Rh4AG385100

Jasmonate O-methyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001051
Physical Location & Seq
Reverse (-)
69113366 .. 69115050
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG385100.1

Sequence Viewer

Length: 1332 bp
ATGAAGTTTATAAAATCTCAACCTCGAACCACTCCTGCAGAGCCTAGTTACATCGATCGATCGCCTGACAGAGTTGGAGAGATGGAGGTGACGCAAATACTTCACATGAACAACGGAGATGACGAGACTAGCTATGCCAAAAACTCTACAGTTCAGAGAAAAACATTATCCATAGCCAAGCCGATCATTGAGGAAGCAGTGCTAGAACTCTTGGGATCCAATATCATGGCAATAGAGAGCATGGGAATAGCAGATTTGGGTTGCTCATCCGGACCCAACACCTTACTACTCATCTCGCAGATCATGGATGCCATACATGCTATACCTAGCAAAGTTACAGAGCTTAGAGTGTTTCTAAATGACCTCTTTAGCAACGACTTCAACTCCATCTTCATGTCACTCCCATCATTCTACCAAAAACTGAAACAAGACTATGATAATAGTCGTGATCCCGATCAGCATGTCATAAATCCGTTGATTTCTGCTGTGCCCGGTTCGTTTTACGGTCCATTGTTTCCCAGAAAGAGCGTGCACTTTGTTCATTCTTCTTTTAGTCTTCACTGGCTCTCTCAGGTGCCCGATGGCCTAAACAACAAAGGAAATATATACATTTCTAAGAGCAGCCCGCAGTGCGTATTAGACGCATACTCCATGCAGTTTCAGAAAGACTTTTCCGTTTTTCTGAGGTTTAGGGCACAAGAAATAGCCGAGGGAGGACGAATGGTGTTGTCCTTCATGGGCAGGCCATCCACTGACCCAACAGCTGATCAGGGCACTTTCTACCAGTTCGAGCTCTTAGCCCACGCATTAATGGACACGGTGTCCAAGGTAAGACTCGATCATTTTATCCATTGCTTCGATCTTCTTGCATGCTTCGCAGAAAAATATTTCTACATCCATCACTACCTAACTATCAATTGTTATTTTCTATTGTTCCAGGGTCTTATAAAAGAGGAAATGGTTAATTCCTTCAACATGCCCTACTATACTTCATGTGCAGAGGAATTGAATTTGGTGTTACAAAAAGAAGGGTCTTTCATCAAGGACCGCCTTGAAGCATTCGAAGTGAATTGGGATACTGGTGGTGCTGATCTCGATCACAACATGCCTAACGGTGCATTTGACCATGATCAAACAATAACAAGCAGTGGGCAGCGAGTGGCCAATAGCATAAGAGTCGTGGCCGAGTCAATGCTCGAATCTCATTTTGGAAAAGAGATAATGGATGAGGTGTTTAAGAAATATACAGAGCTCGTTAGCAAGCACTTATCAAATAGTACTACTAGACCGAAGTATACAGTTTTGGTCACCTCACTCATTCGAAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

443

Amino Acids

50.24

Weight (kDa)

5.68

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 74 - 276 5.5e-77 SAM dependent carboxyl methyltransferase
Methyltransf_7 PF03492 310 - 441 5.8e-28 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 11, 947
AccB1I GGYRCC 1 cut(s) 574
AccI GTMKAC 1 cut(s) 1295
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 2 cut(s) 626, 1048
AclWI GGATC 3 cut(s) 210, 223, 443
AcoI YGGCCR 2 cut(s) 1161, 1182
AcsI RAATTY 1 cut(s) 1009
AfaI GTAC 1 cut(s) 1279
AgsI TTSAA 4 cut(s) 382, 973, 1009, 1055
AhdI GACNNNNNGTC 1 cut(s) 820
AjnI CCWGG 1 cut(s) 936
AjuI GAANNNNNNNTTGG 2 cut(s) 1191, 1223
AluBI AGCT 5 cut(s) 132, 343, 764, 793, 1252
AluI AGCT 5 cut(s) 132, 343, 764, 793, 1252
Alw21I GWGCWC 3 cut(s) 534, 795, 1254
Alw26I GTCTC 1 cut(s) 119
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 3 cut(s) 210, 223, 443
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 4 cut(s) 583, 743, 1161, 1182
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 2 cut(s) 621, 1153
ApoI RAATTY 1 cut(s) 1009
AseI ATTAAT 1 cut(s) 809
AspS9I GGNCC 3 cut(s) 272, 506, 1045
AsuC2I CCSGG 1 cut(s) 492
AsuHPI GGTGA 2 cut(s) 100, 1300
AsuII TTCGAA 2 cut(s) 1062, 1321
AvaII GGWCC 3 cut(s) 272, 506, 1045
BaeGI GKGCMC 5 cut(s) 492, 534, 579, 697, 776
BalI TGGCCA 1 cut(s) 1163
BamHI GGATCC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 574
BanII GRGCYC 2 cut(s) 795, 1254
BbsI GAAGAC 1 cut(s) 548
Bbv12I GWGCWC 3 cut(s) 534, 795, 1254
BbvI GCAGC 2 cut(s) 633, 1165
BccI CCATC 6 cut(s) 76, 395, 412, 575, 754, 906
BcgI CGANNNNNNTGC 4 cut(s) 848, 882, 1159, 1193
BciT130I CCWGG 1 cut(s) 938
BciVI GTATCC 1 cut(s) 1069
BclI TGATCA 2 cut(s) 766, 1129
BcnI CCSGG 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 5 cut(s) 45, 129, 203, 327, 1284
BfmI CTRYAG 2 cut(s) 36, 147
BfuI GTATCC 1 cut(s) 1069
BisI GCNGC 2 cut(s) 622, 1154
BlsI GCNGC 2 cut(s) 623, 1155
BmcAI AGTACT 1 cut(s) 1279
Bme1390I CCNGG 2 cut(s) 492, 938
Bme18I GGWCC 3 cut(s) 272, 506, 1045
BmeRI GACNNNNNGTC 1 cut(s) 820
BmgT120I GGNCC 3 cut(s) 272, 506, 1045
BmiI GGNNCC 3 cut(s) 217, 274, 576
BmrFI CCNGG 2 cut(s) 492, 938
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 548
Bpu14I TTCGAA 2 cut(s) 1062, 1321
BpuMI CCSGG 1 cut(s) 492
Bsa29I ATCGAT 2 cut(s) 54, 58
BsaBI GATNNNNATC 2 cut(s) 453, 1095
BsaJI CCNNGG 3 cut(s) 708, 825, 937
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 4 cut(s) 368, 398, 632, 662
Bse1I ACTGG 3 cut(s) 566, 784, 1084
Bse3DI GCAATG 1 cut(s) 850
Bse8I GATNNNNATC 2 cut(s) 453, 1095
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 1 cut(s) 938
BseCI ATCGAT 2 cut(s) 54, 58
BseDI CCNNGG 3 cut(s) 708, 825, 937
BseGI GGATG 5 cut(s) 266, 313, 746, 894, 1231
BseJI GATNNNNATC 2 cut(s) 453, 1095
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 2 cut(s) 584, 674
BseNI ACTGG 3 cut(s) 566, 784, 1084
BseSI GKGCMC 5 cut(s) 492, 534, 579, 697, 776
BseXI GCAGC 2 cut(s) 633, 1165
BsgI GTGCAG 1 cut(s) 1017
Bsh1285I CGRYCG 2 cut(s) 58, 62
BshFI GGCC 4 cut(s) 585, 745, 1163, 1184
BshNI GGYRCC 1 cut(s) 574
BshVI ATCGAT 2 cut(s) 54, 58
BsiEI CGRYCG 2 cut(s) 58, 62
BsiHKAI GWGCWC 3 cut(s) 534, 795, 1254
BsiSI CCGG 2 cut(s) 270, 492
BsmAI GTCTC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 1058
BsnI GGCC 4 cut(s) 585, 745, 1163, 1184
Bsp119I TTCGAA 2 cut(s) 1062, 1321
Bsp1286I GDGCHC 7 cut(s) 492, 534, 579, 697, 776, 795, 1254
Bsp13I TCCGGA 1 cut(s) 269
BspACI CCGC 2 cut(s) 626, 1048
BspANI GGCC 4 cut(s) 585, 745, 1163, 1184
BspCNI CTCAG 2 cut(s) 583, 675
BspDI ATCGAT 2 cut(s) 54, 58
BspEI TCCGGA 1 cut(s) 269
BspLI GGNNCC 3 cut(s) 217, 274, 576
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 3 cut(s) 210, 223, 443
BspT104I TTCGAA 2 cut(s) 1062, 1321
BspT107I GGYRCC 1 cut(s) 574
BsrDI GCAATG 1 cut(s) 850
BsrI ACTGG 3 cut(s) 566, 784, 1084
BssECI CCNNGG 3 cut(s) 708, 825, 937
BssNAI GTATAC 1 cut(s) 1296
BssT1I CCWWGG 1 cut(s) 825
Bst1107I GTATAC 1 cut(s) 1296
Bst2UI CCWGG 1 cut(s) 938
Bst4CI ACNGT 5 cut(s) 151, 506, 820, 1115, 1300
BstBI TTCGAA 2 cut(s) 1062, 1321
BstC8I GCNNGC 5 cut(s) 530, 626, 743, 871, 1262
BstDEI CTNAG 5 cut(s) 344, 570, 615, 683, 796
BstEII GGTNACC 1 cut(s) 1306
BstF5I GGATG 5 cut(s) 266, 313, 746, 894, 1231
BstMAI GTCTC 1 cut(s) 119
BstMCI CGRYCG 2 cut(s) 58, 62
BstMWI GCNNNNNNNGC 3 cut(s) 317, 630, 875
BstNI CCWGG 1 cut(s) 938
BstNSI RCATGY 5 cut(s) 320, 464, 873, 979, 1108
BstPI GGTNACC 1 cut(s) 1306
BstSCI CCNGG 2 cut(s) 490, 936
BstSFI CTRYAG 2 cut(s) 36, 147
BstSLI GKGCMC 5 cut(s) 492, 534, 579, 697, 776
BstV1I GCAGC 2 cut(s) 633, 1165
BstV2I GAAGAC 1 cut(s) 548
BstX2I RGATCY 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 1 cut(s) 215
BstZ17I GTATAC 1 cut(s) 1296
Bsu15I ATCGAT 2 cut(s) 54, 58
BsuI GTATCC 1 cut(s) 1069
BsuRI GGCC 4 cut(s) 585, 745, 1163, 1184
BsuTUI ATCGAT 2 cut(s) 54, 58
BtsCI GGATG 5 cut(s) 266, 313, 746, 894, 1231
BtsI GCAGTG 3 cut(s) 204, 635, 1153
BtsIMutI CAGTG 5 cut(s) 204, 559, 635, 750, 1153
Cac8I GCNNGC 5 cut(s) 530, 626, 743, 871, 1262
Cfr13I GGNCC 3 cut(s) 272, 506, 1045
ClaI ATCGAT 2 cut(s) 54, 58
CseI GACGC 2 cut(s) 100, 650
Csp6I GTAC 1 cut(s) 1278
CviQI GTAC 1 cut(s) 1278
DdeI CTNAG 5 cut(s) 344, 570, 615, 683, 796
DriI GACNNNNNGTC 1 cut(s) 820
EaeI YGGCCR 2 cut(s) 1161, 1182
Eam1105I GACNNNNNGTC 1 cut(s) 820
Ecl136II GAGCTC 2 cut(s) 793, 1252
Eco130I CCWWGG 1 cut(s) 825
Eco24I GRGCYC 2 cut(s) 795, 1254
Eco47I GGWCC 3 cut(s) 272, 506, 1045
Eco53kI GAGCTC 2 cut(s) 793, 1252
Eco91I GGTNACC 1 cut(s) 1306
EcoICRI GAGCTC 2 cut(s) 793, 1252
EcoO65I GGTNACC 1 cut(s) 1306
EcoRII CCWGG 1 cut(s) 936
EcoT14I CCWWGG 1 cut(s) 825
EcoT38I GRGCYC 2 cut(s) 795, 1254
ErhI CCWWGG 1 cut(s) 825
FauI CCCGC 1 cut(s) 633
FbaI TGATCA 2 cut(s) 766, 1129
FblI GTMKAC 1 cut(s) 1295
Fnu4HI GCNGC 2 cut(s) 622, 1154
FokI GGATG 5 cut(s) 253, 320, 733, 881, 1238
FriOI GRGCYC 2 cut(s) 795, 1254
Fsp4HI GCNGC 2 cut(s) 622, 1154
FspBI CTAG 5 cut(s) 45, 129, 203, 327, 1284
GluI GCNGC 2 cut(s) 622, 1154
HaeIII GGCC 4 cut(s) 585, 745, 1163, 1184
HapII CCGG 2 cut(s) 270, 492
HgaI GACGC 2 cut(s) 100, 650
HinfI GANTC 4 cut(s) 834, 1176, 1187, 1199
HpaII CCGG 2 cut(s) 270, 492
HphI GGTGA 2 cut(s) 100, 1300
Hpy166II GTNNAC 2 cut(s) 532, 1296
Hpy188I TCNGA 3 cut(s) 156, 663, 684
Hpy188III TCNNGA 4 cut(s) 270, 446, 452, 1094
Hpy8I GTNNAC 2 cut(s) 532, 1296
HpyAV CCTTC 3 cut(s) 742, 979, 1022
HpyCH4III ACNGT 5 cut(s) 151, 506, 820, 1115, 1300
HpyCH4V TGCA 6 cut(s) 38, 532, 655, 869, 998, 1118
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 630, 875
HpyF3I CTNAG 5 cut(s) 344, 570, 615, 683, 796
Kpn2I TCCGGA 1 cut(s) 269
Ksp22I TGATCA 2 cut(s) 766, 1129
Lsp1109I GCAGC 2 cut(s) 633, 1165
LweI GCATC 1 cut(s) 298
MaeI CTAG 5 cut(s) 45, 129, 203, 327, 1284
MaeIII GTNAC 6 cut(s) 47, 88, 334, 396, 1017, 1306
MboII GAAGA 4 cut(s) 382, 537, 548, 854
MfeI CAATTG 1 cut(s) 916
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 7 cut(s) 492, 534, 579, 697, 776, 795, 1254
MlsI TGGCCA 1 cut(s) 1163
MluCI AATT 5 cut(s) 916, 964, 1004, 1009, 1069
MluNI TGGCCA 1 cut(s) 1163
MlyI GAGTC 3 cut(s) 828, 1185, 1196
MmeI TCCRAC 1 cut(s) 55
Mox20I TGGCCA 1 cut(s) 1163
MroI TCCGGA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 1163
MseI TTAA 3 cut(s) 809, 963, 1236
MslI CAYNNNNRTG 1 cut(s) 392
Msp20I TGGCCA 1 cut(s) 1163
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 2 cut(s) 270, 492
MspR9I CCNGG 2 cut(s) 492, 938
MunI CAATTG 1 cut(s) 916
Mva1269I GAATGC 1 cut(s) 1058
MvaI CCWGG 1 cut(s) 938
MwoI GCNNNNNNNGC 3 cut(s) 317, 630, 875
NciI CCSGG 1 cut(s) 492
NlaIV GGNNCC 3 cut(s) 217, 274, 576
NmeAIII GCCGAG 2 cut(s) 733, 1210
NmuCI GTSAC 3 cut(s) 88, 396, 1306
NspI RCATGY 5 cut(s) 320, 464, 873, 979, 1108
NspV TTCGAA 2 cut(s) 1062, 1321
PaeI GCATGC 1 cut(s) 873
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 1 cut(s) 1058
PfeI GAWTC 1 cut(s) 1199
PkrI GCNGC 2 cut(s) 623, 1155
Ple19I CGATCG 2 cut(s) 58, 62
PleI GAGTC 3 cut(s) 828, 1184, 1195
PpsI GAGTC 3 cut(s) 828, 1184, 1195
PshBI ATTAAT 1 cut(s) 809
PsiI TTATAA 2 cut(s) 11, 947
Psp124BI GAGCTC 2 cut(s) 795, 1254
Psp6I CCWGG 1 cut(s) 936
PspEI GGTNACC 1 cut(s) 1306
PspGI CCWGG 1 cut(s) 936
PspN4I GGNNCC 3 cut(s) 217, 274, 576
PspPI GGNCC 3 cut(s) 272, 506, 1045
PstI CTGCAG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 215
PvuI CGATCG 2 cut(s) 58, 62
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 1 cut(s) 1279
RsaNI GTAC 1 cut(s) 1278
RseI CAYNNNNRTG 1 cut(s) 392
SacI GAGCTC 2 cut(s) 795, 1254
SaqAI TTAA 3 cut(s) 809, 963, 1236
SatI GCNGC 2 cut(s) 622, 1154
Sau96I GGNCC 3 cut(s) 272, 506, 1045
ScaI AGTACT 1 cut(s) 1279
SchI GAGTC 3 cut(s) 828, 1185, 1196
ScrFI CCNGG 2 cut(s) 492, 938
SduI GDGCHC 7 cut(s) 492, 534, 579, 697, 776, 795, 1254
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 2 cut(s) 36, 147
SfuI TTCGAA 2 cut(s) 1062, 1321
SinI GGWCC 3 cut(s) 272, 506, 1045
SmiMI CAYNNNNRTG 1 cut(s) 392
SphI GCATGC 1 cut(s) 873
Sse9I AATT 5 cut(s) 916, 964, 1004, 1009, 1069
SsiI CCGC 2 cut(s) 626, 1048
SspI AATATT 1 cut(s) 887
SspMI CTAG 5 cut(s) 45, 129, 203, 327, 1284
SstI GAGCTC 2 cut(s) 795, 1254
StyD4I CCNGG 2 cut(s) 490, 936
StyI CCWWGG 1 cut(s) 825
TaaI ACNGT 5 cut(s) 151, 506, 820, 1115, 1300
TaqII GACCGA 1 cut(s) 1303
TasI AATT 5 cut(s) 916, 964, 1004, 1009, 1069
TatI WGTACW 1 cut(s) 1277
TfiI GAWTC 1 cut(s) 1199
Tru1I TTAA 3 cut(s) 809, 963, 1236
Tru9I TTAA 3 cut(s) 809, 963, 1236
TscAI CASTG 5 cut(s) 204, 566, 635, 757, 1153
TseFI GTSAC 3 cut(s) 88, 396, 1306
TseI GCWGC 2 cut(s) 621, 1153
Tsp45I GTSAC 3 cut(s) 88, 396, 1306
TspDTI ATGAA 7 cut(s) 17, 122, 382, 530, 724, 981, 1027
TspGWI ACGGA 3 cut(s) 129, 462, 664
TspRI CASTG 5 cut(s) 204, 566, 635, 757, 1153
VneI GTGCAC 1 cut(s) 530
VpaK11BI GGWCC 3 cut(s) 272, 506, 1045
VspI ATTAAT 1 cut(s) 809
XapI RAATTY 1 cut(s) 1009
XceI RCATGY 5 cut(s) 320, 464, 873, 979, 1108
XmiI GTMKAC 1 cut(s) 1295
XspI CTAG 5 cut(s) 45, 129, 203, 327, 1284
ZrmI AGTACT 1 cut(s) 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.