RLG00000001991

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001762
Physical Location & Seq
Forward (+)
24034540 .. 24040712
6173 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001991

Sequence Viewer

Length: 1380 bp
ATGGATATGGCCGTCGGTGATAACTTGTTGGTGAATTCTAAGCCGATGATGGAGGAGCCACACGTCGACTACCGAGTTTATCCGATCCCCGATACAGTCCCAGATGAAGATTTGGAAATTTTTTTTCAGAACACGAAATCGAAATTAGAAAAGTATGGCATGACAATCACTCTGAATGCGCGAACCCTCACATTCGTACAAGGGGTAAGTAAGTGGAACCCTGGCCCTGCCTTGAACAAATATGGCAAGTTTGAAATCACCACTTTCACTGTGCCCTTCCCCGAAAATCGAGCAACAAAGTTGAAACATGTTTGGCCCGACGTCGAAGAATTCTTATATGAGTTTGCCATTTCATGCAATCTCAATTTGGCTGAGTGTTCCATGCAAGTCTCAACAACCACATTTCTTGATAAACCGTATCTCCTTGACAGAGCTAGACATCTCCTTCAACTGTTGTCCACAAGTCTTGGGGAATATCTTAAACGATGGGAATGCCTCTTCTACTCCGTAAAGGATCCACATGCCAAGCACATGGAGATGGTGAAGTCTGCCCCTTTTTTTCTCAGAGATAGCATGCCTGAAGTCTGCTCTCTCTATACATTACTCCATGAAAAACGAGATTTGTTATCATTATTACTATTACTATTATTGTTATTTTATAAAATCTACTGTACACTAAATCAGCTATGTACTAAGGAGCCAGATATCATTGACAAGGCTTTGCAGCTACTTGAACTTCTGTCAACAACTCATGTTCCGGTATCTCTGTGTCCGAATTGCTTGTTACTGAGTGGATATTATAATTCTGCATCACGAGGGCTGGAAAATATTGAAGATCCACACGTCAAGCACATGGAGATGGAAAAATCGGGGTCGTCGTTGCACATGCTTGAAGTCAGCTCCTTCTGTACATTCTTTTCGCGACTACTAGCAACTCAGTTGTATGATAATTGGTCAATTGTGGAATCGTGTTTACAAAAGCATGACATTTCGTGCAAACTGGTTGCGGCCGAGTTTTACATGACAGTGTCTGTAACCACAAAGGCCGGGGAATCAAATATTAGTGACAAGATTTTGGACGTTCTTAAACTTTTATCAGTTGGTATTCCACCTTCTAAGGTACAATGTTTCATGTATGACATAATAATCTTTGTGTTTCTTAGACTTTGGAAAGGTTTAGAGGAGCAATTTGATCAAGTGGTTTGGCCACGAGTTGATCTCGGTTTAGAGGAAATGGCAAGAGTCATGAACTGTGATGTCATGACTAGTCCAAATGTTATTACTGTCTGCGGTCCGCATGAACAAATGGATGAATTCAGCAAGTTTGTGCAACATTGCTTTGATTCGAGGCGTCAACCAACTTGTGCAATGGGAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

460

Amino Acids

52.69

Weight (kDa)

5.44

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 88 - 155 4.4e-10 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 660, 801
AatII GACGTC 1 cut(s) 324
AccI GTMKAC 1 cut(s) 66
AccII CGCG 2 cut(s) 181, 922
AciI CCGC 3 cut(s) 1007, 1290, 1295
AclWI GGATC 4 cut(s) 79, 509, 522, 830
AcoI YGGCCR 3 cut(s) 9, 1008, 1205
AcsI RAATTY 4 cut(s) 34, 117, 329, 1313
AcuI CTGAAG 1 cut(s) 600
AcyI GRCGYC 2 cut(s) 321, 1351
AfaI GTAC 5 cut(s) 198, 673, 691, 910, 1122
AflIII ACRYGT 3 cut(s) 61, 307, 841
AgsI TTSAA 7 cut(s) 235, 254, 304, 449, 734, 833, 893
AhlI ACTAGT 1 cut(s) 1265
AjiI CACGTC 2 cut(s) 64, 844
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 4 cut(s) 434, 685, 727, 900
AluI AGCT 4 cut(s) 434, 685, 727, 900
Alw26I GTCTC 1 cut(s) 394
AlwI GGATC 4 cut(s) 79, 509, 522, 830
AlwNI CAGNNNCTG 1 cut(s) 1031
AoxI GGCC 6 cut(s) 9, 223, 314, 1008, 1044, 1205
ApeKI GCWGC 1 cut(s) 724
ApoI RAATTY 4 cut(s) 34, 117, 329, 1313
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 3 cut(s) 224, 315, 1292
AsuC2I CCSGG 1 cut(s) 1048
AsuHPI GGTGA 4 cut(s) 29, 43, 250, 553
AvaII GGWCC 1 cut(s) 1292
BaeGI GKGCMC 1 cut(s) 276
BalI TGGCCA 1 cut(s) 1207
BamHI GGATCC 1 cut(s) 514
BarI GAAGNNNNNNTAC 2 cut(s) 1096, 1128
BauI CACGAG 2 cut(s) 813, 1209
BbvI GCAGC 1 cut(s) 736
BccI CCATC 4 cut(s) 43, 480, 532, 853
BcgI CGANNNNNNTGC 2 cut(s) 474, 508
BciT130I CCWGG 1 cut(s) 222
BclI TGATCA 1 cut(s) 1192
BcnI CCSGG 1 cut(s) 1048
BcoDI GTCTC 1 cut(s) 394
BcuI ACTAGT 1 cut(s) 1265
BfaI CTAG 3 cut(s) 435, 929, 1266
BisI GCNGC 2 cut(s) 725, 1008
BlsI GCNGC 2 cut(s) 726, 1009
Bme1390I CCNGG 2 cut(s) 222, 1048
Bme18I GGWCC 1 cut(s) 1292
BmgBI CACGTC 2 cut(s) 64, 844
BmgT120I GGNCC 3 cut(s) 224, 315, 1292
BmiI GGNNCC 4 cut(s) 57, 218, 516, 699
BmrFI CCNGG 2 cut(s) 222, 1048
BmsI GCATC 1 cut(s) 818
BplI GAGNNNNNCTC 2 cut(s) 1203, 1235
BpuMI CCSGG 1 cut(s) 1048
BsaHI GRCGYC 2 cut(s) 321, 1351
BsaJI CCNNGG 2 cut(s) 220, 1047
BsaWI WCCGGW 1 cut(s) 757
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bse1I ACTGG 1 cut(s) 1005
Bse3DI GCAATG 2 cut(s) 1333, 1374
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 220, 1047
BseGI GGATG 1 cut(s) 1315
BseMI GCAATG 2 cut(s) 1333, 1374
BseMII CTCAG 4 cut(s) 363, 577, 779, 950
BseNI ACTGG 1 cut(s) 1005
BseRI GAGGAG 2 cut(s) 68, 1196
BseSI GKGCMC 1 cut(s) 276
BseX3I CGGCCG 1 cut(s) 1008
BseXI GCAGC 1 cut(s) 736
Bsh1236I CGCG 2 cut(s) 181, 922
Bsh1285I CGRYCG 1 cut(s) 1011
BshFI GGCC 6 cut(s) 11, 225, 316, 1010, 1046, 1207
BsiEI CGRYCG 1 cut(s) 1011
BsiSI CCGG 2 cut(s) 758, 1047
BslFI GGGAC 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 394
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 2 cut(s) 181, 497
BsnI GGCC 6 cut(s) 11, 225, 316, 1010, 1046, 1207
Bsp1286I GDGCHC 1 cut(s) 276
Bsp1407I TGTACA 2 cut(s) 671, 908
Bsp143I GATC 5 cut(s) 84, 514, 835, 1192, 1216
Bsp68I TCGCGA 1 cut(s) 922
BspACI CCGC 3 cut(s) 1007, 1290, 1295
BspANI GGCC 6 cut(s) 11, 225, 316, 1010, 1046, 1207
BspCNI CTCAG 4 cut(s) 364, 576, 780, 949
BspFNI CGCG 2 cut(s) 181, 922
BspHI TCATGA 2 cut(s) 1245, 1260
BspLI GGNNCC 4 cut(s) 57, 218, 516, 699
BspPI GGATC 4 cut(s) 79, 509, 522, 830
BsrDI GCAATG 2 cut(s) 1333, 1374
BsrGI TGTACA 2 cut(s) 671, 908
BsrI ACTGG 1 cut(s) 1005
BssECI CCNNGG 2 cut(s) 220, 1047
BssMI GATC 5 cut(s) 84, 514, 835, 1192, 1216
BssNI GRCGYC 2 cut(s) 321, 1351
BssSI CACGAG 2 cut(s) 813, 1209
Bst2BI CACGAG 2 cut(s) 813, 1209
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 8 cut(s) 97, 271, 417, 453, 671, 1027, 1253, 1285
Bst6I CTCTTC 1 cut(s) 503
BstACI GRCGYC 2 cut(s) 321, 1351
BstAUI TGTACA 2 cut(s) 671, 908
BstC8I GCNNGC 1 cut(s) 575
BstDEI CTNAG 8 cut(s) 39, 372, 563, 693, 788, 936, 1116, 1160
BstF5I GGATG 1 cut(s) 1315
BstFNI CGCG 2 cut(s) 181, 922
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 5 cut(s) 87, 517, 838, 1195, 1219
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 5 cut(s) 84, 514, 835, 1192, 1216
BstMCI CGRYCG 1 cut(s) 1011
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 4 cut(s) 311, 524, 577, 889
BstSCI CCNGG 2 cut(s) 220, 1046
BstSLI GKGCMC 1 cut(s) 276
BstUI CGCG 2 cut(s) 181, 922
BstV1I GCAGC 1 cut(s) 736
BstX2I RGATCY 2 cut(s) 514, 835
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 2 cut(s) 514, 835
BstZI CGGCCG 1 cut(s) 1008
BsuRI GGCC 6 cut(s) 11, 225, 316, 1010, 1046, 1207
BtrI CACGTC 2 cut(s) 64, 844
BtsCI GGATG 1 cut(s) 1315
BtsIMutI CAGTG 2 cut(s) 267, 1032
BtuMI TCGCGA 1 cut(s) 922
Cac8I GCNNGC 1 cut(s) 575
CaiI CAGNNNCTG 1 cut(s) 1031
CciI TCATGA 2 cut(s) 1245, 1260
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 3 cut(s) 224, 315, 1292
CpoI CGGWCCG 1 cut(s) 1292
CseI GACGC 1 cut(s) 1340
Csp6I GTAC 5 cut(s) 197, 672, 690, 909, 1121
CspCI CAANNNNNGTGG 4 cut(s) 388, 423, 448, 483
CspI CGGWCCG 1 cut(s) 1292
CviQI GTAC 5 cut(s) 197, 672, 690, 909, 1121
DdeI CTNAG 8 cut(s) 39, 372, 563, 693, 788, 936, 1116, 1160
DpnI GATC 5 cut(s) 86, 516, 837, 1194, 1218
DpnII GATC 5 cut(s) 84, 514, 835, 1192, 1216
EaeI YGGCCR 3 cut(s) 9, 1008, 1205
EagI CGGCCG 1 cut(s) 1008
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
EclXI CGGCCG 1 cut(s) 1008
Eco32I GATATC 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 1292
Eco52I CGGCCG 1 cut(s) 1008
Eco57I CTGAAG 1 cut(s) 600
EcoRI GAATTC 3 cut(s) 34, 329, 1313
EcoRII CCWGG 1 cut(s) 220
EcoRV GATATC 1 cut(s) 706
FaqI GGGAC 1 cut(s) 83
FbaI TGATCA 1 cut(s) 1192
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 725, 1008
FokI GGATG 1 cut(s) 1322
Fsp4HI GCNGC 2 cut(s) 725, 1008
FspBI CTAG 3 cut(s) 435, 929, 1266
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 725, 1008
HaeIII GGCC 6 cut(s) 11, 225, 316, 1010, 1046, 1207
HapII CCGG 2 cut(s) 758, 1047
HgaI GACGC 1 cut(s) 1340
HhaI GCGC 1 cut(s) 181
Hin1I GRCGYC 2 cut(s) 321, 1351
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HincII GTYRAC 3 cut(s) 67, 744, 1355
HindII GTYRAC 3 cut(s) 67, 744, 1355
HinfI GANTC 4 cut(s) 965, 1052, 1242, 1343
HpaII CCGG 2 cut(s) 758, 1047
HphI GGTGA 4 cut(s) 29, 43, 250, 553
Hpy166II GTNNAC 6 cut(s) 67, 459, 674, 744, 974, 1355
Hpy188I TCNGA 5 cut(s) 84, 129, 174, 566, 774
Hpy188III TCNNGA 5 cut(s) 407, 813, 921, 1246, 1261
Hpy8I GTNNAC 6 cut(s) 67, 459, 674, 744, 974, 1355
Hpy99I CGWCG 5 cut(s) 17, 68, 323, 326, 880
HpyAV CCTTC 4 cut(s) 286, 455, 913, 1122
HpyCH4III ACNGT 8 cut(s) 97, 271, 417, 453, 671, 1027, 1253, 1285
HpyCH4IV ACGT 4 cut(s) 63, 321, 843, 1080
HpyCH4V TGCA 8 cut(s) 357, 385, 724, 809, 883, 996, 1330, 1367
HpyF3I CTNAG 8 cut(s) 39, 372, 563, 693, 788, 936, 1116, 1160
HpySE526I ACGT 4 cut(s) 63, 321, 843, 1080
Hsp92I GRCGYC 2 cut(s) 321, 1351
HspAI GCGC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 1192
Kzo9I GATC 5 cut(s) 84, 514, 835, 1192, 1216
LmnI GCTCC 4 cut(s) 55, 697, 905, 1183
Lsp1109I GCAGC 1 cut(s) 736
LweI GCATC 1 cut(s) 818
MaeI CTAG 3 cut(s) 435, 929, 1266
MaeII ACGT 4 cut(s) 63, 321, 843, 1080
MaeIII GTNAC 3 cut(s) 783, 1033, 1064
MalI GATC 5 cut(s) 86, 516, 837, 1194, 1218
MboI GATC 5 cut(s) 84, 514, 835, 1192, 1216
MboII GAAGA 4 cut(s) 119, 338, 490, 845
MfeI CAATTG 1 cut(s) 957
MflI RGATCY 2 cut(s) 514, 835
MhlI GDGCHC 1 cut(s) 276
MlsI TGGCCA 1 cut(s) 1207
MluNI TGGCCA 1 cut(s) 1207
MlyI GAGTC 1 cut(s) 1251
MnlI CCTC 7 cut(s) 46, 197, 506, 809, 1174, 1222, 1341
Mox20I TGGCCA 1 cut(s) 1207
MscI TGGCCA 1 cut(s) 1207
MseI TTAA 2 cut(s) 480, 1086
MslI CAYNNNNRTG 3 cut(s) 536, 857, 1025
Msp20I TGGCCA 1 cut(s) 1207
MspI CCGG 2 cut(s) 758, 1047
MspR9I CCNGG 2 cut(s) 222, 1048
MunI CAATTG 1 cut(s) 957
Mva1269I GAATGC 2 cut(s) 181, 497
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 2 cut(s) 181, 922
NciI CCSGG 1 cut(s) 1048
NdeII GATC 5 cut(s) 84, 514, 835, 1192, 1216
NlaIV GGNNCC 4 cut(s) 57, 218, 516, 699
NmeAIII GCCGAG 1 cut(s) 1036
NmuCI GTSAC 1 cut(s) 1064
NruI TCGCGA 1 cut(s) 922
NspI RCATGY 4 cut(s) 311, 524, 577, 889
PaeI GCATGC 1 cut(s) 577
PagI TCATGA 2 cut(s) 1245, 1260
PciI ACATGT 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 875
PctI GAATGC 2 cut(s) 181, 497
PfeI GAWTC 3 cut(s) 965, 1052, 1343
PflFI GACNNNGTC 1 cut(s) 1027
PkrI GCNGC 2 cut(s) 726, 1009
PleI GAGTC 1 cut(s) 1250
PpsI GAGTC 1 cut(s) 1250
PscI ACATGT 1 cut(s) 307
PsiI TTATAA 2 cut(s) 660, 801
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 4 cut(s) 57, 218, 516, 699
PspPI GGNCC 3 cut(s) 224, 315, 1292
PstNI CAGNNNCTG 1 cut(s) 1031
PsuI RGATCY 2 cut(s) 514, 835
PsyI GACNNNGTC 1 cut(s) 1027
RruI TCGCGA 1 cut(s) 922
RsaI GTAC 5 cut(s) 198, 673, 691, 910, 1122
RsaNI GTAC 5 cut(s) 197, 672, 690, 909, 1121
RseI CAYNNNNRTG 3 cut(s) 536, 857, 1025
Rsr2I CGGWCCG 1 cut(s) 1292
RsrII CGGWCCG 1 cut(s) 1292
SalI GTCGAC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 480, 1086
SatI GCNGC 2 cut(s) 725, 1008
Sau3AI GATC 5 cut(s) 84, 514, 835, 1192, 1216
Sau96I GGNCC 3 cut(s) 224, 315, 1292
SchI GAGTC 1 cut(s) 1251
ScrFI CCNGG 2 cut(s) 222, 1048
SduI GDGCHC 1 cut(s) 276
SfaNI GCATC 1 cut(s) 818
SinI GGWCC 1 cut(s) 1292
SmiMI CAYNNNNRTG 3 cut(s) 536, 857, 1025
SpeI ACTAGT 1 cut(s) 1265
SphI GCATGC 1 cut(s) 577
SsiI CCGC 3 cut(s) 1007, 1290, 1295
SspI AATATT 2 cut(s) 829, 1060
SspMI CTAG 3 cut(s) 435, 929, 1266
StyD4I CCNGG 2 cut(s) 220, 1046
TaaI ACNGT 8 cut(s) 97, 271, 417, 453, 671, 1027, 1253, 1285
TaiI ACGT 4 cut(s) 66, 324, 846, 1083
TaqI TCGA 5 cut(s) 66, 140, 289, 324, 1346
TatI WGTACW 3 cut(s) 671, 689, 908
TauI GCSGC 1 cut(s) 1010
TfiI GAWTC 3 cut(s) 965, 1052, 1343
Tru1I TTAA 2 cut(s) 480, 1086
Tru9I TTAA 2 cut(s) 480, 1086
TscAI CASTG 2 cut(s) 274, 1032
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 1 cut(s) 724
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 7 cut(s) 120, 342, 624, 1120, 1262, 1314, 1326
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 2 cut(s) 274, 1032
Tth111I GACNNNGTC 1 cut(s) 1027
VpaK11BI GGWCC 1 cut(s) 1292
XapI RAATTY 4 cut(s) 34, 117, 329, 1313
XceI RCATGY 4 cut(s) 311, 524, 577, 889
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 3 cut(s) 435, 929, 1266
ZraI GACGTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.