTC	2 cut(s)	648, 1038
AlwI	GGATC	1 cut(s)	883
Ama87I	CYCGRG	1 cut(s)	1028
Aor13HI	TCCGGA	2 cut(s)	665, 841
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	576
ApoI	RAATTY	3 cut(s)	61, 69, 853
AseI	ATTAAT	1 cut(s)	764
AsiSI	GCGATCGC	1 cut(s)	1099
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	3 cut(s)	191, 410, 889
AsuHPI	GGTGA	1 cut(s)	1055
AsuII	TTCGAA	1 cut(s)	906
AvaI	CYCGRG	1 cut(s)	1028
AvaII	GGWCC	2 cut(s)	191, 889
BanII	GRGCYC	3 cut(s)	750, 788, 1089
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	2 cut(s)	750, 1089
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	2 cut(s)	914, 1051
BceAI	ACGGC	1 cut(s)	995
BciT130I	CCWGG	3 cut(s)	438, 518, 528
BciVI	GTATCC	3 cut(s)	385, 673, 1054
BcoDI	GTCTC	2 cut(s)	648, 1038
BcuI	ACTAGT	2 cut(s)	47, 401
BfaI	CTAG	5 cut(s)	48, 402, 498, 533, 1113
BfmI	CTRYAG	1 cut(s)	969
BfuI	GTATCC	3 cut(s)	385, 673, 1054
BglII	AGATCT	3 cut(s)	139, 558, 1048
BisI	GCNGC	1 cut(s)	577
BlsI	GCNGC	1 cut(s)	578
BmcAI	AGTACT	1 cut(s)	120
Bme1390I	CCNGG	3 cut(s)	438, 518, 528
Bme18I	GGWCC	2 cut(s)	191, 889
BmeT110I	CYCGRG	1 cut(s)	1028
BmgT120I	GGNCC	3 cut(s)	191, 410, 889
BmiI	GGNNCC	2 cut(s)	411, 522
BmrFI	CCNGG	3 cut(s)	438, 518, 528
BpiI	GAAGAC	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
BpmI	CTGGAG	3 cut(s)	254, 260, 722
Bpu14I	TTCGAA	1 cut(s)	906
BsaJI	CCNNGG	4 cut(s)	516, 526, 771, 1011
BsaWI	WCCGGW	2 cut(s)	665, 841
Bse1I	ACTGG	2 cut(s)	277, 739
BseAI	TCCGGA	2 cut(s)	665, 841
BseBI	CCWGG	3 cut(s)	438, 518, 528
BseDI	CCNNGG	4 cut(s)	516, 526, 771, 1011
BseGI	GGATG	5 cut(s)	43, 232, 281, 925, 943
BseNI	ACTGG	2 cut(s)	277, 739
BseXI	GCAGC	1 cut(s)	588
BseYI	CCCAGC	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	648
Bsh1285I	CGRYCG	1 cut(s)	1099
BshFI	GGCC	1 cut(s)	412
BsiEI	CGRYCG	1 cut(s)	1099
BsiHKAI	GWGCWC	2 cut(s)	750, 1089
BsiHKCI	CYCGRG	1 cut(s)	1028
BsiSI	CCGG	2 cut(s)	666, 842
BsmAI	GTCTC	2 cut(s)	648, 1038
BsmI	GAATGC	1 cut(s)	902
BsnI	GGCC	1 cut(s)	412
BsoBI	CYCGRG	1 cut(s)	1028
Bsp119I	TTCGAA	1 cut(s)	906
Bsp1286I	GDGCHC	3 cut(s)	750, 788, 1089
Bsp13I	TCCGGA	2 cut(s)	665, 841
Bsp143I	GATC	6 cut(s)	139, 558, 875, 931, 1048, 1096
BspACI	CCGC	2 cut(s)	239, 892
BspANI	GGCC	1 cut(s)	412
BspEI	TCCGGA	2 cut(s)	665, 841
BspFNI	CGCG	1 cut(s)	648
BspLI	GGNNCC	2 cut(s)	411, 522
BspPI	GGATC	1 cut(s)	883
BspT104I	TTCGAA	1 cut(s)	906
BsrI	ACTGG	2 cut(s)	277, 739
BssECI	CCNNGG	4 cut(s)	516, 526, 771, 1011
BssMI	GATC	6 cut(s)	139, 558, 875, 931, 1048, 1096
BssT1I	CCWWGG	1 cut(s)	771
Bst2UI	CCWGG	3 cut(s)	438, 518, 528
Bst4CI	ACNGT	3 cut(s)	118, 248, 970
Bst6I	CTCTTC	2 cut(s)	496, 717
BstBI	TTCGAA	1 cut(s)	906
BstC8I	GCNNGC	5 cut(s)	476, 976, 986, 1089, 1093
BstDEI	CTNAG	2 cut(s)	570, 751
BstDSI	CCRYGG	1 cut(s)	1011
BstF5I	GGATG	5 cut(s)	43, 232, 281, 925, 943
BstFNI	CGCG	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	6 cut(s)	142, 561, 878, 934, 1051, 1099
BstMAI	GTCTC	2 cut(s)	648, 1038
BstMBI	GATC	6 cut(s)	139, 558, 875, 931, 1048, 1096
BstMCI	CGRYCG	1 cut(s)	1099
BstMWI	GCNNNNNNNGC	1 cut(s)	1088
BstNI	CCWGG	3 cut(s)	438, 518, 528
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	3 cut(s)	436, 516, 526
BstSFI	CTRYAG	1 cut(s)	969
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	3 cut(s)	139, 558, 1048
BstYI	RGATCY	3 cut(s)	139, 558, 1048
BsuI	GTATCC	3 cut(s)	385, 673, 1054
BsuRI	GGCC	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	1011
BtsCI	GGATG	5 cut(s)	43, 232, 281, 925, 943
BtsI	GCAGTG	2 cut(s)	350, 985
BtsIMutI	CAGTG	4 cut(s)	80, 350, 746, 985
Cac8I	GCNNGC	5 cut(s)	476, 976, 986, 1089, 1093
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	3 cut(s)	191, 410, 889
Csp6I	GTAC	3 cut(s)	119, 1078, 1123
CviAII	CATG	6 cut(s)	25, 223, 236, 691, 818, 837
CviQI	GTAC	3 cut(s)	119, 1078, 1123
DdeI	CTNAG	2 cut(s)	570, 751
DpnI	GATC	6 cut(s)	141, 560, 877, 933, 1050, 1098
DpnII	GATC	6 cut(s)	139, 558, 875, 931, 1048, 1096
Eam1104I	CTCTTC	2 cut(s)	496, 717
EarI	CTCTTC	2 cut(s)	496, 717
Ecl136II	GAGCTC	2 cut(s)	748, 1087
Eco130I	CCWWGG	1 cut(s)	771
Eco24I	GRGCYC	3 cut(s)	750, 788, 1089
Eco47I	GGWCC	2 cut(s)	191, 889
Eco53kI	GAGCTC	2 cut(s)	748, 1087
Eco57I	CTGAAG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	1028
EcoICRI	GAGCTC	2 cut(s)	748, 1087
EcoO109I	RGGNCCY	1 cut(s)	410
EcoRII	CCWGG	3 cut(s)	436, 516, 526
EcoT14I	CCWWGG	1 cut(s)	771
EcoT22I	ATGCAT	1 cut(s)	763
EcoT38I	GRGCYC	3 cut(s)	750, 788, 1089
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	6 cut(s)	28, 226, 239, 694, 821, 840
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	6 cut(s)	24, 222, 235, 690, 817, 836
Fnu4HI	GCNGC	1 cut(s)	577
FokI	GGATG	5 cut(s)	50, 239, 268, 932, 950
FriOI	GRGCYC	3 cut(s)	750, 788, 1089
Fsp4HI	GCNGC	1 cut(s)	577
FspBI	CTAG	5 cut(s)	48, 402, 498, 533, 1113
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	1 cut(s)	577
GsaI	CCCAGC	1 cut(s)	262
GsuI	CTGGAG	3 cut(s)	254, 260, 722
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	2 cut(s)	666, 842
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	6 cut(s)	28, 226, 239, 694, 821, 840
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	4 cut(s)	596, 809, 1019, 1031
HpaII	CCGG	2 cut(s)	666, 842
HphI	GGTGA	1 cut(s)	1055
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	4 cut(s)	139, 217, 709, 1074
Hpy188III	TCNNGA	5 cut(s)	189, 666, 842, 935, 1113
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	3 cut(s)	586, 690, 866
HpyCH4III	ACNGT	3 cut(s)	118, 248, 970
HpyCH4V	TGCA	4 cut(s)	78, 478, 761, 859
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1088
HpyF3I	CTNAG	2 cut(s)	570, 751
Hsp92II	CATG	6 cut(s)	28, 226, 239, 694, 821, 840
HspAI	GCGC	1 cut(s)	648
Kpn2I	TCCGGA	2 cut(s)	665, 841
Kzo9I	GATC	6 cut(s)	139, 558, 875, 931, 1048, 1096
LmnI	GCTCC	4 cut(s)	279, 745, 826, 838
Lsp1109I	GCAGC	1 cut(s)	588
MaeI	CTAG	5 cut(s)	48, 402, 498, 533, 1113
MaeIII	GTNAC	4 cut(s)	50, 204, 348, 861
MalI	GATC	6 cut(s)	141, 560, 877, 933, 1050, 1098
MboI	GATC	6 cut(s)	139, 558, 875, 931, 1048, 1096
MboII	GAAGA	8 cut(s)	483, 494, 568, 665, 734, 806, 809, 1058
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	3 cut(s)	139, 558, 1048
MhlI	GDGCHC	3 cut(s)	750, 788, 1089
MluCI	AATT	8 cut(s)	61, 69, 611, 657, 717, 848, 853, 909
MlyI	GAGTC	3 cut(s)	605, 1028, 1040
MnlI	CCTC	9 cut(s)	103, 211, 278, 326, 400, 505, 662, 775, 1068
Mph1103I	ATGCAT	1 cut(s)	763
MroI	TCCGGA	2 cut(s)	665, 841
MseI	TTAA	3 cut(s)	545, 764, 1149
MslI	CAYNNNNRTG	2 cut(s)	344, 1041
MspI	CCGG	2 cut(s)	666, 842
MspR9I	CCNGG	3 cut(s)	438, 518, 528
MunI	CAATTG	1 cut(s)	717
Mva1269I	GAATGC	1 cut(s)	902
MvaI	CCWGG	3 cut(s)	438, 518, 528
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	1 cut(s)	1088
NdeII	GATC	6 cut(s)	139, 558, 875, 931, 1048, 1096
NlaIII	CATG	6 cut(s)	28, 226, 239, 694, 821, 840
NlaIV	GGNNCC	2 cut(s)	411, 522
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	348
NsiI	ATGCAT	1 cut(s)	763
NspI	RCATGY	1 cut(s)	239
NspV	TTCGAA	1 cut(s)	906
PaeR7I	CTCGAG	1 cut(s)	1028
PctI	GAATGC	1 cut(s)	902
PfeI	GAWTC	1 cut(s)	809
PkrI	GCNGC	1 cut(s)	578
Ple19I	CGATCG	1 cut(s)	1099
PleI	GAGTC	3 cut(s)	604, 1027, 1039
PpsI	GAGTC	3 cut(s)	604, 1027, 1039
PshBI	ATTAAT	1 cut(s)	764
Psp124BI	GAGCTC	2 cut(s)	750, 1089
Psp6I	CCWGG	3 cut(s)	436, 516, 526
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	3 cut(s)	436, 516, 526
PspN4I	GGNNCC	2 cut(s)	411, 522
PspPI	GGNCC	3 cut(s)	191, 410, 889
PspXI	VCTCGAGB	1 cut(s)	1028
PsuI	RGATCY	3 cut(s)	139, 558, 1048
PvuI	CGATCG	1 cut(s)	1099
RgaI	GCGATCGC	1 cut(s)	1099
RsaI	GTAC	3 cut(s)	120, 1079, 1124
RsaNI	GTAC	3 cut(s)	119, 1078, 1123
RseI	CAYNNNNRTG	2 cut(s)	344, 1041
SacI	GAGCTC	2 cut(s)	750, 1089
SaqAI	TTAA	3 cut(s)	545, 764, 1149
SatI	GCNGC	1 cut(s)	577
Sau3AI	GATC	6 cut(s)	139, 558, 875, 931, 1048, 1096
Sau96I	GGNCC	3 cut(s)	191, 410, 889
ScaI	AGTACT	1 cut(s)	120
SchI	GAGTC	3 cut(s)	605, 1028, 1040
ScrFI	CCNGG	3 cut(s)	438, 518, 528
SduI	GDGCHC	3 cut(s)	750, 788, 1089
SetI	ASST	9 cut(s)	222, 276, 318, 476, 522, 750, 773, 1079, 1089
SfaAI	GCGATCGC	1 cut(s)	1099
SfcI	CTRYAG	1 cut(s)	969
Sfr274I	CTCGAG	1 cut(s)	1028
SfuI	TTCGAA	1 cut(s)	906
SgfI	GCGATCGC	1 cut(s)	1099
SinI	GGWCC	2 cut(s)	191, 889
SlaI	CTCGAG	1 cut(s)	1028
SmiMI	CAYNNNNRTG	2 cut(s)	344, 1041
SmlI	CTYRAG	1 cut(s)	1028
SmoI	CTYRAG	1 cut(s)	1028
SpeI	ACTAGT	2 cut(s)	47, 401
Sse9I	AATT	8 cut(s)	61, 69, 611, 657, 717, 848, 853, 909
SsiI	CCGC	2 cut(s)	239, 892
SspMI	CTAG	5 cut(s)	48, 402, 498, 533, 1113
SstI	GAGCTC	2 cut(s)	750, 1089
StyD4I	CCNGG	3 cut(s)	436, 516, 526
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	3 cut(s)	118, 248, 970
TaqI	TCGA	2 cut(s)	906, 1029
TasI	AATT	8 cut(s)	61, 69, 611, 657, 717, 848, 853, 909
TatI	WGTACW	2 cut(s)	118, 1122
TfiI	GAWTC	1 cut(s)	809
Tru1I	TTAA	3 cut(s)	545, 764, 1149
Tru9I	TTAA	3 cut(s)	545, 764, 1149
TscAI	CASTG	4 cut(s)	80, 357, 746, 985
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	1 cut(s)	576
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	5 cut(s)	41, 494, 679, 954, 978
TspRI	CASTG	4 cut(s)	80, 357, 746, 985
VpaK11BI	GGWCC	2 cut(s)	191, 889
VspI	ATTAAT	1 cut(s)	764
XapI	RAATTY	3 cut(s)	61, 69, 853
XbaI	TCTAGA	1 cut(s)	1112
XceI	RCATGY	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	2 cut(s)	524, 1009
XhoI	CTCGAG	1 cut(s)	1028
XspI	CTAG	5 cut(s)	48, 402, 498, 533, 1113
ZrmI	AGTACT	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.