Rh7AG359500

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001762
Physical Location & Seq
Reverse (-)
46122037 .. 46122559
523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG359500.1

Sequence Viewer

Length: 348 bp
ATGGATATGGCCGTCGATGATGACTTGTTGGTGAATCCTAAGCCGATGATGGAGGAGCCACAGGTCGACAACCGAGTTTATCCGATCCCCGATACAGTCCCAGATGAAAATTTGGAAAAAATTTTTCAGAACGCGAAATCGAAATTAGAAAAGTATGGCATCACAATCACTGTGAATGCGGCTGAGCGAACCCTCACATTCGTACAAGGGGTAAGTAAGTGGAACCCTGGCCCTGTCTTGAACAAATATGGCAAGTTTGAAATCACCACTTTCACTGTGCCCTTCCCCGAAAATCGAGGTGCTTATTCTCTCTTATCTACCTTATTACTACCTAATGATTCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

115

Amino Acids

12.92

Weight (kDa)

4.62

Isoelectric Point (pI)

25.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AccII CGCG 1 cut(s) 134
AciI CCGC 1 cut(s) 179
AclWI GGATC 1 cut(s) 79
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 2 cut(s) 109, 120
AfaI GTAC 1 cut(s) 204
AgsI TTSAA 3 cut(s) 241, 260, 342
AjnI CCWGG 1 cut(s) 226
AlwI GGATC 1 cut(s) 79
AoxI GGCC 2 cut(s) 9, 229
ApoI RAATTY 2 cut(s) 109, 120
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 43, 256
BaeGI GKGCMC 1 cut(s) 282
BccI CCATC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 228
BisI GCNGC 1 cut(s) 180
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 57, 224
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 2 cut(s) 11, 231
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 2 cut(s) 11, 231
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 84
Bsp1720I GCTNAGC 1 cut(s) 183
BspACI CCGC 1 cut(s) 179
BspANI GGCC 2 cut(s) 11, 231
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 57, 224
BspPI GGATC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 3 cut(s) 97, 172, 277
BstDEI CTNAG 2 cut(s) 39, 183
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 1 cut(s) 134
BsuRI GGCC 2 cut(s) 11, 231
BtsIMutI CAGTG 2 cut(s) 168, 273
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 203
CviJI RGCY 5 cut(s) 11, 43, 58, 182, 231
CviKI_1 RGCY 5 cut(s) 11, 43, 58, 182, 231
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 2 cut(s) 39, 183
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
EaeI YGGCCR 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 226
FaiI YATR 3 cut(s) 8, 156, 249
FaqI GGGAC 1 cut(s) 83
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 2 cut(s) 11, 231
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 34, 338
HphI GGTGA 2 cut(s) 43, 256
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 84, 129
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 3 cut(s) 97, 172, 277
HpyF3I CTNAG 2 cut(s) 39, 183
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 5 cut(s) 47, 114, 213, 240, 246
LweI GCATC 1 cut(s) 168
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 3 cut(s) 109, 120, 143
MnlI CCTC 3 cut(s) 46, 203, 290
MspR9I CCNGG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 1 cut(s) 228
MvnI CGCG 1 cut(s) 134
NdeII GATC 1 cut(s) 84
NlaIV GGNNCC 2 cut(s) 57, 224
PctI GAATGC 1 cut(s) 181
PfeI GAWTC 2 cut(s) 34, 338
PkrI GCNGC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 57, 224
PspPI GGNCC 1 cut(s) 230
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SalI GTCGAC 1 cut(s) 65
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 1 cut(s) 282
SetI ASST 4 cut(s) 66, 301, 323, 334
SfaNI GCATC 1 cut(s) 168
Sse9I AATT 3 cut(s) 109, 120, 143
SsiI CCGC 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 3 cut(s) 97, 172, 277
TaqI TCGA 4 cut(s) 15, 66, 140, 295
TasI AATT 3 cut(s) 109, 120, 143
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 2 cut(s) 34, 338
TscAI CASTG 2 cut(s) 175, 280
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 2 cut(s) 175, 280
XapI RAATTY 2 cut(s) 109, 120
XmiI GTMKAC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.