Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Forward (+)

22239253 .. 22242723

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31341.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAGCCAATCAGCGATGCCCTGGTGGATATGGCCGTGGACGACTTGTTAGTGAATTCAACGCCGATCCCGGAGGAACCACACCTCATCTCCCGAGTTCGTCACATCCCGGATAGTGTCCCCGGTACGCTTAGTAGGTGGGATCCTGGCCCTGCCTTGATGAACAAGAGCGGCGAGCTTGAGCTCATCTCTTTCACCGTGCCCTTCCCCGGAAACCGAGCAACAAAGTTGGAAGAAGTTTGGCCGGAGGTTGAGTGTTCCATGCAAGTCTCAACAACTAGATTTTTGAAGGATCCATATCTCCTTGACAGAGCCAGTCATCTTCTTGAACTGTTGTCCGAAAGTCTTGTTCCGCCTTATATGGCATTAGAAAAATTCCAAGGCAGCAAGCAACACGAAATTACCGAGATTGGAGATCAGCAGGATGGGCTTTGCACAAAATTTGGGATCAAGAAGGAGGAATATCTTAAACGATGGGAATGTCTCTTCCACTCCCTAAAGAACACTTTTACTGATGTGACTGCTGTGGAGAGTACAGTTGAAAGGATGTCTTGCGACTCTTGCCTCAAGTCAGTTGTGGGAAACTGCATTACTAAAAATTTGTGTCCTGCGACCTCTATTGGAAAATCGGAGGTTGATCTTGAGGATCCACATGCTAAGCACATAGAGATGGTGGAATCTGGCCCTTTGTTGATCAAAGATAGCATGCCTGAAGTCTTCTCTCTATACTCAATCCAAAACGAGATGTACCCAGATATCATTGACAAGGCGTGGCAGCTACTCGAACTCTTGTCAACAACTCATGCTCCAGTGTCTCTGGCAAAAGAAATAATGGATGGCAGTATGCAATCCTGCCTCATCAAAATTGGGAGTCAAGAAGGTGGGATTTGCTCAGAACATGGGATCAGTGAGGTGATATGTAGAAGAGTTATGGGAGAAAGAATCAGGAGAATTGAAGTTATGCTTGAATCATTGCCGAGAGAAGTGTTCCTGATGGACCTAGGGAAGCAAAGCAAAGCAGCTGATCCACGAAGCCTAGTCCATGAAAGGAGAGGTCCAAACCAAGTCCAATATGGAGAAGAAGATCTAAATTTGACAGAATATCAAGGAATATCCCTGACTAATTTCGGGAAAATTCCTGTGCACGGCTCTCAACTTCAACGGACTCTCCAGGACAGCTCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

396

Amino Acids

44.27

Weight (kDa)

4.98

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	171
AciI	CCGC	2 cut(s)	171, 353
AcoI	YGGCCR	2 cut(s)	33, 242
AcsI	RAATTY	6 cut(s)	55, 374, 440, 598, 1090, 1134
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	3 cut(s)	127, 535, 749
AfiI	CCNNNNNNNGG	2 cut(s)	209, 1145
AgsI	TTSAA	7 cut(s)	60, 289, 329, 542, 956, 968, 1160
AjnI	CCWGG	3 cut(s)	21, 145, 1170
AluBI	AGCT	5 cut(s)	178, 184, 778, 1022, 1179
AluI	AGCT	5 cut(s)	178, 184, 778, 1022, 1179
Alw21I	GWGCWC	2 cut(s)	186, 1146
Alw26I	GTCTC	3 cut(s)	274, 488, 819
Alw44I	GTGCAC	1 cut(s)	1142
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	4 cut(s)	33, 148, 242, 682
ApaLI	GTGCAC	1 cut(s)	1142
ApeKI	GCWGC	3 cut(s)	384, 775, 1019
ApoI	RAATTY	6 cut(s)	55, 374, 440, 598, 1090, 1134
AspA2I	CCTAGG	1 cut(s)	1000
AspS9I	GGNCC	4 cut(s)	149, 683, 997, 1055
AsuC2I	CCSGG	4 cut(s)	71, 110, 123, 210
AsuHPI	GGTGA	2 cut(s)	187, 925
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	2 cut(s)	997, 1055
AvrII	CCTAGG	1 cut(s)	1000
BaeGI	GKGCMC	2 cut(s)	204, 1146
BamHI	GGATCC	3 cut(s)	142, 292, 646
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	709
Bbv12I	GWGCWC	2 cut(s)	186, 1146
BbvI	GCAGC	3 cut(s)	396, 787, 1031
BccI	CCATC	5 cut(s)	419, 468, 664, 830, 988
BceAI	ACGGC	2 cut(s)	20, 1162
BciT130I	CCWGG	3 cut(s)	23, 147, 1172
BclI	TGATCA	1 cut(s)	693
BcnI	CCSGG	4 cut(s)	71, 110, 123, 210
BcoDI	GTCTC	3 cut(s)	274, 488, 819
BfaI	CTAG	3 cut(s)	279, 1001, 1037
BglII	AGATCT	1 cut(s)	1084
BisI	GCNGC	4 cut(s)	172, 385, 776, 1020
BlnI	CCTAGG	1 cut(s)	1000
BlpI	GCTNAGC	1 cut(s)	657
BlsI	GCNGC	4 cut(s)	173, 386, 777, 1021
Bme1390I	CCNGG	7 cut(s)	23, 71, 110, 123, 147, 210, 1172
Bme18I	GGWCC	2 cut(s)	997, 1055
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	4 cut(s)	149, 683, 997, 1055
BmiI	GGNNCC	5 cut(s)	6, 78, 144, 294, 648
BmrFI	CCNGG	7 cut(s)	23, 71, 110, 123, 147, 210, 1172
BmsI	GCATC	1 cut(s)	7
BpiI	GAAGAC	1 cut(s)	709
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpmI	CTGGAG	2 cut(s)	792, 1154
Bpu1102I	GCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	3 cut(s)	200, 551, 662
BpuMI	CCSGG	4 cut(s)	71, 110, 123, 210
BsaBI	GATNNNNATC	1 cut(s)	297
BsaJI	CCNNGG	6 cut(s)	21, 36, 121, 208, 379, 1000
BsaXI	ACNNNNNCTCC	8 cut(s)	74, 104, 239, 269, 790, 820, 1152, 1182
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 1145
Bse1I	ACTGG	2 cut(s)	315, 809
Bse3DI	GCAATG	1 cut(s)	971
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	3 cut(s)	23, 147, 1172
BseDI	CCNNGG	6 cut(s)	21, 36, 121, 208, 379, 1000
BseGI	GGATG	4 cut(s)	105, 430, 552, 841
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	209, 1145
BseMI	GCAATG	1 cut(s)	971
BseMII	CTCAG	1 cut(s)	906
BseNI	ACTGG	2 cut(s)	315, 809
BseSI	GKGCMC	2 cut(s)	204, 1146
BseXI	GCAGC	3 cut(s)	396, 787, 1031
BshFI	GGCC	4 cut(s)	35, 150, 244, 684
BsiHKAI	GWGCWC	2 cut(s)	186, 1146
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	5 cut(s)	71, 110, 123, 210, 245
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	209, 1145
BsmAI	GTCTC	3 cut(s)	274, 488, 819
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	4 cut(s)	35, 150, 244, 684
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	186, 204, 1146
Bsp1720I	GCTNAGC	1 cut(s)	657
BspACI	CCGC	2 cut(s)	171, 353
BspANI	GGCC	4 cut(s)	35, 150, 244, 684
BspCNI	CTCAG	1 cut(s)	905
BspLI	GGNNCC	5 cut(s)	6, 78, 144, 294, 648
BsrBI	CCGCTC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	971
BsrI	ACTGG	2 cut(s)	315, 809
BssECI	CCNNGG	6 cut(s)	21, 36, 121, 208, 379, 1000
BssT1I	CCWWGG	2 cut(s)	379, 1000
Bst2UI	CCWGG	3 cut(s)	23, 147, 1172
Bst4CI	ACNGT	3 cut(s)	199, 333, 538
Bst6I	CTCTTC	2 cut(s)	491, 919
BstC8I	GCNNGC	3 cut(s)	176, 389, 707
BstDEI	CTNAG	3 cut(s)	131, 657, 892
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	4 cut(s)	105, 430, 552, 841
BstMAI	GTCTC	3 cut(s)	274, 488, 819
BstMWI	GCNNNNNNNGC	2 cut(s)	427, 561
BstNI	CCWGG	3 cut(s)	23, 147, 1172
BstNSI	RCATGY	2 cut(s)	656, 709
BstSCI	CCNGG	7 cut(s)	21, 69, 108, 121, 145, 208, 1170
BstSLI	GKGCMC	2 cut(s)	204, 1146
BstV1I	GCAGC	3 cut(s)	396, 787, 1031
BstV2I	GAAGAC	1 cut(s)	709
BstX2I	RGATCY	4 cut(s)	142, 292, 646, 1084
BstYI	RGATCY	4 cut(s)	142, 292, 646, 1084
BsuRI	GGCC	4 cut(s)	35, 150, 244, 684
BtgI	CCRYGG	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	4 cut(s)	105, 430, 552, 841
BtsIMutI	CAGTG	2 cut(s)	816, 913
Cac8I	GCNNGC	3 cut(s)	176, 389, 707
Cfr13I	GGNCC	4 cut(s)	149, 683, 997, 1055
Csp6I	GTAC	3 cut(s)	126, 534, 748
CviAII	CATG	6 cut(s)	262, 653, 706, 803, 899, 1043
CviQI	GTAC	3 cut(s)	126, 534, 748
DdeI	CTNAG	3 cut(s)	131, 657, 892
EaeI	YGGCCR	2 cut(s)	33, 242
Eam1104I	CTCTTC	2 cut(s)	491, 919
EarI	CTCTTC	2 cut(s)	491, 919
EciI	GGCGGA	1 cut(s)	342
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	379, 1000
Eco24I	GRGCYC	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	757
Eco47I	GGWCC	2 cut(s)	997, 1055
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	732
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	3 cut(s)	21, 145, 1170
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	2 cut(s)	379, 1000
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	2 cut(s)	379, 1000
FaeI	CATG	6 cut(s)	265, 656, 709, 806, 902, 1046
FalI	AAGNNNNNCTT	4 cut(s)	535, 567, 948, 980
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	6 cut(s)	261, 652, 705, 802, 898, 1042
FbaI	TGATCA	1 cut(s)	693
Fnu4HI	GCNGC	4 cut(s)	172, 385, 776, 1020
FokI	GGATG	4 cut(s)	92, 437, 559, 848
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	4 cut(s)	172, 385, 776, 1020
FspBI	CTAG	3 cut(s)	279, 1001, 1037
GluI	GCNGC	4 cut(s)	172, 385, 776, 1020
GsuI	CTGGAG	2 cut(s)	792, 1154
HaeIII	GGCC	4 cut(s)	35, 150, 244, 684
HapII	CCGG	5 cut(s)	71, 110, 123, 210, 245
Hin1II	CATG	6 cut(s)	265, 656, 709, 806, 902, 1046
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HinfI	GANTC	6 cut(s)	557, 677, 871, 942, 968, 1165
HpaII	CCGG	5 cut(s)	71, 110, 123, 210, 245
HphI	GGTGA	2 cut(s)	187, 925
Hpy166II	GTNNAC	3 cut(s)	40, 795, 1144
Hpy188I	TCNGA	3 cut(s)	340, 631, 895
Hpy188III	TCNNGA	8 cut(s)	93, 326, 451, 641, 875, 946, 991, 1129
Hpy8I	GTNNAC	3 cut(s)	40, 795, 1144
HpyAV	CCTTC	4 cut(s)	214, 283, 448, 872
HpyCH4III	ACNGT	3 cut(s)	199, 333, 538
HpyCH4V	TGCA	5 cut(s)	265, 435, 588, 847, 1144
HpyF10VI	GCNNNNNNNGC	2 cut(s)	427, 561
HpyF3I	CTNAG	3 cut(s)	131, 657, 892
Hsp92II	CATG	6 cut(s)	265, 656, 709, 806, 902, 1046
Ksp22I	TGATCA	1 cut(s)	693
LmnI	GCTCC	2 cut(s)	4, 811
Lsp1109I	GCAGC	3 cut(s)	396, 787, 1031
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	3 cut(s)	279, 1001, 1037
MaeIII	GTNAC	2 cut(s)	101, 517
MbiI	CCGCTC	1 cut(s)	171
MboII	GAAGA	7 cut(s)	245, 314, 478, 709, 936, 1091, 1094
MflI	RGATCY	4 cut(s)	142, 292, 646, 1084
MhlI	GDGCHC	3 cut(s)	186, 204, 1146
MlyI	GAGTC	3 cut(s)	551, 880, 1159
MmeI	TCCRAC	1 cut(s)	210
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	1022
MspI	CCGG	5 cut(s)	71, 110, 123, 210, 245
MspR9I	CCNGG	7 cut(s)	23, 71, 110, 123, 147, 210, 1172
MvaI	CCWGG	3 cut(s)	23, 147, 1172
MwoI	GCNNNNNNNGC	2 cut(s)	427, 561
NciI	CCSGG	4 cut(s)	71, 110, 123, 210
NlaIII	CATG	6 cut(s)	265, 656, 709, 806, 902, 1046
NlaIV	GGNNCC	5 cut(s)	6, 78, 144, 294, 648
NmeAIII	GCCGAG	1 cut(s)	1002
NmuCI	GTSAC	2 cut(s)	101, 517
NspI	RCATGY	2 cut(s)	656, 709
PaeI	GCATGC	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PfeI	GAWTC	3 cut(s)	677, 942, 968
PfoI	TCCNGGA	3 cut(s)	69, 108, 1170
PkrI	GCNGC	4 cut(s)	173, 386, 777, 1021
PleI	GAGTC	3 cut(s)	551, 879, 1159
PpsI	GAGTC	3 cut(s)	551, 879, 1159
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	3 cut(s)	21, 145, 1170
PspGI	CCWGG	3 cut(s)	21, 145, 1170
PspN4I	GGNNCC	5 cut(s)	6, 78, 144, 294, 648
PspPI	GGNCC	4 cut(s)	149, 683, 997, 1055
PsuI	RGATCY	4 cut(s)	142, 292, 646, 1084
PvuII	CAGCTG	1 cut(s)	1022
RsaI	GTAC	3 cut(s)	127, 535, 749
RsaNI	GTAC	3 cut(s)	126, 534, 748
RseI	CAYNNNNRTG	1 cut(s)	668
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	4 cut(s)	172, 385, 776, 1020
Sau96I	GGNCC	4 cut(s)	149, 683, 997, 1055
SchI	GAGTC	3 cut(s)	551, 880, 1159
ScrFI	CCNGG	7 cut(s)	23, 71, 110, 123, 147, 210, 1172
SduI	GDGCHC	3 cut(s)	186, 204, 1146
SfaNI	GCATC	1 cut(s)	7
SinI	GGWCC	2 cut(s)	997, 1055
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	3 cut(s)	179, 566, 641
SmoI	CTYRAG	3 cut(s)	179, 566, 641
SphI	GCATGC	1 cut(s)	709
SsiI	CCGC	2 cut(s)	171, 353
SspMI	CTAG	3 cut(s)	279, 1001, 1037
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	7 cut(s)	21, 69, 108, 121, 145, 208, 1170
StyI	CCWWGG	2 cut(s)	379, 1000
TaaI	ACNGT	3 cut(s)	199, 333, 538
TaqI	TCGA	1 cut(s)	783
TatI	WGTACW	1 cut(s)	533
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	3 cut(s)	677, 942, 968
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	2 cut(s)	816, 913
TseFI	GTSAC	2 cut(s)	101, 517
TseI	GCWGC	3 cut(s)	384, 775, 1019
Tsp45I	GTSAC	2 cut(s)	101, 517
TspDTI	ATGAA	2 cut(s)	176, 1059
TspGWI	ACGGA	1 cut(s)	1177
TspRI	CASTG	2 cut(s)	816, 913
VneI	GTGCAC	1 cut(s)	1142
VpaK11BI	GGWCC	2 cut(s)	997, 1055
XapI	RAATTY	6 cut(s)	55, 374, 440, 598, 1090, 1134
XceI	RCATGY	2 cut(s)	656, 709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1070
XmaJI	CCTAGG	1 cut(s)	1000
XspI	CTAG	3 cut(s)	279, 1001, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.