Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Reverse (-)

5600232 .. 5603222

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09741.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCAATAGAATTATTGAATGGCATGCAAACTTGCTTAATCAAAATTGGGATTCAAGAAGGTGGACTATCTTCATTATACGGAATCAAGGAGGAGGAATACAATCAACGATGGGAATGTATTCGCCACTCCCTAGAGATACTTGCTGAAACGGTGGAGTGTAATGTATTTCTTAACGATAACACTGTAGCTGCTGTGGGGAAAGACTCAGTAGAATTGGTCAAGCAGTTGGTGCAACATTGCATTCTGTATAATGTTTGTCCTGGGACCGCTGCCAGCAATTATAACCTTTTATCACAAGGTATAAGTATTGAAGACCCACATAAACAGCATGTGGAGATGGAAAATTCTGCGTCAGCGATGAGGATCATGCCTGAACTCTCCTCTTTCTGTACCTTCTTTTATGGAAAACAAGTGACTCAGTTGAGAAATGATTTCAAGAGTGTGGAAGCGTACTTAAAGAAGCATGGCTTTTCTTGCCAACTTTTCAGTGCGGTCGAGTACTGTTACATGATGGTCTCCAAAACTACAAACACTGGGGATCCAGATATTAGCAGCAAGATTTGGGATTTCCTCAAACTTCTGTCAACTGATGTTAAGCCTTTTAAGGCAATAGAAGCAGTGAATGGCGGTCTACATTATGACTTCATCCCCACGGGGTATAGATATGGTAAATTCTGTTCAAATGCTGGGATCACTGAGGAGGATTTTGCTAAAGTGGTGTGGCCACGTATTGAGCTCGGCATAAAGGAAATTTCATCTCAACTGAAGTTGGAGTACTTCATAAGTCTGGATTTTATTGCTGTCATGGGAGTTAGAGGAGTAGAGGTACTCAGACATTTTGTGTTACAGTGTTTTTGTTTGAGGATGCCTACGGCTATTTCGATGCGGGTTGGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

301

Amino Acids

33.92

Weight (kDa)

5.7

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	634
AciI	CCGC	4 cut(s)	270, 494, 630, 889
AclWI	GGATC	4 cut(s)	374, 536, 549, 701
AcoI	YGGCCR	1 cut(s)	725
AcsI	RAATTY	3 cut(s)	346, 674, 753
AcuI	CTGAAG	1 cut(s)	788
AfaI	GTAC	5 cut(s)	394, 455, 503, 779, 831
AgsI	TTSAA	5 cut(s)	19, 56, 314, 439, 684
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	2 cut(s)	191, 739
AluI	AGCT	2 cut(s)	191, 739
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	4 cut(s)	374, 536, 549, 701
AoxI	GGCC	1 cut(s)	725
ApeKI	GCWGC	3 cut(s)	191, 272, 555
ApoI	RAATTY	3 cut(s)	346, 674, 753
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	727
BamHI	GGATCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	741
BarI	GAAGNNNNNNTAC	2 cut(s)	761, 793
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	741
BbvI	GCAGC	3 cut(s)	178, 259, 567
BccI	CCATC	3 cut(s)	105, 334, 508
BceAI	ACGGC	1 cut(s)	891
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	3 cut(s)	192, 273, 556
BlsI	GCNGC	3 cut(s)	193, 274, 557
BmcAI	AGTACT	2 cut(s)	503, 779
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	2 cut(s)	268, 543
BmrFI	CCNGG	1 cut(s)	264
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	2 cut(s)	858, 876
BmuI	ACTGGG	1 cut(s)	546
BpiI	GAAGAC	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	731
BsaBI	GATNNNNATC	1 cut(s)	365
BsaI	GGTCTC	1 cut(s)	523
BsaJI	CCNNGG	2 cut(s)	263, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	813, 843
Bse1I	ACTGG	1 cut(s)	541
Bse3DI	GCAATG	1 cut(s)	238
Bse8I	GATNNNNATC	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	263, 654
BseGI	GGATG	2 cut(s)	648, 873
BseJI	GATNNNNATC	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	4 cut(s)	222, 434, 690, 847
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	4 cut(s)	107, 373, 716, 834
BseXI	GCAGC	3 cut(s)	178, 259, 567
BseYI	CCCAGC	1 cut(s)	689
Bsh1285I	CGRYCG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	727
BsiEI	CGRYCG	1 cut(s)	498
BsiHKAI	GWGCWC	1 cut(s)	741
BslFI	GGGAC	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	727
Bso31I	GGTCTC	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	3 cut(s)	366, 541, 693
BspACI	CCGC	4 cut(s)	270, 494, 630, 889
BspANI	GGCC	1 cut(s)	727
BspCNI	CTCAG	4 cut(s)	221, 433, 691, 846
BspLI	GGNNCC	2 cut(s)	268, 543
BspPI	GGATC	4 cut(s)	374, 536, 549, 701
BspTNI	GGTCTC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	541
BssECI	CCNNGG	2 cut(s)	263, 654
BssMI	GATC	3 cut(s)	366, 541, 693
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	4 cut(s)	154, 187, 506, 852
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstBAI	YACGTR	1 cut(s)	731
BstC8I	GCNNGC	2 cut(s)	26, 277
BstDEI	CTNAG	4 cut(s)	208, 420, 699, 833
BstDSI	CCRYGG	1 cut(s)	654
BstF5I	GGATG	2 cut(s)	648, 873
BstKTI	GATC	3 cut(s)	369, 544, 696
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	3 cut(s)	366, 541, 693
BstMCI	CGRYCG	1 cut(s)	498
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 477, 617
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	2 cut(s)	28, 335
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	178, 259, 567
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	727
BtgI	CCRYGG	1 cut(s)	654
BtgZI	GCGATG	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	648, 873
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	6 cut(s)	183, 496, 534, 627, 696, 857
Cac8I	GCNNGC	2 cut(s)	26, 277
Cfr13I	GGNCC	1 cut(s)	267
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	5 cut(s)	393, 454, 502, 778, 830
CviAII	CATG	6 cut(s)	25, 332, 370, 467, 511, 808
CviJI	RGCY	6 cut(s)	191, 471, 601, 727, 739, 878
CviKI_1	RGCY	6 cut(s)	191, 471, 601, 727, 739, 878
CviQI	GTAC	5 cut(s)	393, 454, 502, 778, 830
DdeI	CTNAG	4 cut(s)	208, 420, 699, 833
DpnI	GATC	3 cut(s)	368, 543, 695
DpnII	GATC	3 cut(s)	366, 541, 693
EaeI	YGGCCR	1 cut(s)	725
Ecl136II	GAGCTC	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	741
Eco31I	GGTCTC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	739
Eco57I	CTGAAG	1 cut(s)	788
EcoICRI	GAGCTC	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	741
FaeI	CATG	6 cut(s)	28, 335, 373, 470, 514, 811
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	6 cut(s)	24, 331, 369, 466, 510, 807
FauI	CCCGC	1 cut(s)	882
FblI	GTMKAC	1 cut(s)	634
Fnu4HI	GCNGC	3 cut(s)	192, 273, 556
FokI	GGATG	2 cut(s)	635, 880
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	3 cut(s)	192, 273, 556
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	3 cut(s)	192, 273, 556
GsaI	CCCAGC	1 cut(s)	693
HaeIII	GGCC	1 cut(s)	727
HgaI	GACGC	1 cut(s)	342
Hin1II	CATG	6 cut(s)	28, 335, 373, 470, 514, 811
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HinfI	GANTC	4 cut(s)	52, 84, 206, 418
Hpy166II	GTNNAC	3 cut(s)	65, 588, 635
Hpy188I	TCNGA	1 cut(s)	836
Hpy188III	TCNNGA	4 cut(s)	56, 439, 545, 791
Hpy8I	GTNNAC	3 cut(s)	65, 588, 635
HpyAV	CCTTC	2 cut(s)	53, 406
HpyCH4III	ACNGT	4 cut(s)	154, 187, 506, 852
HpyCH4IV	ACGT	1 cut(s)	730
HpyCH4V	TGCA	3 cut(s)	28, 235, 243
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 477, 617
HpyF3I	CTNAG	4 cut(s)	208, 420, 699, 833
HpySE526I	ACGT	1 cut(s)	730
Hsp92II	CATG	6 cut(s)	28, 335, 373, 470, 514, 811
Kzo9I	GATC	3 cut(s)	366, 541, 693
LpnPI	CCDG	8 cut(s)	249, 276, 289, 387, 522, 558, 675, 776
Lsp1109I	GCAGC	3 cut(s)	178, 259, 567
LweI	GCATC	2 cut(s)	858, 876
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	3 cut(s)	415, 506, 846
MalI	GATC	3 cut(s)	368, 543, 695
MboI	GATC	3 cut(s)	366, 541, 693
MboII	GAAGA	2 cut(s)	63, 326
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	741
MlsI	TGGCCA	1 cut(s)	727
MluCI	AATT	7 cut(s)	11, 45, 215, 280, 346, 674, 753
MluNI	TGGCCA	1 cut(s)	727
MlyI	GAGTC	2 cut(s)	200, 412
MmeI	TCCRAC	1 cut(s)	753
Mox20I	TGGCCA	1 cut(s)	727
MroXI	GAANNNNTTC	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	727
MseI	TTAA	5 cut(s)	38, 174, 458, 597, 606
Msp20I	TGGCCA	1 cut(s)	727
MspA1I	CMGCKG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	3 cut(s)	232, 477, 617
NdeII	GATC	3 cut(s)	366, 541, 693
NlaIII	CATG	6 cut(s)	28, 335, 373, 470, 514, 811
NlaIV	GGNNCC	2 cut(s)	268, 543
NmeAIII	GCCGAG	1 cut(s)	720
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	2 cut(s)	28, 335
PaeI	GCATGC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	881
PctI	GAATGC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	52, 84
PkrI	GCNGC	3 cut(s)	193, 274, 557
PleI	GAGTC	2 cut(s)	200, 412
PpsI	GAGTC	2 cut(s)	200, 412
Ppu21I	YACGTR	1 cut(s)	731
PsiI	TTATAA	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	268, 543
PspPI	GGNCC	1 cut(s)	267
PsrI	GAACNNNNNNTAC	2 cut(s)	664, 696
PsuI	RGATCY	1 cut(s)	541
RsaI	GTAC	5 cut(s)	394, 455, 503, 779, 831
RsaNI	GTAC	5 cut(s)	393, 454, 502, 778, 830
SacI	GAGCTC	1 cut(s)	741
SaqAI	TTAA	5 cut(s)	38, 174, 458, 597, 606
SatI	GCNGC	3 cut(s)	192, 273, 556
Sau3AI	GATC	3 cut(s)	366, 541, 693
Sau96I	GGNCC	1 cut(s)	267
ScaI	AGTACT	2 cut(s)	503, 779
SchI	GAGTC	2 cut(s)	200, 412
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	741
SetI	ASST	8 cut(s)	64, 193, 291, 304, 398, 733, 741, 831
SfaNI	GCATC	2 cut(s)	858, 876
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	267
SphI	GCATGC	1 cut(s)	28
Sse9I	AATT	7 cut(s)	11, 45, 215, 280, 346, 674, 753
SsiI	CCGC	4 cut(s)	270, 494, 630, 889
SspMI	CTAG	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	741
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	4 cut(s)	154, 187, 506, 852
TaiI	ACGT	1 cut(s)	733
TaqI	TCGA	2 cut(s)	498, 884
TasI	AATT	7 cut(s)	11, 45, 215, 280, 346, 674, 753
TatI	WGTACW	2 cut(s)	501, 777
TfiI	GAWTC	2 cut(s)	52, 84
Tru1I	TTAA	5 cut(s)	38, 174, 458, 597, 606
Tru9I	TTAA	5 cut(s)	38, 174, 458, 597, 606
TscAI	CASTG	6 cut(s)	190, 496, 541, 627, 703, 857
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	3 cut(s)	191, 272, 555
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	4 cut(s)	63, 637, 747, 772
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	6 cut(s)	190, 496, 541, 627, 703, 857
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	3 cut(s)	346, 674, 753
XceI	RCATGY	2 cut(s)	28, 335
XmiI	GTMKAC	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	134
ZrmI	AGTACT	2 cut(s)	503, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.