Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001551.1

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Forward (+)

102932 .. 106371

Gene Structure 3440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001551.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgatgaccatggtcatgcctgaattcacctctttctgtatgttctttgatggagaacaagcaactcggttggaaaaagattggaagtgtgtggaagcgtgcttaaagaagcatggcttttcttgcaaactgattgctgcggtcgagtgttacatgatagtctccaaaactacaaacgctggggatcctgatatcactgacaagatttgggatttccttaaacttttgtcaattgatgttgaaccttctaagacaatagaagtacggaatgatcgtctgcattttgacttcatcctgacagggaccgtggaggaaggggctaaaaagcccagacggtggagtcgtctaacatggccggaaaatcacgaattggccggaaaaccaataacgagctcgcaggaaatcaagcttcctgcgccgaattctgccattatcatcgtgcatcgtggccacagggaggaagaggaaggtgagacgtccataggagcccggttgcacggccgggggatcattgaggagaaatttgctaaagtggtgtggccacatattgagagtggcttagaggaaatttcagctcaactgaactgtgagtacattattagtccgaactttattattgtcttgggacttggagaactagggatgttcagaaggtttgtggaacagtgtttttgtttcagacctcgtccaacttgtgtcatgcgggctaggataaaaggaaggttcgtgccaccttttggttgtgaggctcgtgcacttttctttggcgaggatgtggccatgcttgaggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

264

Amino Acids

30.09

Weight (kDa)

6.03

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	339
AatII	GACGTC	1 cut(s)	479
AccB7I	CCANNNNNTGG	2 cut(s)	336, 737
AciI	CCGC	2 cut(s)	140, 703
AclWI	GGATC	3 cut(s)	179, 192, 515
AcoI	YGGCCR	6 cut(s)	353, 372, 448, 499, 539, 777
AcsI	RAATTY	4 cut(s)	23, 421, 521, 567
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	2 cut(s)	264, 593
AfiI	CCNNNNNNNGG	3 cut(s)	336, 457, 737
AgsI	TTSAA	1 cut(s)	242
AluBI	AGCT	3 cut(s)	393, 409, 575
AluI	AGCT	3 cut(s)	393, 409, 575
Alw21I	GWGCWC	2 cut(s)	395, 757
Alw26I	GTCTC	2 cut(s)	166, 467
Alw44I	GTGCAC	1 cut(s)	753
AlwI	GGATC	3 cut(s)	179, 192, 515
AoxI	GGCC	7 cut(s)	353, 372, 448, 499, 539, 777, 789
ApaLI	GTGCAC	1 cut(s)	753
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	4 cut(s)	23, 421, 521, 567
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	303
AsuC2I	CCSGG	2 cut(s)	490, 503
AsuHPI	GGTGA	2 cut(s)	19, 482
AvaII	GGWCC	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	757
BalI	TGGCCA	3 cut(s)	450, 541, 779
BamHI	GGATCC	1 cut(s)	184
BanII	GRGCYC	2 cut(s)	395, 490
BauI	CACGAG	1 cut(s)	750
Bbv12I	GWGCWC	2 cut(s)	395, 757
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	1 cut(s)	514
BcnI	CCSGG	2 cut(s)	490, 503
BcoDI	GTCTC	2 cut(s)	166, 467
BfaI	CTAG	3 cut(s)	638, 708, 793
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	490, 503
Bme18I	GGWCC	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	3 cut(s)	186, 304, 487
BmrFI	CCNGG	2 cut(s)	490, 503
BmsI	GCATC	1 cut(s)	451
BoxI	GACNNNNGTC	1 cut(s)	11
BpuMI	CCSGG	2 cut(s)	490, 503
BsaHI	GRCGYC	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	9, 306, 502
Bsc4I	CCNNNNNNNGG	3 cut(s)	336, 457, 737
BseDI	CCNNGG	3 cut(s)	9, 306, 502
BseGI	GGATG	3 cut(s)	291, 648, 778
BseLI	CCNNNNNNNGG	3 cut(s)	336, 457, 737
BseRI	GAGGAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	757
BseX3I	CGGCCG	1 cut(s)	499
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	179
Bsh1285I	CGRYCG	2 cut(s)	144, 502
BshFI	GGCC	7 cut(s)	355, 374, 450, 501, 541, 779, 791
BsiEI	CGRYCG	2 cut(s)	144, 502
BsiHKAI	GWGCWC	2 cut(s)	395, 757
BsiSI	CCGG	4 cut(s)	356, 375, 490, 502
BslFI	GGGAC	2 cut(s)	316, 639
BslI	CCNNNNNNNGG	3 cut(s)	336, 457, 737
BsmAI	GTCTC	2 cut(s)	166, 467
BsmBI	CGTCTC	1 cut(s)	467
BsmFI	GGGAC	2 cut(s)	316, 639
BsnI	GGCC	7 cut(s)	355, 374, 450, 501, 541, 779, 791
Bsp1286I	GDGCHC	3 cut(s)	395, 490, 757
Bsp143I	GATC	3 cut(s)	184, 271, 507
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	2 cut(s)	140, 703
BspANI	GGCC	7 cut(s)	355, 374, 450, 501, 541, 779, 791
BspLI	GGNNCC	3 cut(s)	186, 304, 487
BspPI	GGATC	3 cut(s)	179, 192, 515
BssECI	CCNNGG	3 cut(s)	9, 306, 502
BssMI	GATC	3 cut(s)	184, 271, 507
BssNI	GRCGYC	1 cut(s)	476
BssSI	CACGAG	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	750
Bst4CI	ACNGT	4 cut(s)	307, 336, 587, 666
Bst6I	CTCTTC	1 cut(s)	456
BstACI	GRCGYC	1 cut(s)	476
BstC8I	GCNNGC	3 cut(s)	100, 395, 705
BstDEI	CTNAG	2 cut(s)	249, 559
BstDSI	CCRYGG	2 cut(s)	9, 306
BstF5I	GGATG	3 cut(s)	291, 648, 778
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	3 cut(s)	187, 274, 510
BstMAI	GTCTC	2 cut(s)	166, 467
BstMBI	GATC	3 cut(s)	184, 271, 507
BstMCI	CGRYCG	2 cut(s)	144, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 415
BstPAI	GACNNNNGTC	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	488, 501
BstSLI	GKGCMC	1 cut(s)	757
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BstZI	CGGCCG	1 cut(s)	499
BsuRI	GGCC	7 cut(s)	355, 374, 450, 501, 541, 779, 791
BtgI	CCRYGG	2 cut(s)	9, 306
BtsCI	GGATG	3 cut(s)	291, 648, 778
BtsIMutI	CAGTG	2 cut(s)	195, 671
Cac8I	GCNNGC	3 cut(s)	100, 395, 705
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	263, 592
CviAII	CATG	7 cut(s)	10, 16, 113, 154, 351, 700, 781
CviQI	GTAC	2 cut(s)	263, 592
DdeI	CTNAG	2 cut(s)	249, 559
DpnI	GATC	3 cut(s)	186, 273, 509
DpnII	GATC	3 cut(s)	184, 271, 507
DrdI	GACNNNNNNGTC	1 cut(s)	339
DseDI	GACNNNNNNGTC	1 cut(s)	339
EaeI	YGGCCR	6 cut(s)	353, 372, 448, 499, 539, 777
EagI	CGGCCG	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Ecl136II	GAGCTC	1 cut(s)	393
EclXI	CGGCCG	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	9
Eco147I	AGGCCT	1 cut(s)	791
Eco24I	GRGCYC	2 cut(s)	395, 490
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	303
Eco52I	CGGCCG	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	393
EcoICRI	GAGCTC	1 cut(s)	393
EcoRI	GAATTC	2 cut(s)	23, 421
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	2 cut(s)	395, 490
ErhI	CCWWGG	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	7 cut(s)	13, 19, 116, 157, 354, 703, 784
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	2 cut(s)	316, 639
FatI	CATG	7 cut(s)	9, 15, 112, 153, 350, 699, 780
FauI	CCCGC	1 cut(s)	696
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	3 cut(s)	278, 655, 785
FriOI	GRGCYC	2 cut(s)	395, 490
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	3 cut(s)	638, 708, 793
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	1 cut(s)	138
GsaI	CCCAGC	1 cut(s)	183
HaeIII	GGCC	7 cut(s)	355, 374, 450, 501, 541, 779, 791
HapII	CCGG	4 cut(s)	356, 375, 490, 502
HhaI	GCGC	1 cut(s)	418
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	7 cut(s)	13, 19, 116, 157, 354, 703, 784
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	1 cut(s)	340
HpaII	CCGG	4 cut(s)	356, 375, 490, 502
HphI	GGTGA	2 cut(s)	19, 482
Hpy166II	GTNNAC	1 cut(s)	755
Hpy188I	TCNGA	3 cut(s)	606, 650, 680
Hpy188III	TCNNGA	3 cut(s)	188, 295, 365
Hpy8I	GTNNAC	1 cut(s)	755
HpyAV	CCTTC	5 cut(s)	255, 308, 461, 645, 714
HpyCH4III	ACNGT	4 cut(s)	307, 336, 587, 666
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	5 cut(s)	126, 280, 442, 496, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 415
HpyF3I	CTNAG	2 cut(s)	249, 559
HpySE526I	ACGT	1 cut(s)	476
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	7 cut(s)	13, 19, 116, 157, 354, 703, 784
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	3 cut(s)	184, 271, 507
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	3 cut(s)	638, 708, 793
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	3 cut(s)	186, 273, 509
MboI	GATC	3 cut(s)	184, 271, 507
MboII	GAAGA	1 cut(s)	473
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	3 cut(s)	395, 490, 757
MlsI	TGGCCA	3 cut(s)	450, 541, 779
MluCI	AATT	6 cut(s)	23, 231, 368, 421, 521, 567
MluNI	TGGCCA	3 cut(s)	450, 541, 779
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	2 cut(s)	51, 713
Mox20I	TGGCCA	3 cut(s)	450, 541, 779
MscI	TGGCCA	3 cut(s)	450, 541, 779
MseI	TTAA	2 cut(s)	104, 219
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	3 cut(s)	450, 541, 779
MspI	CCGG	4 cut(s)	356, 375, 490, 502
MspR9I	CCNGG	2 cut(s)	490, 503
MunI	CAATTG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	123, 415
NciI	CCSGG	2 cut(s)	490, 503
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	184, 271, 507
NlaIII	CATG	7 cut(s)	13, 19, 116, 157, 354, 703, 784
NlaIV	GGNNCC	3 cut(s)	186, 304, 487
PceI	AGGCCT	1 cut(s)	791
PcsI	WCGNNNNNNNCGW	2 cut(s)	271, 340
PflFI	GACNNNGTC	1 cut(s)	684
PflMI	CCANNNNNTGG	2 cut(s)	336, 737
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PshAI	GACNNNNGTC	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	395
PspFI	CCCAGC	1 cut(s)	179
PspN4I	GGNNCC	3 cut(s)	186, 304, 487
PspPI	GGNCC	1 cut(s)	303
PsrI	GAACNNNNNNTAC	2 cut(s)	575, 607
PsuI	RGATCY	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	684
RsaI	GTAC	2 cut(s)	264, 593
RsaNI	GTAC	2 cut(s)	263, 592
RseI	CAYNNNNRTG	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	395
SaqAI	TTAA	2 cut(s)	104, 219
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	184, 271, 507
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	490, 503
SduI	GDGCHC	3 cut(s)	395, 490, 757
SfaNI	GCATC	1 cut(s)	451
SinI	GGWCC	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
Sse9I	AATT	6 cut(s)	23, 231, 368, 421, 521, 567
SseBI	AGGCCT	1 cut(s)	791
SsiI	CCGC	2 cut(s)	140, 703
SspMI	CTAG	3 cut(s)	638, 708, 793
SstI	GAGCTC	1 cut(s)	395
StuI	AGGCCT	1 cut(s)	791
StyD4I	CCNGG	2 cut(s)	488, 501
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	4 cut(s)	307, 336, 587, 666
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	1 cut(s)	144
TasI	AATT	6 cut(s)	23, 231, 368, 421, 521, 567
TatI	WGTACW	1 cut(s)	591
Tru1I	TTAA	2 cut(s)	104, 219
Tru9I	TTAA	2 cut(s)	104, 219
TscAI	CASTG	2 cut(s)	202, 671
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	2 cut(s)	202, 671
Tth111I	GACNNNGTC	1 cut(s)	684
Van91I	CCANNNNNTGG	2 cut(s)	336, 737
VneI	GTGCAC	1 cut(s)	753
VpaK11BI	GGWCC	1 cut(s)	303
XapI	RAATTY	4 cut(s)	23, 421, 521, 567
XspI	CTAG	3 cut(s)	638, 708, 793
ZraI	GACGTC	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.