Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Forward (+)

7537511 .. 7541351

Gene Structure 3841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G008240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGATGATCTTGATGATCCACATGCCAAGCACACGGAATGCTTGAAGTCTGGCCCTTTGTCGGACAAAGATGGAATGCTTGAAGTCTGCTCGCTATATGCATTACTCCATGAAAGACAGTTGGAAGAATCTTTGCCAATGCTCGAGTCTTCCCTAAGGAACTATGGCATTTCATATACTCTGGATAAGAATTCGATGGTATTGTCAGCAACGAGAGGTACCGAGGAGCCAGATATCATTGACAAGGCTTGGCAGCTCCTTGAACTTTTGTCAACAACTCATGTTCCAGCATCTATGGCAATAGAATTATTGGATTGCTTGCAAACTTGCCTTATCAAAATTGGGAATCAAGAAGGTGGACTCTGCTCATTATTTGGGATTAAGGAGGAGGAATATCGTGAACGATGGGAATGTCTTCGCCACTCCCTACAGATACTTGCTGAAGTGGTGGAGTGTAATGTATTTCTTAACGATAACACTGTTGCTGCTGTGGGGGAAACCTCAGTAGTAATGGTCAAGCAGTTGGTGGAAAACTGCATTCTTCATAATTTGTGTCCTGGGACTGCCGCCAAGAATTATAATTATTTATCAGAAGGTGTGAAAAGTATTGAGGACCCACATGTACAGCACATGGATATAGGAAATTCTGGGTCAGCGATGATGGTCATGCCTGAACTCTCCTCTTTCTGTATGTTCTTTGATGGAGAACAAGCAACTCGGTTGGAAAAAGATTGGAAGTGTGTGGAAGCGTGCTTAAAGAAGCATGGCATTTCTTGCAAACTGATTGCTGCGTGTTACATGATAGTCTCCAAAACAACAAATGCTGGGGATCCAGATATCACTGACAAGATTTGGGATTTCCTTAAACTTCTGTCAATTGATGTTGAGCCTTCTAAGGCAATAGAAGTACTGAATGGCCGTCTGCATTTTGACTTCATCCCGACAGGGTATATTTATGGTGGGGGGCTCTGTTCAAATTTAGGATCACTGAGGTGGGAGCAATTTGCTGAAGTGGTGTGGCCACGTATTGAGCGCGGCTTAGAGGAAATTTCAACTCAACTGAAGTGCGAGTACATTATTAGTGTAAGGAATACTGTTTACATTTTTTTTTATAGTATTCTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

375

Amino Acids

42.1

Weight (kDa)

4.8

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
Acc65I	GGTACC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	218
AccII	CGCG	1 cut(s)	1035
AciI	CCGC	2 cut(s)	567, 1035
AclWI	GGATC	4 cut(s)	11, 824, 837, 991
AcoI	YGGCCR	2 cut(s)	916, 1019
AcsI	RAATTY	4 cut(s)	190, 643, 976, 1047
AcuI	CTGAAG	3 cut(s)	462, 1029, 1082
AfaI	GTAC	4 cut(s)	220, 624, 909, 1073
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	5 cut(s)	46, 83, 263, 975, 1053
AjnI	CCWGG	1 cut(s)	556
AleI	CACNNNNGTG	1 cut(s)	991
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	811
AlwI	GGATC	4 cut(s)	11, 824, 837, 991
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	3 cut(s)	52, 916, 1019
ApeKI	GCWGC	3 cut(s)	253, 485, 788
ApoI	RAATTY	4 cut(s)	190, 643, 976, 1047
Asp700I	GAANNNNTTC	1 cut(s)	414
Asp718I	GGTACC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	1035
AspS9I	GGNCC	2 cut(s)	53, 613
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	613
AxyI	CCTNAGG	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	1021
BamHI	GGATCC	1 cut(s)	829
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	969
BarI	GAAGNNNNNNTAC	2 cut(s)	1055, 1087
BbsI	GAAGAC	2 cut(s)	141, 407
BbvI	GCAGC	3 cut(s)	265, 472, 775
BccI	CCATC	5 cut(s)	65, 190, 399, 655, 695
BceAI	ACGGC	1 cut(s)	903
BciT130I	CCWGG	1 cut(s)	558
BcoDI	GTCTC	1 cut(s)	811
BfmI	CTRYAG	1 cut(s)	428
BisI	GCNGC	5 cut(s)	254, 486, 567, 789, 1036
BlsI	GCNGC	5 cut(s)	255, 487, 568, 790, 1037
BmcAI	AGTACT	1 cut(s)	909
Bme1390I	CCNGG	1 cut(s)	558
Bme18I	GGWCC	1 cut(s)	613
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	53, 613
BmiI	GGNNCC	4 cut(s)	220, 228, 615, 831
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	1 cut(s)	299
BpiI	GAAGAC	2 cut(s)	141, 407
BsaAI	YACGTR	1 cut(s)	1025
BsaJI	CCNNGG	2 cut(s)	222, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse21I	CCTNAGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	222, 557
BseGI	GGATG	2 cut(s)	10, 936
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	516, 980
BseRI	GAGGAG	3 cut(s)	239, 401, 670
BseXI	GCAGC	3 cut(s)	265, 472, 775
BseYI	CCCAGC	1 cut(s)	824
Bsh1236I	CGCG	1 cut(s)	1035
BshFI	GGCC	3 cut(s)	54, 918, 1021
BshNI	GGYRCC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	811
BsmFI	GGGAC	1 cut(s)	574
BsmI	GAATGC	3 cut(s)	44, 81, 537
BsnI	GGCC	3 cut(s)	54, 918, 1021
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	969
Bsp1407I	TGTACA	1 cut(s)	622
Bsp143I	GATC	4 cut(s)	7, 16, 829, 983
BspACI	CCGC	2 cut(s)	567, 1035
BspANI	GGCC	3 cut(s)	54, 918, 1021
BspCNI	CTCAG	2 cut(s)	515, 981
BspFNI	CGCG	1 cut(s)	1035
BspLI	GGNNCC	4 cut(s)	220, 228, 615, 831
BspPI	GGATC	4 cut(s)	11, 824, 837, 991
BspT107I	GGYRCC	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	622
BssECI	CCNNGG	2 cut(s)	222, 557
BssMI	GATC	4 cut(s)	7, 16, 829, 983
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	120, 481, 1096
BstAPI	GCANNNNNTGC	1 cut(s)	774
BstAUI	TGTACA	1 cut(s)	622
BstBAI	YACGTR	1 cut(s)	1025
BstC8I	GCNNGC	3 cut(s)	92, 320, 751
BstDEI	CTNAG	5 cut(s)	155, 502, 894, 989, 1039
BstF5I	GGATG	2 cut(s)	10, 936
BstFNI	CGCG	1 cut(s)	1035
BstHHI	GCGC	1 cut(s)	1035
BstKTI	GATC	4 cut(s)	10, 19, 832, 986
BstMAI	GTCTC	1 cut(s)	811
BstMBI	GATC	4 cut(s)	7, 16, 829, 983
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 774
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	2 cut(s)	26, 623
BstSCI	CCNGG	1 cut(s)	556
BstSFI	CTRYAG	1 cut(s)	428
BstUI	CGCG	1 cut(s)	1035
BstV1I	GCAGC	3 cut(s)	265, 472, 775
BstV2I	GAAGAC	2 cut(s)	141, 407
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
Bsu36I	CCTNAGG	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	54, 918, 1021
BtgZI	GCGATG	1 cut(s)	671
BtsCI	GGATG	2 cut(s)	10, 936
BtsIMutI	CAGTG	3 cut(s)	477, 840, 986
Cac8I	GCNNGC	3 cut(s)	92, 320, 751
CfoI	GCGC	1 cut(s)	1035
Cfr13I	GGNCC	2 cut(s)	53, 613
Csp6I	GTAC	4 cut(s)	219, 623, 908, 1072
CviAII	CATG	8 cut(s)	23, 110, 281, 620, 631, 667, 764, 799
CviQI	GTAC	4 cut(s)	219, 623, 908, 1072
DdeI	CTNAG	5 cut(s)	155, 502, 894, 989, 1039
DpnI	GATC	4 cut(s)	9, 18, 831, 985
DpnII	GATC	4 cut(s)	7, 16, 829, 983
EaeI	YGGCCR	2 cut(s)	916, 1019
Eco24I	GRGCYC	1 cut(s)	969
Eco32I	GATATC	2 cut(s)	235, 838
Eco47I	GGWCC	1 cut(s)	613
Eco57I	CTGAAG	3 cut(s)	462, 1029, 1082
Eco81I	CCTNAGG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	613
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	556
EcoRV	GATATC	2 cut(s)	235, 838
EcoT22I	ATGCAT	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	969
FaeI	CATG	8 cut(s)	26, 113, 284, 623, 634, 670, 767, 802
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	8 cut(s)	22, 109, 280, 619, 630, 666, 763, 798
Fnu4HI	GCNGC	5 cut(s)	254, 486, 567, 789, 1036
FokI	GGATG	2 cut(s)	17, 923
FriOI	GRGCYC	1 cut(s)	969
Fsp4HI	GCNGC	5 cut(s)	254, 486, 567, 789, 1036
GlaI	GCGC	1 cut(s)	1034
GluI	GCNGC	5 cut(s)	254, 486, 567, 789, 1036
GsaI	CCCAGC	1 cut(s)	828
HaeIII	GGCC	3 cut(s)	54, 918, 1021
HhaI	GCGC	1 cut(s)	1035
Hin1II	CATG	8 cut(s)	26, 113, 284, 623, 634, 670, 767, 802
Hin6I	GCGC	1 cut(s)	1033
HinP1I	GCGC	1 cut(s)	1033
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HinfI	GANTC	4 cut(s)	128, 146, 346, 360
Hpy166II	GTNNAC	4 cut(s)	273, 359, 401, 1099
Hpy188I	TCNGA	2 cut(s)	64, 592
Hpy188III	TCNNGA	6 cut(s)	11, 182, 350, 398, 833, 940
Hpy8I	GTNNAC	4 cut(s)	273, 359, 401, 1099
HpyAV	CCTTC	3 cut(s)	347, 587, 900
HpyCH4III	ACNGT	3 cut(s)	120, 481, 1096
HpyCH4IV	ACGT	1 cut(s)	1024
HpyCH4V	TGCA	5 cut(s)	101, 322, 537, 777, 925
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 774
HpyF3I	CTNAG	5 cut(s)	155, 502, 894, 989, 1039
HpySE526I	ACGT	1 cut(s)	1024
Hsp92II	CATG	8 cut(s)	26, 113, 284, 623, 634, 670, 767, 802
HspAI	GCGC	1 cut(s)	1033
KpnI	GGTACC	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	7, 16, 829, 983
LmnI	GCTCC	3 cut(s)	226, 261, 997
Lsp1109I	GCAGC	3 cut(s)	265, 472, 775
LweI	GCATC	1 cut(s)	299
MaeII	ACGT	1 cut(s)	1024
MaeIII	GTNAC	1 cut(s)	794
MalI	GATC	4 cut(s)	9, 18, 831, 985
MboI	GATC	4 cut(s)	7, 16, 829, 983
MboII	GAAGA	4 cut(s)	137, 141, 407, 533
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	1 cut(s)	969
MlsI	TGGCCA	1 cut(s)	1021
MluNI	TGGCCA	1 cut(s)	1021
MlyI	GAGTC	2 cut(s)	155, 354
MmeI	TCCRAC	3 cut(s)	42, 102, 702
MnlI	CCTC	9 cut(s)	209, 217, 379, 382, 511, 604, 691, 984, 1036
Mox20I	TGGCCA	1 cut(s)	1021
Mph1103I	ATGCAT	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	1021
MseI	TTAA	4 cut(s)	381, 468, 755, 864
MslI	CAYNNNNRTG	1 cut(s)	991
Msp20I	TGGCCA	1 cut(s)	1021
MspR9I	CCNGG	1 cut(s)	558
MunI	CAATTG	1 cut(s)	876
Mva1269I	GAATGC	3 cut(s)	44, 81, 537
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	1 cut(s)	1035
MwoI	GCNNNNNNNGC	2 cut(s)	296, 774
NdeII	GATC	4 cut(s)	7, 16, 829, 983
NlaIII	CATG	8 cut(s)	26, 113, 284, 623, 634, 670, 767, 802
NlaIV	GGNNCC	4 cut(s)	220, 228, 615, 831
NsiI	ATGCAT	1 cut(s)	103
NspI	RCATGY	2 cut(s)	26, 623
OliI	CACNNNNGTG	1 cut(s)	991
PaeR7I	CTCGAG	1 cut(s)	143
PciI	ACATGT	1 cut(s)	619
PctI	GAATGC	3 cut(s)	44, 81, 537
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	128, 346
PkrI	GCNGC	5 cut(s)	255, 487, 568, 790, 1037
PleI	GAGTC	2 cut(s)	154, 354
PpsI	GAGTC	2 cut(s)	154, 354
Ppu21I	YACGTR	1 cut(s)	1025
PpuMI	RGGWCCY	1 cut(s)	613
PscI	ACATGT	1 cut(s)	619
PsiI	TTATAA	1 cut(s)	579
Psp5II	RGGWCCY	1 cut(s)	613
Psp6I	CCWGG	1 cut(s)	556
PspFI	CCCAGC	1 cut(s)	824
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	4 cut(s)	220, 228, 615, 831
PspPI	GGNCC	2 cut(s)	53, 613
PspPPI	RGGWCCY	1 cut(s)	613
PspXI	VCTCGAGB	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	829
RsaI	GTAC	4 cut(s)	220, 624, 909, 1073
RsaNI	GTAC	4 cut(s)	219, 623, 908, 1072
RseI	CAYNNNNRTG	1 cut(s)	991
SaqAI	TTAA	4 cut(s)	381, 468, 755, 864
SatI	GCNGC	5 cut(s)	254, 486, 567, 789, 1036
Sau3AI	GATC	4 cut(s)	7, 16, 829, 983
Sau96I	GGNCC	2 cut(s)	53, 613
ScaI	AGTACT	1 cut(s)	909
SchI	GAGTC	2 cut(s)	155, 354
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	1 cut(s)	969
SetI	ASST	7 cut(s)	220, 258, 358, 503, 598, 995, 1027
SfaNI	GCATC	1 cut(s)	299
SfcI	CTRYAG	1 cut(s)	428
Sfr274I	CTCGAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	613
SlaI	CTCGAG	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	991
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SsiI	CCGC	2 cut(s)	567, 1035
StyD4I	CCNGG	1 cut(s)	556
TaaI	ACNGT	3 cut(s)	120, 481, 1096
TaiI	ACGT	1 cut(s)	1027
TaqI	TCGA	2 cut(s)	144, 194
TatI	WGTACW	3 cut(s)	622, 907, 1071
TauI	GCSGC	2 cut(s)	569, 1038
TfiI	GAWTC	2 cut(s)	128, 346
Tru1I	TTAA	4 cut(s)	381, 468, 755, 864
Tru9I	TTAA	4 cut(s)	381, 468, 755, 864
TscAI	CASTG	3 cut(s)	484, 847, 993
TseI	GCWGC	3 cut(s)	253, 485, 788
TspDTI	ATGAA	4 cut(s)	126, 162, 533, 925
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	3 cut(s)	484, 847, 993
VpaK11BI	GGWCC	1 cut(s)	613
XapI	RAATTY	4 cut(s)	190, 643, 976, 1047
XceI	RCATGY	2 cut(s)	26, 623
XhoI	CTCGAG	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	414
ZrmI	AGTACT	1 cut(s)	909
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.