Rorug04G0333400

Jasmonate O-methyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001051
Physical Location & Seq
Reverse (-)
50801628 .. 50803243
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0333400.1

Sequence Viewer

Length: 339 bp
ATGCAGCGTGTGAGAGTCCAAATTGATGAGCTAAGCTTGTGCTATATCCAAAATCTACAAGAGGATTGTTCTTTCCTTGTCTTCACTGAGACTGAGTTGGCTGGGGTACCACAAGAGTTTCTCAAGAGCTTAGACAAAGCTAAAAATGGTAAATTGAAGGTGACCCTGAAAAGTCATCATGTGGGGGCGGTACTAGAAATTTGCGAGATTTCAATTTTTATAGAGGACAATGCATTGGGTGCATGTTACCTTTTGATGATCAGTAACCATTCTAAGTGCATCGGAGAGGAGATGGATTTGGCCTTAAGGAAATCTCATGAGAGCTTCCATCGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

112

Amino Acids

12.67

Weight (kDa)

5.68

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 106
AciI CCGC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 198
AfaI GTAC 2 cut(s) 108, 192
AflII CTTAAG 1 cut(s) 304
AgsI TTSAA 2 cut(s) 157, 213
AluBI AGCT 5 cut(s) 31, 36, 129, 140, 324
AluI AGCT 5 cut(s) 31, 36, 129, 140, 324
Alw26I GTCTC 1 cut(s) 83
AoxI GGCC 1 cut(s) 300
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 198
Asp718I GGTACC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 172
BanI GGYRCC 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 286, 336
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 194
BfrI CTTAAG 1 cut(s) 304
BisI GCNGC 1 cut(s) 5
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 108
BmsI GCATC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 73
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 107
BseMII CTCAG 2 cut(s) 78, 84
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 302
BshNI GGYRCC 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 302
Bsp143I GATC 1 cut(s) 258
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 1 cut(s) 188
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 2 cut(s) 79, 85
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 108
BspT107I GGYRCC 1 cut(s) 106
BspTI CTTAAG 1 cut(s) 304
BssMI GATC 1 cut(s) 258
BstAFI CTTAAG 1 cut(s) 304
BstAPI GCANNNNNTGC 1 cut(s) 239
BstDEI CTNAG 5 cut(s) 32, 87, 93, 130, 273
BstEII GGTNACC 1 cut(s) 160
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 246
BstPI GGTNACC 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 73
BsuRI GGCC 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 84
CciI TCATGA 1 cut(s) 316
Csp6I GTAC 2 cut(s) 107, 191
CviAII CATG 3 cut(s) 179, 243, 317
CviJI RGCY 7 cut(s) 31, 36, 101, 129, 140, 302, 324
CviKI_1 RGCY 7 cut(s) 31, 36, 101, 129, 140, 302, 324
CviQI GTAC 2 cut(s) 107, 191
DdeI CTNAG 5 cut(s) 32, 87, 93, 130, 273
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 235
FaeI CATG 3 cut(s) 182, 246, 320
FaiI YATR 5 cut(s) 45, 180, 221, 244, 318
FatI CATG 3 cut(s) 178, 242, 316
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 194
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 302
Hin1II CATG 3 cut(s) 182, 246, 320
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 1 cut(s) 15
HphI GGTGA 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 284
Hpy188III TCNNGA 2 cut(s) 124, 317
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 4 cut(s) 4, 233, 242, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 5 cut(s) 32, 87, 93, 130, 273
Hsp92II CATG 3 cut(s) 182, 246, 320
KpnI GGTACC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 2 cut(s) 87, 179
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 3 cut(s) 160, 245, 263
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 1 cut(s) 73
MluCI AATT 4 cut(s) 21, 152, 198, 213
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 4 cut(s) 55, 217, 280, 326
Mph1103I ATGCAT 1 cut(s) 235
MseI TTAA 1 cut(s) 305
MspCI CTTAAG 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 1 cut(s) 258
NlaIII CATG 3 cut(s) 182, 246, 320
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 1 cut(s) 246
PagI TCATGA 1 cut(s) 316
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PspEI GGTNACC 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 108
RsaI GTAC 2 cut(s) 108, 192
RsaNI GTAC 2 cut(s) 107, 191
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 258
SchI GAGTC 1 cut(s) 24
SetI ASST 7 cut(s) 33, 38, 131, 142, 162, 252, 326
SfaNI GCATC 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 122, 304
SmoI CTYRAG 2 cut(s) 122, 304
Sse9I AATT 4 cut(s) 21, 152, 198, 213
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 194
TaqI TCGA 1 cut(s) 331
TasI AATT 4 cut(s) 21, 152, 198, 213
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 160
TspRI CASTG 1 cut(s) 91
Vha464I CTTAAG 1 cut(s) 304
XapI RAATTY 1 cut(s) 198
XceI RCATGY 1 cut(s) 246
XspI CTAG 1 cut(s) 194
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.