Rorug06G0490800

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001762
Physical Location & Seq
Reverse (-)
60887547 .. 60890748
3202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0490800.1

Sequence Viewer

Length: 1191 bp
ATGGGTTCCACTTCCACCCTCGCACTGGCTTTTCCGTCCCCAATCGCAACTACTCTCCGCACCTCCAAAAACCCCCACTCCTCGTCTTACAAGCTCCTCCGTCTCTGTTTGATCACCACAAGGCTCCAAGCCATTCAGTCTCATGCCTCTGGTGGCTATAGCCAAGCGTCTGAATTGCCTGATATAAGTTGGGACAATGTTGGCTTCGACAACCCTATGACTACCGATTATATGTTTACTGTGAAGTGTTCTGAAGATGGGAACTTTTCCGATGGTGGGTTACAGAGTTTTGGTAAAATTGAGTTGAACCCAGCTGCCTGTGTTTTGAACTATGGTCAGGGAGTAATTGAAGAATTGAAAGCGTACAAGAAGCTAGATAATTCTATAGTACTGTTTCGTCCAGAGGAAAATGGATTGAGGATGAGAATGGGAGCAGAGCGCATGTGTATGCCTGCACCAACTGTTGAGCAGTTTGTGGAAGCTGTGAAACTTACTGTATTGGCAAATAGACGTTGGGTTCCGCCACCAAATAAAGGCTTTCTACATATCAAACCACTACTTATGGGGAATGGACCTGTTCTTAGTCTTACACCGGCTCCAGAATTCACCTTTCTCATATATGCTTCTTCGATGGGGAACACCTTTAAGGGGGGACTGGAACCAATCAACTTAGTGGTTGAAAATGAAATCCATCGTGCAGTTCGTGGTGGAGCTGGAACTGTTAATGCCATAGGGAATTATGCTATGGTTTTGAAGACACAGGTGGAGGCAAAAGCAGATGGTTTCTCTGATGTTTTGTACCTTGATTCTGTTCACAAAAGATATGTGGAACAGACTTCCACTGCTAACATCTTTCTAGTGAAGGACAAAATTATTTCCACTCCAGCACTGGAAGGGACAATTTTGCCTGGCGTTACACGCAAAAGTATAATTGAAATTGCTTGCAGCCAAGGGTACCAGGTTGAGGAGCGCCCTGTGTCGATTGAGGAATTGCTAGAAGCTGATGAAGTGTTCTGTACTGGATATGCTGTCTGTTTATCACCTATAGGCAGCATAACTTACCTGGGAAAAAGGGTGTCTTACCAAGAAACTGGACTTGGTGGAGTTTCTGAGCAACTGTATCAGGCTCTTTCAAATATACAGATGGGTCTTGCAGAAGAAAATAGGGGTTGGATAGTAACCTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

396

Amino Acids

43.19

Weight (kDa)

5.7

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 115 - 352 1.9e-26 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 954
AccB1I GGYRCC 1 cut(s) 954
AciI CCGC 2 cut(s) 58, 521
AcsI RAATTY 1 cut(s) 602
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 5 cut(s) 365, 390, 800, 956, 1018
AfiI CCNNNNNNNGG 5 cut(s) 25, 276, 533, 648, 964
AgsI TTSAA 9 cut(s) 307, 328, 350, 358, 680, 754, 935, 1134, 1186
AjnI CCWGG 3 cut(s) 907, 957, 1062
AjuI GAANNNNNNNTTGG 2 cut(s) 1080, 1112
AluBI AGCT 6 cut(s) 94, 314, 373, 482, 713, 1001
AluI AGCT 6 cut(s) 94, 314, 373, 482, 713, 1001
Alw26I GTCTC 2 cut(s) 107, 144
ApeKI GCWGC 3 cut(s) 314, 945, 1050
ApoI RAATTY 1 cut(s) 602
Asp718I GGTACC 1 cut(s) 954
AspLEI GCGC 2 cut(s) 441, 972
AspS9I GGNCC 1 cut(s) 572
AsuHPI GGTGA 3 cut(s) 106, 598, 1032
AvaII GGWCC 1 cut(s) 572
BanI GGYRCC 1 cut(s) 954
BbsI GAAGAC 1 cut(s) 761
BbvI GCAGC 3 cut(s) 301, 957, 1062
BccI CCATC 6 cut(s) 251, 266, 625, 699, 773, 1138
BciT130I CCWGG 3 cut(s) 909, 959, 1064
BclI TGATCA 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 107, 144
BfaI CTAG 3 cut(s) 374, 857, 995
BfmI CTRYAG 3 cut(s) 157, 384, 1044
BfoI RGCGCY 1 cut(s) 973
BisI GCNGC 3 cut(s) 315, 946, 1051
BlsI GCNGC 3 cut(s) 316, 947, 1052
BmcAI AGTACT 1 cut(s) 390
Bme1390I CCNGG 3 cut(s) 909, 959, 1064
Bme18I GGWCC 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 572
BmiI GGNNCC 6 cut(s) 7, 125, 519, 597, 660, 956
BmrFI CCNGG 3 cut(s) 909, 959, 1064
BpiI GAAGAC 1 cut(s) 761
BpmI CTGGAG 2 cut(s) 582, 867
BsaJI CCNNGG 2 cut(s) 949, 1063
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 580, 610
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 276, 533, 648, 964
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 5 cut(s) 30, 660, 894, 1024, 1096
BseBI CCWGG 3 cut(s) 909, 959, 1064
BseDI CCNNGG 2 cut(s) 949, 1063
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 5 cut(s) 25, 276, 533, 648, 964
BseMII CTCAG 1 cut(s) 1101
BseNI ACTGG 5 cut(s) 30, 660, 894, 1024, 1096
BseRI GAGGAG 3 cut(s) 70, 86, 980
BseXI GCAGC 3 cut(s) 301, 957, 1062
BseYI CCCAGC 1 cut(s) 310
BsgI GTGCAG 2 cut(s) 438, 717
BshNI GGYRCC 1 cut(s) 954
BsiSI CCGG 1 cut(s) 593
BslFI GGGAC 4 cut(s) 22, 206, 666, 910
BslI CCNNNNNNNGG 5 cut(s) 25, 276, 533, 648, 964
BsmAI GTCTC 2 cut(s) 107, 144
BsmBI CGTCTC 1 cut(s) 107
BsmFI GGGAC 4 cut(s) 22, 206, 666, 910
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 2 cut(s) 58, 521
BspCNI CTCAG 1 cut(s) 1102
BspLI GGNNCC 6 cut(s) 7, 125, 519, 597, 660, 956
BspT107I GGYRCC 1 cut(s) 954
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 5 cut(s) 30, 660, 894, 1024, 1096
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 2 cut(s) 949, 1063
BssMI GATC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 949
Bst2UI CCWGG 3 cut(s) 909, 959, 1064
Bst4CI ACNGT 6 cut(s) 241, 393, 463, 496, 721, 1119
BstC8I GCNNGC 2 cut(s) 453, 943
BstDEI CTNAG 3 cut(s) 581, 670, 1110
BstF5I GGATG 1 cut(s) 426
BstH2I RGCGCY 1 cut(s) 973
BstHHI GCGC 2 cut(s) 441, 972
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 2 cut(s) 107, 144
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 918
BstNI CCWGG 3 cut(s) 909, 959, 1064
BstNSI RCATGY 1 cut(s) 445
BstSCI CCNGG 3 cut(s) 907, 957, 1062
BstSFI CTRYAG 3 cut(s) 157, 384, 1044
BstV1I GCAGC 3 cut(s) 301, 957, 1062
BstV2I GAAGAC 1 cut(s) 761
BstXI CCANNNNNNTGG 1 cut(s) 1091
BtsCI GGATG 1 cut(s) 426
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 3 cut(s) 23, 840, 887
Cac8I GCNNGC 2 cut(s) 453, 943
CfoI GCGC 2 cut(s) 441, 972
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 572
CseI GACGC 1 cut(s) 156
CsiI ACCWGGT 1 cut(s) 957
Csp6I GTAC 5 cut(s) 364, 389, 799, 955, 1017
CviAII CATG 2 cut(s) 143, 442
CviQI GTAC 5 cut(s) 364, 389, 799, 955, 1017
DdeI CTNAG 3 cut(s) 581, 670, 1110
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 949
Eco47I GGWCC 1 cut(s) 572
Eco57I CTGAAG 1 cut(s) 273
EcoRI GAATTC 1 cut(s) 602
EcoRII CCWGG 3 cut(s) 907, 957, 1062
EcoT14I CCWWGG 1 cut(s) 949
ErhI CCWWGG 1 cut(s) 949
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 2 cut(s) 146, 445
FalI AAGNNNNNCTT 2 cut(s) 1063, 1095
FaqI GGGAC 4 cut(s) 22, 206, 666, 910
FatI CATG 2 cut(s) 142, 441
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 315, 946, 1051
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 3 cut(s) 315, 946, 1051
FspBI CTAG 3 cut(s) 374, 857, 995
GlaI GCGC 2 cut(s) 440, 971
GluI GCNGC 3 cut(s) 315, 946, 1051
GsaI CCCAGC 1 cut(s) 314
GsuI CTGGAG 2 cut(s) 582, 867
HaeII RGCGCY 1 cut(s) 973
HapII CCGG 1 cut(s) 593
HgaI GACGC 1 cut(s) 156
HhaI GCGC 2 cut(s) 441, 972
Hin1II CATG 2 cut(s) 146, 445
Hin6I GCGC 2 cut(s) 439, 970
HinP1I GCGC 2 cut(s) 439, 970
HinfI GANTC 1 cut(s) 806
HpaII CCGG 1 cut(s) 593
HphI GGTGA 3 cut(s) 106, 598, 1032
Hpy166II GTNNAC 2 cut(s) 237, 814
Hpy188I TCNGA 5 cut(s) 172, 253, 271, 790, 1111
Hpy188III TCNNGA 2 cut(s) 401, 599
Hpy8I GTNNAC 2 cut(s) 237, 814
HpyAV CCTTC 2 cut(s) 856, 887
HpyCH4III ACNGT 6 cut(s) 241, 393, 463, 496, 721, 1119
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 4 cut(s) 455, 698, 945, 1154
HpyF10VI GCNNNNNNNGC 1 cut(s) 918
HpyF3I CTNAG 3 cut(s) 581, 670, 1110
HpySE526I ACGT 1 cut(s) 511
Hsp92II CATG 2 cut(s) 146, 445
HspAI GCGC 2 cut(s) 439, 970
KpnI GGTACC 1 cut(s) 958
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 6 cut(s) 99, 129, 431, 601, 710, 967
Lsp1109I GCAGC 3 cut(s) 301, 957, 1062
MabI ACCWGGT 1 cut(s) 957
MaeI CTAG 3 cut(s) 374, 857, 995
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 3 cut(s) 279, 913, 1177
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 5 cut(s) 266, 362, 618, 766, 1169
MmeI TCCRAC 1 cut(s) 1151
MseI TTAA 2 cut(s) 645, 723
MslI CAYNNNNRTG 1 cut(s) 446
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 3 cut(s) 909, 959, 1064
MvaI CCWGG 3 cut(s) 909, 959, 1064
MwoI GCNNNNNNNGC 1 cut(s) 918
NdeII GATC 1 cut(s) 111
NlaIII CATG 2 cut(s) 146, 445
NlaIV GGNNCC 6 cut(s) 7, 125, 519, 597, 660, 956
NspI RCATGY 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 700
PfeI GAWTC 1 cut(s) 806
PkrI GCNGC 3 cut(s) 316, 947, 1052
Psp6I CCWGG 3 cut(s) 907, 957, 1062
PspFI CCCAGC 1 cut(s) 310
PspGI CCWGG 3 cut(s) 907, 957, 1062
PspN4I GGNNCC 6 cut(s) 7, 125, 519, 597, 660, 956
PspPI GGNCC 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 5 cut(s) 365, 390, 800, 956, 1018
RsaNI GTAC 5 cut(s) 364, 389, 799, 955, 1017
RseI CAYNNNNRTG 1 cut(s) 446
SaqAI TTAA 2 cut(s) 645, 723
SatI GCNGC 3 cut(s) 315, 946, 1051
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 572
ScaI AGTACT 1 cut(s) 390
ScrFI CCNGG 3 cut(s) 909, 959, 1064
SexAI ACCWGGT 1 cut(s) 957
SfcI CTRYAG 3 cut(s) 157, 384, 1044
SinI GGWCC 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 446
SsiI CCGC 2 cut(s) 58, 521
SspMI CTAG 3 cut(s) 374, 857, 995
StyD4I CCNGG 3 cut(s) 907, 957, 1062
StyI CCWWGG 1 cut(s) 949
TaaI ACNGT 6 cut(s) 241, 393, 463, 496, 721, 1119
TaiI ACGT 1 cut(s) 514
TaqI TCGA 3 cut(s) 207, 629, 980
TatI WGTACW 2 cut(s) 388, 1016
TfiI GAWTC 1 cut(s) 806
Tru1I TTAA 2 cut(s) 645, 723
Tru9I TTAA 2 cut(s) 645, 723
TscAI CASTG 3 cut(s) 30, 847, 894
TseI GCWGC 3 cut(s) 314, 945, 1050
TspDTI ATGAA 2 cut(s) 699, 1020
TspGWI ACGGA 2 cut(s) 24, 89
TspRI CASTG 3 cut(s) 30, 847, 894
VpaK11BI GGWCC 1 cut(s) 572
XapI RAATTY 1 cut(s) 602
XceI RCATGY 1 cut(s) 445
XcmI CCANNNNNNNNNTGG 2 cut(s) 22, 886
XspI CTAG 3 cut(s) 374, 857, 995
ZrmI AGTACT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.