Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021207.1

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Forward (+)

22384 .. 25887

Gene Structure 3504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021207.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgatgaccatggtcatgcctgaattcacctctttctgtatgttctttgatggagaacaagcaactctgttggaaaaagattggaagtgtgtggaagcgtgcttaaagaagcatggcttttcttgcaaactgattgttgcggtcgagtgttacatgatagtctccaaaactacaaacgctggggatccagatatcactgacaagatttgggatttccttaaacttttgtcaattgatgttgaaccttctaagacaacagaagtactgaatggccgtctgcattttgacttcatcccgacaggtcatctcatgccaacagggagggactgccacccagatgacgcattggaagggactgccaaccggaataggaggcggtggatagaagggactgcccacaggaccgtggaggaaggggctaaaaagcccagacggtggagtagtctaacatggccggaaaatcacgaattggccggaaaaccaataacgagctcgcaggaaatcaagcttgctgcgccgaattctgccattatcatcgtgcatcgtggccacagggaggaagaggaaggtgagacgtccataggagcccggttgcacggccgggggatcactgaggagaaatttgctaaagtggtgtggccacatattgagcgtggcttagaggaaatttcaactcaactgaactgtgagtacattattagtcagaactttattaccgtcttgggacttgaagaactaggggtcttcagaaggtttgtggaacagtgtttttgtttcagacctcgtccaacttgtgtcatgcgggctaggataaaaggcaggttcgtgccaccttttggttgtgaggctcgtgcacttttctttggcgaggatgtggccatgcttgaggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

297

Amino Acids

33.82

Weight (kDa)

6.1

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	810
AccB7I	CCANNNNNTGG	2 cut(s)	435, 836
AciI	CCGC	3 cut(s)	140, 376, 802
AclWI	GGATC	3 cut(s)	179, 192, 614
AcoI	YGGCCR	7 cut(s)	271, 452, 471, 547, 598, 638, 876
AcsI	RAATTY	4 cut(s)	23, 520, 620, 666
AcuI	CTGAAG	1 cut(s)	730
AcyI	GRCGYC	1 cut(s)	575
AfaI	GTAC	2 cut(s)	264, 692
AfiI	CCNNNNNNNGG	3 cut(s)	435, 556, 836
AgsI	TTSAA	3 cut(s)	242, 672, 731
AluBI	AGCT	2 cut(s)	492, 508
AluI	AGCT	2 cut(s)	492, 508
Alw21I	GWGCWC	2 cut(s)	494, 856
Alw26I	GTCTC	2 cut(s)	166, 566
Alw44I	GTGCAC	1 cut(s)	852
AlwI	GGATC	3 cut(s)	179, 192, 614
AoxI	GGCC	8 cut(s)	271, 452, 471, 547, 598, 638, 876, 888
ApaLI	GTGCAC	1 cut(s)	852
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	4 cut(s)	23, 520, 620, 666
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	1 cut(s)	402
AsuC2I	CCSGG	2 cut(s)	589, 602
AsuHPI	GGTGA	2 cut(s)	19, 581
AvaII	GGWCC	1 cut(s)	402
BaeGI	GKGCMC	1 cut(s)	856
BalI	TGGCCA	3 cut(s)	549, 640, 878
BamHI	GGATCC	1 cut(s)	184
BanII	GRGCYC	2 cut(s)	494, 589
BauI	CACGAG	1 cut(s)	849
BbsI	GAAGAC	1 cut(s)	736
Bbv12I	GWGCWC	2 cut(s)	494, 856
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	2 cut(s)	258, 613
BcnI	CCSGG	2 cut(s)	589, 602
BcoDI	GTCTC	2 cut(s)	166, 566
BfaI	CTAG	3 cut(s)	737, 807, 892
BfuAI	ACCTGC	1 cut(s)	810
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
BmcAI	AGTACT	1 cut(s)	264
Bme1390I	CCNGG	2 cut(s)	589, 602
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	1 cut(s)	402
BmiI	GGNNCC	2 cut(s)	186, 586
BmrFI	CCNGG	2 cut(s)	589, 602
BmsI	GCATC	1 cut(s)	550
BoxI	GACNNNNGTC	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	736
BpuMI	CCSGG	2 cut(s)	589, 602
BsaHI	GRCGYC	1 cut(s)	575
BsaJI	CCNNGG	3 cut(s)	9, 405, 601
BsaWI	WCCGGW	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	3 cut(s)	435, 556, 836
BseDI	CCNNGG	3 cut(s)	9, 405, 601
BseGI	GGATG	2 cut(s)	291, 877
BseLI	CCNNNNNNNGG	3 cut(s)	435, 556, 836
BseMII	CTCAG	1 cut(s)	603
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	1 cut(s)	856
BseX3I	CGGCCG	1 cut(s)	598
BseXI	GCAGC	1 cut(s)	499
BseYI	CCCAGC	1 cut(s)	179
Bsh1285I	CGRYCG	2 cut(s)	144, 601
BshFI	GGCC	8 cut(s)	273, 454, 473, 549, 600, 640, 878, 890
BsiEI	CGRYCG	2 cut(s)	144, 601
BsiHKAI	GWGCWC	2 cut(s)	494, 856
BsiSI	CCGG	5 cut(s)	364, 455, 474, 589, 601
BslFI	GGGAC	4 cut(s)	338, 367, 403, 738
BslI	CCNNNNNNNGG	3 cut(s)	435, 556, 836
BsmAI	GTCTC	2 cut(s)	166, 566
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	4 cut(s)	338, 367, 403, 738
BsnI	GGCC	8 cut(s)	273, 454, 473, 549, 600, 640, 878, 890
Bsp1286I	GDGCHC	3 cut(s)	494, 589, 856
Bsp143I	GATC	2 cut(s)	184, 606
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	140, 376, 802
BspANI	GGCC	8 cut(s)	273, 454, 473, 549, 600, 640, 878, 890
BspCNI	CTCAG	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	186, 586
BspMI	ACCTGC	1 cut(s)	810
BspPI	GGATC	3 cut(s)	179, 192, 614
BssECI	CCNNGG	3 cut(s)	9, 405, 601
BssMI	GATC	2 cut(s)	184, 606
BssNI	GRCGYC	1 cut(s)	575
BssSI	CACGAG	1 cut(s)	849
BssT1I	CCWWGG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	849
Bst4CI	ACNGT	5 cut(s)	406, 435, 686, 718, 765
Bst6I	CTCTTC	1 cut(s)	555
BstACI	GRCGYC	1 cut(s)	575
BstC8I	GCNNGC	4 cut(s)	100, 494, 510, 804
BstDEI	CTNAG	3 cut(s)	249, 612, 658
BstDSI	CCRYGG	2 cut(s)	9, 405
BstF5I	GGATG	2 cut(s)	291, 877
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	2 cut(s)	187, 609
BstMAI	GTCTC	2 cut(s)	166, 566
BstMBI	GATC	2 cut(s)	184, 606
BstMCI	CGRYCG	2 cut(s)	144, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 514
BstPAI	GACNNNNGTC	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	587, 600
BstSLI	GKGCMC	1 cut(s)	856
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	1 cut(s)	736
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BstZI	CGGCCG	1 cut(s)	598
BsuRI	GGCC	8 cut(s)	273, 454, 473, 549, 600, 640, 878, 890
BtgI	CCRYGG	2 cut(s)	9, 405
BtsCI	GGATG	2 cut(s)	291, 877
BtsIMutI	CAGTG	3 cut(s)	195, 609, 770
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	4 cut(s)	100, 494, 510, 804
CfoI	GCGC	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	402
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	263, 691
CviAII	CATG	8 cut(s)	10, 16, 113, 154, 310, 450, 799, 880
CviQI	GTAC	2 cut(s)	263, 691
DdeI	CTNAG	3 cut(s)	249, 612, 658
DpnI	GATC	2 cut(s)	186, 608
DpnII	GATC	2 cut(s)	184, 606
EaeI	YGGCCR	7 cut(s)	271, 452, 471, 547, 598, 638, 876
EagI	CGGCCG	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	492
EclXI	CGGCCG	1 cut(s)	598
Eco130I	CCWWGG	1 cut(s)	9
Eco147I	AGGCCT	1 cut(s)	890
Eco24I	GRGCYC	2 cut(s)	494, 589
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	402
Eco52I	CGGCCG	1 cut(s)	598
Eco53kI	GAGCTC	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	730
EcoICRI	GAGCTC	1 cut(s)	492
EcoRI	GAATTC	2 cut(s)	23, 520
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	2 cut(s)	494, 589
ErhI	CCWWGG	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	8 cut(s)	13, 19, 116, 157, 313, 453, 802, 883
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	4 cut(s)	338, 367, 403, 738
FatI	CATG	8 cut(s)	9, 15, 112, 153, 309, 449, 798, 879
FauI	CCCGC	1 cut(s)	795
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	2 cut(s)	278, 884
FriOI	GRGCYC	2 cut(s)	494, 589
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	3 cut(s)	737, 807, 892
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	1 cut(s)	513
GsaI	CCCAGC	1 cut(s)	183
HaeIII	GGCC	8 cut(s)	273, 454, 473, 549, 600, 640, 878, 890
HapII	CCGG	5 cut(s)	364, 455, 474, 589, 601
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	517
Hin1I	GRCGYC	1 cut(s)	575
Hin1II	CATG	8 cut(s)	13, 19, 116, 157, 313, 453, 802, 883
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HindIII	AAGCTT	1 cut(s)	506
HpaII	CCGG	5 cut(s)	364, 455, 474, 589, 601
HphI	GGTGA	2 cut(s)	19, 581
Hpy166II	GTNNAC	1 cut(s)	854
Hpy188I	TCNGA	3 cut(s)	705, 749, 779
Hpy188III	TCNNGA	3 cut(s)	188, 295, 464
Hpy8I	GTNNAC	1 cut(s)	854
HpyAV	CCTTC	6 cut(s)	255, 344, 380, 407, 560, 744
HpyCH4III	ACNGT	5 cut(s)	406, 435, 686, 718, 765
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	5 cut(s)	126, 280, 541, 595, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 514
HpyF3I	CTNAG	3 cut(s)	249, 612, 658
HpySE526I	ACGT	1 cut(s)	575
Hsp92I	GRCGYC	1 cut(s)	575
Hsp92II	CATG	8 cut(s)	13, 19, 116, 157, 313, 453, 802, 883
HspAI	GCGC	1 cut(s)	515
Kzo9I	GATC	2 cut(s)	184, 606
LmnI	GCTCC	1 cut(s)	584
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	3 cut(s)	737, 807, 892
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	2 cut(s)	186, 608
MboI	GATC	2 cut(s)	184, 606
MboII	GAAGA	3 cut(s)	572, 736, 743
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	3 cut(s)	494, 589, 856
MlsI	TGGCCA	3 cut(s)	549, 640, 878
MluCI	AATT	6 cut(s)	23, 231, 467, 520, 620, 666
MluNI	TGGCCA	3 cut(s)	549, 640, 878
MmeI	TCCRAC	2 cut(s)	51, 812
Mox20I	TGGCCA	3 cut(s)	549, 640, 878
MscI	TGGCCA	3 cut(s)	549, 640, 878
MseI	TTAA	2 cut(s)	104, 219
MslI	CAYNNNNRTG	2 cut(s)	14, 336
Msp20I	TGGCCA	3 cut(s)	549, 640, 878
MspI	CCGG	5 cut(s)	364, 455, 474, 589, 601
MspR9I	CCNGG	2 cut(s)	589, 602
MunI	CAATTG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	123, 514
NciI	CCSGG	2 cut(s)	589, 602
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	184, 606
NlaIII	CATG	8 cut(s)	13, 19, 116, 157, 313, 453, 802, 883
NlaIV	GGNNCC	2 cut(s)	186, 586
PceI	AGGCCT	1 cut(s)	890
PflFI	GACNNNGTC	1 cut(s)	783
PflMI	CCANNNNNTGG	2 cut(s)	435, 836
PkrI	GCNGC	1 cut(s)	514
PshAI	GACNNNNGTC	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	186, 586
PspPI	GGNCC	1 cut(s)	402
PsrI	GAACNNNNNNTAC	2 cut(s)	674, 706
PsuI	RGATCY	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	783
RsaI	GTAC	2 cut(s)	264, 692
RsaNI	GTAC	2 cut(s)	263, 691
RseI	CAYNNNNRTG	2 cut(s)	14, 336
SacI	GAGCTC	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	104, 219
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	2 cut(s)	184, 606
Sau96I	GGNCC	1 cut(s)	402
ScaI	AGTACT	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	589, 602
SduI	GDGCHC	3 cut(s)	494, 589, 856
SfaNI	GCATC	1 cut(s)	550
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	2 cut(s)	14, 336
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	6 cut(s)	23, 231, 467, 520, 620, 666
SseBI	AGGCCT	1 cut(s)	890
SsiI	CCGC	3 cut(s)	140, 376, 802
SspMI	CTAG	3 cut(s)	737, 807, 892
SstI	GAGCTC	1 cut(s)	494
StuI	AGGCCT	1 cut(s)	890
StyD4I	CCNGG	2 cut(s)	587, 600
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	5 cut(s)	406, 435, 686, 718, 765
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	1 cut(s)	144
TasI	AATT	6 cut(s)	23, 231, 467, 520, 620, 666
TatI	WGTACW	2 cut(s)	262, 690
Tru1I	TTAA	2 cut(s)	104, 219
Tru9I	TTAA	2 cut(s)	104, 219
TscAI	CASTG	3 cut(s)	202, 616, 770
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	1 cut(s)	280
TspRI	CASTG	3 cut(s)	202, 616, 770
Tth111I	GACNNNGTC	1 cut(s)	783
Van91I	CCANNNNNTGG	2 cut(s)	435, 836
VneI	GTGCAC	1 cut(s)	852
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	4 cut(s)	23, 520, 620, 666
XspI	CTAG	3 cut(s)	737, 807, 892
ZraI	GACGTC	1 cut(s)	576
ZrmI	AGTACT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.