Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Reverse (-)

27054118 .. 27055206

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG276100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGTATTGTCAGCAACCAGAGGTACCAAGGAGCCAGACATCATTGACAAGGCTTGGCAGCTCCTTGAACTTTTGTCAACAACTCATGTTCCAGCATCTATGGCAATAGAATTATTGGATTGGGTGCAAACTTGCCTTATCAAAATTGGGAATCAAGAAGGTGGACTCTGCTCATTATTTGGGATCAAGGAGGAGGAATACCGTGAACGATGGGAATGTCTTCGCCACTCCCTACAGATACTTGCTGAAGTGGTGGAGTGTAATGTATTTCTTAACGATAACACTGTTGCTGCTGTAGGGGAAACCTCAGTAGTAATGATCAAGCAGTTGGCGGAAAACTGCATTCTTCATAATGCGTGTCCTGGGACCGCCGCCAAGAATTATAATTATTTATCAGAAGGTGTGAAAAGTATTGAGGACCCACATGTACAGTACATGGATATAGGAAATTCTGGGTCAGCGATGATGGTCATGCCTGAACTCACCTCTTTCTGTATGTTCTTGGATGGAGAACAAGCAACTCGGTTGGAAAAAGATTGGAAGTGTGTGGAAGCGTGCTTAAAGAAGCATGGCTTTTCTTGCAAACTGATTGCTGCGGTCGAGTGTTACATGATGGTCTCCAAAACTACAAACGCTGGGGATCCAGATATCACTGACAAGATTTGGGATTTCCTTAAACTTTTGTCAATTGATGTTGAGCCTTCTAAGGCAATAGAAGTACTGAATGGCCGTCTGCATTTTGACTTCATCCCGACGGGGTATAGATATGGTGGTGGGCTCTGTTCAAAATTTAGGATCACTGAGGAGCAATTTGCTGAAGTGGTGTGGCCACGTATTGAGCGCGGCTTAGAGGAAATTTCAACTCAACTGAAGTGCGAGTACATTATTAGTCCGAACTTTATTACTGTCTTGGGACCTGGAGAACTAGGGGAGTTCAGAAGGTTTGTGGAACAGTGTTTTTGTTTCAGACCTCGTCCGACTTGTGTCATGCGGGCTAGGATAAAAGGCAGGTTCGTGCCACCTTTTGGTCGTGAGGCTCGTGCATTTTTCTTTGGCGAGGATGTGGCAAGCGGCCTAGAGATGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

362

Amino Acids

40.82

Weight (kDa)

5.11

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
Acc36I	ACCTGC	1 cut(s)	999
Acc65I	GGTACC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	1025
AccII	CGCG	1 cut(s)	843
AciI	CCGC	7 cut(s)	332, 369, 372, 596, 843, 991, 1071
AclWI	GGATC	4 cut(s)	191, 635, 648, 803
AcoI	YGGCCR	2 cut(s)	727, 827
AcsI	RAATTY	3 cut(s)	448, 788, 855
AcuI	CTGAAG	3 cut(s)	267, 837, 890
AfaI	GTAC	5 cut(s)	25, 429, 434, 720, 881
AfiI	CCNNNNNNNGG	2 cut(s)	1025, 1081
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	3 cut(s)	68, 786, 861
AjnI	CCWGG	2 cut(s)	361, 916
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	622
AlwI	GGATC	4 cut(s)	191, 635, 648, 803
AoxI	GGCC	3 cut(s)	727, 827, 1072
ApeKI	GCWGC	3 cut(s)	58, 290, 593
ApoI	RAATTY	3 cut(s)	448, 788, 855
Asp700I	GAANNNNTTC	1 cut(s)	219
Asp718I	GGTACC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	843
AspS9I	GGNCC	3 cut(s)	366, 418, 914
AsuHPI	GGTGA	1 cut(s)	475
AvaII	GGWCC	3 cut(s)	366, 418, 914
BalI	TGGCCA	1 cut(s)	829
BamHI	GGATCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	780
BarI	GAAGNNNNNNTAC	2 cut(s)	863, 895
BauI	CACGAG	1 cut(s)	1038
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	70, 277, 580
BccI	CCATC	5 cut(s)	204, 460, 500, 607, 1075
BceAI	ACGGC	1 cut(s)	714
BciT130I	CCWGG	2 cut(s)	363, 918
BclI	TGATCA	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	622
BfaI	CTAG	3 cut(s)	926, 996, 1076
BfmI	CTRYAG	2 cut(s)	233, 294
BfuAI	ACCTGC	1 cut(s)	999
BisI	GCNGC	6 cut(s)	59, 291, 372, 594, 844, 1072
BlsI	GCNGC	6 cut(s)	60, 292, 373, 595, 845, 1073
BmcAI	AGTACT	1 cut(s)	720
Bme1390I	CCNGG	2 cut(s)	363, 918
Bme18I	GGWCC	3 cut(s)	366, 418, 914
BmgT120I	GGNCC	3 cut(s)	366, 418, 914
BmiI	GGNNCC	6 cut(s)	25, 33, 367, 420, 642, 915
BmrFI	CCNGG	2 cut(s)	363, 918
BmsI	GCATC	1 cut(s)	104
BoxI	GACNNNNGTC	1 cut(s)	983
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	939
BsaAI	YACGTR	1 cut(s)	833
BsaI	GGTCTC	1 cut(s)	622
BsaJI	CCNNGG	2 cut(s)	27, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	1025, 1081
BseBI	CCWGG	2 cut(s)	363, 918
BseDI	CCNNGG	2 cut(s)	27, 362
BseGI	GGATG	3 cut(s)	511, 747, 1066
BseLI	CCNNNNNNNGG	2 cut(s)	1025, 1081
BseMII	CTCAG	2 cut(s)	321, 792
BseRI	GAGGAG	2 cut(s)	206, 818
BseXI	GCAGC	3 cut(s)	70, 277, 580
BseYI	CCCAGC	1 cut(s)	635
Bsh1236I	CGCG	1 cut(s)	843
Bsh1285I	CGRYCG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	729, 829, 1074
BshNI	GGYRCC	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	600
BslFI	GGGAC	2 cut(s)	379, 927
BslI	CCNNNNNNNGG	2 cut(s)	1025, 1081
BsmAI	GTCTC	1 cut(s)	622
BsmFI	GGGAC	2 cut(s)	379, 927
BsmI	GAATGC	1 cut(s)	342
BsnI	GGCC	3 cut(s)	729, 829, 1074
Bso31I	GGTCTC	1 cut(s)	622
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	4 cut(s)	183, 318, 640, 795
BspACI	CCGC	7 cut(s)	332, 369, 372, 596, 843, 991, 1071
BspANI	GGCC	3 cut(s)	729, 829, 1074
BspCNI	CTCAG	2 cut(s)	320, 793
BspFNI	CGCG	1 cut(s)	843
BspLI	GGNNCC	6 cut(s)	25, 33, 367, 420, 642, 915
BspMI	ACCTGC	1 cut(s)	999
BspPI	GGATC	4 cut(s)	191, 635, 648, 803
BspT107I	GGYRCC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	622
BsrGI	TGTACA	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	27, 362
BssMI	GATC	4 cut(s)	183, 318, 640, 795
BssSI	CACGAG	1 cut(s)	1038
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	1038
Bst2UI	CCWGG	2 cut(s)	363, 918
Bst4CI	ACNGT	5 cut(s)	203, 286, 432, 907, 954
BstAUI	TGTACA	1 cut(s)	427
BstBAI	YACGTR	1 cut(s)	833
BstC8I	GCNNGC	3 cut(s)	556, 993, 1069
BstDEI	CTNAG	4 cut(s)	307, 705, 801, 847
BstF5I	GGATG	3 cut(s)	511, 747, 1066
BstFNI	CGCG	1 cut(s)	843
BstHHI	GCGC	1 cut(s)	843
BstKTI	GATC	4 cut(s)	186, 321, 643, 798
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	4 cut(s)	183, 318, 640, 795
BstMCI	CGRYCG	1 cut(s)	600
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 579
BstNI	CCWGG	2 cut(s)	363, 918
BstNSI	RCATGY	1 cut(s)	428
BstPAI	GACNNNNGTC	1 cut(s)	983
BstSCI	CCNGG	2 cut(s)	361, 916
BstSFI	CTRYAG	2 cut(s)	233, 294
BstUI	CGCG	1 cut(s)	843
BstV1I	GCAGC	3 cut(s)	70, 277, 580
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	3 cut(s)	729, 829, 1074
BtgZI	GCGATG	1 cut(s)	476
BtsCI	GGATG	3 cut(s)	511, 747, 1066
BtsIMutI	CAGTG	4 cut(s)	282, 651, 798, 959
BveI	ACCTGC	1 cut(s)	999
Cac8I	GCNNGC	3 cut(s)	556, 993, 1069
CfoI	GCGC	1 cut(s)	843
Cfr13I	GGNCC	3 cut(s)	366, 418, 914
Csp6I	GTAC	5 cut(s)	24, 428, 433, 719, 880
CviAII	CATG	7 cut(s)	86, 425, 436, 472, 569, 610, 988
CviQI	GTAC	5 cut(s)	24, 428, 433, 719, 880
DdeI	CTNAG	4 cut(s)	307, 705, 801, 847
DpnI	GATC	4 cut(s)	185, 320, 642, 797
DpnII	GATC	4 cut(s)	183, 318, 640, 795
EaeI	YGGCCR	2 cut(s)	727, 827
EciI	GGCGGA	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	780
Eco31I	GGTCTC	1 cut(s)	622
Eco32I	GATATC	1 cut(s)	649
Eco47I	GGWCC	3 cut(s)	366, 418, 914
Eco57I	CTGAAG	3 cut(s)	267, 837, 890
EcoO109I	RGGNCCY	2 cut(s)	418, 914
EcoRII	CCWGG	2 cut(s)	361, 916
EcoRV	GATATC	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	7 cut(s)	89, 428, 439, 475, 572, 613, 991
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	2 cut(s)	379, 927
FatI	CATG	7 cut(s)	85, 424, 435, 471, 568, 609, 987
FauI	CCCGC	1 cut(s)	984
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	6 cut(s)	59, 291, 372, 594, 844, 1072
FokI	GGATG	3 cut(s)	518, 734, 1073
FriOI	GRGCYC	1 cut(s)	780
Fsp4HI	GCNGC	6 cut(s)	59, 291, 372, 594, 844, 1072
FspBI	CTAG	3 cut(s)	926, 996, 1076
GlaI	GCGC	1 cut(s)	842
GluI	GCNGC	6 cut(s)	59, 291, 372, 594, 844, 1072
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	939
HaeIII	GGCC	3 cut(s)	729, 829, 1074
HhaI	GCGC	1 cut(s)	843
Hin1II	CATG	7 cut(s)	89, 428, 439, 475, 572, 613, 991
Hin6I	GCGC	1 cut(s)	841
HinP1I	GCGC	1 cut(s)	841
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	2 cut(s)	151, 165
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	3 cut(s)	78, 164, 206
Hpy188I	TCNGA	5 cut(s)	397, 894, 938, 968, 978
Hpy188III	TCNNGA	4 cut(s)	155, 644, 751, 1031
Hpy8I	GTNNAC	3 cut(s)	78, 164, 206
Hpy99I	CGWCG	1 cut(s)	757
HpyAV	CCTTC	4 cut(s)	152, 392, 711, 933
HpyCH4III	ACNGT	5 cut(s)	203, 286, 432, 907, 954
HpyCH4IV	ACGT	1 cut(s)	832
HpyCH4V	TGCA	5 cut(s)	127, 342, 582, 736, 1043
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 579
HpyF3I	CTNAG	4 cut(s)	307, 705, 801, 847
HpySE526I	ACGT	1 cut(s)	832
Hsp92II	CATG	7 cut(s)	89, 428, 439, 475, 572, 613, 991
HspAI	GCGC	1 cut(s)	841
KpnI	GGTACC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	4 cut(s)	183, 318, 640, 795
LmnI	GCTCC	3 cut(s)	31, 66, 805
Lsp1109I	GCAGC	3 cut(s)	70, 277, 580
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	3 cut(s)	926, 996, 1076
MaeII	ACGT	1 cut(s)	832
MaeIII	GTNAC	1 cut(s)	605
MalI	GATC	4 cut(s)	185, 320, 642, 797
MboI	GATC	4 cut(s)	183, 318, 640, 795
MboII	GAAGA	2 cut(s)	212, 338
MfeI	CAATTG	1 cut(s)	687
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	1 cut(s)	780
MlsI	TGGCCA	1 cut(s)	829
MluCI	AATT	9 cut(s)	110, 144, 379, 385, 448, 687, 788, 809, 855
MluNI	TGGCCA	1 cut(s)	829
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	2 cut(s)	507, 1001
Mox20I	TGGCCA	1 cut(s)	829
MroXI	GAANNNNTTC	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	829
MseI	TTAA	3 cut(s)	273, 560, 675
Msp20I	TGGCCA	1 cut(s)	829
MspR9I	CCNGG	2 cut(s)	363, 918
MunI	CAATTG	1 cut(s)	687
Mva1269I	GAATGC	1 cut(s)	342
MvaI	CCWGG	2 cut(s)	363, 918
MvnI	CGCG	1 cut(s)	843
MwoI	GCNNNNNNNGC	2 cut(s)	101, 579
NdeII	GATC	4 cut(s)	183, 318, 640, 795
NlaIII	CATG	7 cut(s)	89, 428, 439, 475, 572, 613, 991
NlaIV	GGNNCC	6 cut(s)	25, 33, 367, 420, 642, 915
NspI	RCATGY	1 cut(s)	428
PciI	ACATGT	1 cut(s)	424
PcsI	WCGNNNNNNNCGW	1 cut(s)	1036
PctI	GAATGC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	151
PflFI	GACNNNGTC	1 cut(s)	972
PflMI	CCANNNNNTGG	1 cut(s)	1025
PkrI	GCNGC	6 cut(s)	60, 292, 373, 595, 845, 1073
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
Ppu21I	YACGTR	1 cut(s)	833
PpuMI	RGGWCCY	2 cut(s)	418, 914
PscI	ACATGT	1 cut(s)	424
PshAI	GACNNNNGTC	1 cut(s)	983
PsiI	TTATAA	1 cut(s)	384
Psp5II	RGGWCCY	2 cut(s)	418, 914
Psp6I	CCWGG	2 cut(s)	361, 916
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	2 cut(s)	361, 916
PspN4I	GGNNCC	6 cut(s)	25, 33, 367, 420, 642, 915
PspPI	GGNCC	3 cut(s)	366, 418, 914
PspPPI	RGGWCCY	2 cut(s)	418, 914
PsuI	RGATCY	1 cut(s)	640
PsyI	GACNNNGTC	1 cut(s)	972
RsaI	GTAC	5 cut(s)	25, 429, 434, 720, 881
RsaNI	GTAC	5 cut(s)	24, 428, 433, 719, 880
SaqAI	TTAA	3 cut(s)	273, 560, 675
SatI	GCNGC	6 cut(s)	59, 291, 372, 594, 844, 1072
Sau3AI	GATC	4 cut(s)	183, 318, 640, 795
Sau96I	GGNCC	3 cut(s)	366, 418, 914
ScaI	AGTACT	1 cut(s)	720
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	363, 918
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	1 cut(s)	104
SfcI	CTRYAG	2 cut(s)	233, 294
SinI	GGWCC	3 cut(s)	366, 418, 914
Sse9I	AATT	9 cut(s)	110, 144, 379, 385, 448, 687, 788, 809, 855
SsiI	CCGC	7 cut(s)	332, 369, 372, 596, 843, 991, 1071
SspMI	CTAG	3 cut(s)	926, 996, 1076
StyD4I	CCNGG	2 cut(s)	361, 916
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	5 cut(s)	203, 286, 432, 907, 954
TaiI	ACGT	1 cut(s)	835
TaqI	TCGA	1 cut(s)	600
TasI	AATT	9 cut(s)	110, 144, 379, 385, 448, 687, 788, 809, 855
TatI	WGTACW	4 cut(s)	427, 432, 718, 879
TauI	GCSGC	3 cut(s)	374, 846, 1074
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	3 cut(s)	273, 560, 675
Tru9I	TTAA	3 cut(s)	273, 560, 675
TscAI	CASTG	4 cut(s)	289, 658, 805, 959
TseI	GCWGC	3 cut(s)	58, 290, 593
TspDTI	ATGAA	2 cut(s)	338, 736
TspRI	CASTG	4 cut(s)	289, 658, 805, 959
Tth111I	GACNNNGTC	1 cut(s)	972
Van91I	CCANNNNNTGG	1 cut(s)	1025
VpaK11BI	GGWCC	3 cut(s)	366, 418, 914
XapI	RAATTY	3 cut(s)	448, 788, 855
XceI	RCATGY	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	3 cut(s)	926, 996, 1076
ZrmI	AGTACT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.