Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Reverse (-)

43339032 .. 43342937

Gene Structure 3906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGCATCAATCGACGGATGATCTTGAGGATCCACATGCCAAGCACATGGAGATGGTGTGGTCTGCCCCTTTTTTTCTCAGAGATAGCATGCCTGAAGTCTGCTCTCTCTATATGTTAGTCCATGAAGAACGAGCAGCAAAGTTGCTAGAAGCTTCGTCGATGCTGGAGTCTTCCCTAAGTAACTATGGCATTTCATGTACTCTGGAGAAGGATTCCATGGCATTCACAACAACGAGATGTACTAAGGAGCCAGATATCATTGACAAGGCTTTCCAGCTACTTGAACTTTTGTCAACAACTCATGTTCCAGTATCTCTGGCAATAGAAATATTGGATGGTAGTGTGGAAACTCGCCTAATTAAAATTGGGAATCAAGATGGTGGGATTTGCTCAGACTTTGGGATCAGTGAGGAGGAATACCTTATACGATGGGAATGTCTTCGCCATTCCCTACATGCAGTTGCCGAAACGGCGGAATGTAATGTATTTCTCAATTATTACACTGTTGCTGCTGTGGGGAATACTTCACTAGAATTGTTCAAGCAGTCAGTGGTAAACTGCTTTCTTCATAATGTGTGTGCTGGGACTGTCTGCATGGATTATAATTCTGCATCACGAGGGCTGGAAAATATTGAAGATCCACACGTCAAGCACATGGAGATGGAAAAATCGGGGTCGTCGTTGCACATGCTTGAATTGTATGATGATTGGTCGATTGTGGAATCGTGCTTACAAAAGCATGACATTTCGTGCAAACTGGTTGCGGCCGAGTTTTACATGACAGTGTCTGTAACCATAAAGGCCGGGGAATCAAATATTAGTGACAAGATTTTGGACGTTCTTAAAATTTTGTCGATCAGTTGGTATTCCACCTTCTACGGTACAATGGCAATTCAAGTGCTGGAAGGCAGTATGTACTATGACTTCATCCAGACAGGGTCTCAGTATGGCGGGTTTTGCTTAAAATATGGGATCACCAAGGTTGGTTGGCCACGAGTTGAACACGGTTTAGAGGAAATGGCAACAGTCATGAACTGTGATGTCGGGACTAGTGTAAGGAATACTGTTCCCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

358

Amino Acids

40.16

Weight (kDa)

4.79

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
AciI	CCGC	3 cut(s)	473, 764, 951
AclWI	GGATC	5 cut(s)	23, 36, 410, 632, 980
AcoI	YGGCCR	2 cut(s)	765, 989
AcsI	RAATTY	1 cut(s)	846
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	4 cut(s)	199, 241, 883, 917
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	6 cut(s)	284, 541, 635, 695, 896, 1001
AhlI	ACTAGT	1 cut(s)	1049
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	1 cut(s)	1070
AluBI	AGCT	2 cut(s)	152, 277
AluI	AGCT	2 cut(s)	152, 277
Alw26I	GTCTC	1 cut(s)	945
AlwI	GGATC	5 cut(s)	23, 36, 410, 632, 980
AlwNI	CAGNNNCTG	1 cut(s)	788
AoxI	GGCC	3 cut(s)	765, 801, 989
ApeKI	GCWGC	2 cut(s)	134, 509
ApoI	RAATTY	1 cut(s)	846
Asp700I	GAANNNNTTC	1 cut(s)	438
AsuC2I	CCSGG	1 cut(s)	805
AsuHPI	GGTGA	1 cut(s)	967
BalI	TGGCCA	1 cut(s)	991
BamHI	GGATCC	1 cut(s)	28
BarI	GAAGNNNNNNTAC	4 cut(s)	857, 889, 908, 940
BauI	CACGAG	2 cut(s)	615, 993
BbsI	GAAGAC	2 cut(s)	162, 431
BbvI	GCAGC	2 cut(s)	146, 496
BccI	CCATC	5 cut(s)	46, 329, 371, 423, 655
BceAI	ACGGC	1 cut(s)	486
BciT130I	CCWGG	1 cut(s)	1072
BcnI	CCSGG	1 cut(s)	805
BcoDI	GTCTC	1 cut(s)	945
BcuI	ACTAGT	1 cut(s)	1049
BfaI	CTAG	3 cut(s)	146, 530, 1050
BglI	GCCNNNNNGGC	1 cut(s)	470
BisI	GCNGC	3 cut(s)	135, 510, 765
BlsI	GCNGC	3 cut(s)	136, 511, 766
Bme1390I	CCNGG	2 cut(s)	805, 1072
BmgBI	CACGTC	1 cut(s)	646
BmiI	GGNNCC	2 cut(s)	30, 249
BmrFI	CCNGG	2 cut(s)	805, 1072
BmsI	GCATC	3 cut(s)	13, 150, 620
BpiI	GAAGAC	2 cut(s)	162, 431
BpmI	CTGGAG	2 cut(s)	185, 224
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	805
BsaI	GGTCTC	1 cut(s)	945
BsaJI	CCNNGG	4 cut(s)	216, 804, 978, 1070
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bse1I	ACTGG	2 cut(s)	308, 762
BseBI	CCWGG	1 cut(s)	1072
BseDI	CCNNGG	4 cut(s)	216, 804, 978, 1070
BseGI	GGATG	3 cut(s)	22, 340, 927
BseMII	CTCAG	3 cut(s)	91, 405, 956
BseNI	ACTGG	2 cut(s)	308, 762
BseRI	GAGGAG	1 cut(s)	425
BseX3I	CGGCCG	1 cut(s)	765
BseXI	GCAGC	2 cut(s)	146, 496
BseYI	CCCAGC	1 cut(s)	581
Bsh1285I	CGRYCG	1 cut(s)	768
BshFI	GGCC	3 cut(s)	767, 803, 991
BsiEI	CGRYCG	1 cut(s)	768
BsiSI	CCGG	1 cut(s)	804
BslFI	GGGAC	2 cut(s)	598, 1060
BsmAI	GTCTC	1 cut(s)	945
BsmFI	GGGAC	2 cut(s)	598, 1060
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	767, 803, 991
Bso31I	GGTCTC	1 cut(s)	945
Bsp143I	GATC	6 cut(s)	19, 28, 402, 637, 855, 972
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	3 cut(s)	473, 764, 951
BspANI	GGCC	3 cut(s)	767, 803, 991
BspCNI	CTCAG	3 cut(s)	90, 404, 955
BspHI	TCATGA	1 cut(s)	1029
BspLI	GGNNCC	2 cut(s)	30, 249
BspPI	GGATC	5 cut(s)	23, 36, 410, 632, 980
BspTNI	GGTCTC	1 cut(s)	945
BsrI	ACTGG	2 cut(s)	308, 762
BssECI	CCNNGG	4 cut(s)	216, 804, 978, 1070
BssMI	GATC	6 cut(s)	19, 28, 402, 637, 855, 972
BssSI	CACGAG	2 cut(s)	615, 993
BssT1I	CCWWGG	2 cut(s)	216, 978
Bst2BI	CACGAG	2 cut(s)	615, 993
Bst2UI	CCWGG	1 cut(s)	1072
Bst4CI	ACNGT	8 cut(s)	505, 589, 784, 881, 1007, 1027, 1037, 1066
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	5 cut(s)	77, 176, 243, 391, 942
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	22, 340, 927
BstKTI	GATC	6 cut(s)	22, 31, 405, 640, 858, 975
BstMAI	GTCTC	1 cut(s)	945
BstMBI	GATC	6 cut(s)	19, 28, 402, 637, 855, 972
BstMCI	CGRYCG	1 cut(s)	768
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 957
BstNI	CCWGG	1 cut(s)	1072
BstNSI	RCATGY	4 cut(s)	38, 91, 458, 691
BstSCI	CCNGG	2 cut(s)	803, 1070
BstV1I	GCAGC	2 cut(s)	146, 496
BstV2I	GAAGAC	2 cut(s)	162, 431
BstX2I	RGATCY	2 cut(s)	28, 637
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	2 cut(s)	28, 637
BstZI	CGGCCG	1 cut(s)	765
BsuRI	GGCC	3 cut(s)	767, 803, 991
BtgI	CCRYGG	1 cut(s)	216
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	3 cut(s)	22, 340, 927
BtsIMutI	CAGTG	4 cut(s)	412, 501, 555, 789
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	788
CciI	TCATGA	1 cut(s)	1029
Csp6I	GTAC	4 cut(s)	198, 240, 882, 916
CviJI	RGCY	8 cut(s)	152, 250, 269, 277, 622, 767, 803, 991
CviKI_1	RGCY	8 cut(s)	152, 250, 269, 277, 622, 767, 803, 991
CviQI	GTAC	4 cut(s)	198, 240, 882, 916
DdeI	CTNAG	5 cut(s)	77, 176, 243, 391, 942
DpnI	GATC	6 cut(s)	21, 30, 404, 639, 857, 974
DpnII	GATC	6 cut(s)	19, 28, 402, 637, 855, 972
EaeI	YGGCCR	2 cut(s)	765, 989
EagI	CGGCCG	1 cut(s)	765
EciI	GGCGGA	1 cut(s)	488
EclXI	CGGCCG	1 cut(s)	765
Eco130I	CCWWGG	2 cut(s)	216, 978
Eco31I	GGTCTC	1 cut(s)	945
Eco32I	GATATC	1 cut(s)	256
Eco52I	CGGCCG	1 cut(s)	765
Eco57I	CTGAAG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	1070
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	216, 978
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	216, 978
FaqI	GGGAC	2 cut(s)	598, 1060
FauI	CCCGC	1 cut(s)	944
Fnu4HI	GCNGC	3 cut(s)	135, 510, 765
FokI	GGATG	3 cut(s)	29, 347, 914
Fsp4HI	GCNGC	3 cut(s)	135, 510, 765
FspBI	CTAG	3 cut(s)	146, 530, 1050
GluI	GCNGC	3 cut(s)	135, 510, 765
GsaI	CCCAGC	1 cut(s)	585
GsuI	CTGGAG	2 cut(s)	185, 224
HaeIII	GGCC	3 cut(s)	767, 803, 991
HapII	CCGG	1 cut(s)	804
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	5 cut(s)	167, 212, 370, 722, 809
HpaII	CCGG	1 cut(s)	804
HphI	GGTGA	1 cut(s)	967
Hpy166II	GTNNAC	2 cut(s)	294, 556
Hpy188I	TCNGA	2 cut(s)	80, 394
Hpy188III	TCNNGA	7 cut(s)	23, 203, 374, 615, 931, 1030, 1045
Hpy8I	GTNNAC	2 cut(s)	294, 556
Hpy99I	CGWCG	3 cut(s)	16, 160, 682
HpyAV	CCTTC	3 cut(s)	202, 883, 899
HpyCH4III	ACNGT	8 cut(s)	505, 589, 784, 881, 1007, 1027, 1037, 1066
HpyCH4IV	ACGT	2 cut(s)	645, 837
HpyCH4V	TGCA	6 cut(s)	4, 458, 594, 611, 685, 753
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 957
HpyF3I	CTNAG	5 cut(s)	77, 176, 243, 391, 942
HpySE526I	ACGT	2 cut(s)	645, 837
Kzo9I	GATC	6 cut(s)	19, 28, 402, 637, 855, 972
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	2 cut(s)	146, 496
LweI	GCATC	3 cut(s)	13, 150, 620
MaeI	CTAG	3 cut(s)	146, 530, 1050
MaeII	ACGT	2 cut(s)	645, 837
MaeIII	GTNAC	3 cut(s)	179, 790, 821
MalI	GATC	6 cut(s)	21, 30, 404, 639, 857, 974
MboI	GATC	6 cut(s)	19, 28, 402, 637, 855, 972
MboII	GAAGA	5 cut(s)	137, 162, 431, 557, 647
MflI	RGATCY	2 cut(s)	28, 637
MlsI	TGGCCA	1 cut(s)	991
MluCI	AATT	8 cut(s)	357, 363, 493, 533, 604, 695, 846, 891
MluNI	TGGCCA	1 cut(s)	991
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	19, 403, 406, 611, 1006
Mox20I	TGGCCA	1 cut(s)	991
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	991
MseI	TTAA	3 cut(s)	360, 843, 962
MslI	CAYNNNNRTG	3 cut(s)	50, 659, 782
Msp20I	TGGCCA	1 cut(s)	991
MspI	CCGG	1 cut(s)	804
MspR9I	CCNGG	2 cut(s)	805, 1072
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	1072
MwoI	GCNNNNNNNGC	2 cut(s)	470, 957
NciI	CCSGG	1 cut(s)	805
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	6 cut(s)	19, 28, 402, 637, 855, 972
NlaIV	GGNNCC	2 cut(s)	30, 249
NmeAIII	GCCGAG	1 cut(s)	793
NmuCI	GTSAC	1 cut(s)	821
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	4 cut(s)	38, 91, 458, 691
PaeI	GCATGC	1 cut(s)	91
PagI	TCATGA	1 cut(s)	1029
PcsI	WCGNNNNNNNCGW	1 cut(s)	677
PctI	GAATGC	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	4 cut(s)	212, 370, 722, 809
PflFI	GACNNNGTC	2 cut(s)	784, 937
PkrI	GCNGC	3 cut(s)	136, 511, 766
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PsiI	TTATAA	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	1070
PspFI	CCCAGC	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	1070
PspN4I	GGNNCC	2 cut(s)	30, 249
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	2 cut(s)	28, 637
PsyI	GACNNNGTC	2 cut(s)	784, 937
RsaI	GTAC	4 cut(s)	199, 241, 883, 917
RsaNI	GTAC	4 cut(s)	198, 240, 882, 916
RseI	CAYNNNNRTG	3 cut(s)	50, 659, 782
SaqAI	TTAA	3 cut(s)	360, 843, 962
SatI	GCNGC	3 cut(s)	135, 510, 765
Sau3AI	GATC	6 cut(s)	19, 28, 402, 637, 855, 972
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	805, 1072
SetI	ASST	7 cut(s)	154, 279, 423, 648, 840, 875, 984
SfaNI	GCATC	3 cut(s)	13, 150, 620
SmiMI	CAYNNNNRTG	3 cut(s)	50, 659, 782
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SpeI	ACTAGT	1 cut(s)	1049
SphI	GCATGC	1 cut(s)	91
Sse9I	AATT	8 cut(s)	357, 363, 493, 533, 604, 695, 846, 891
SsiI	CCGC	3 cut(s)	473, 764, 951
SspI	AATATT	3 cut(s)	330, 631, 817
SspMI	CTAG	3 cut(s)	146, 530, 1050
StyD4I	CCNGG	2 cut(s)	803, 1070
StyI	CCWWGG	2 cut(s)	216, 978
TaaI	ACNGT	8 cut(s)	505, 589, 784, 881, 1007, 1027, 1037, 1066
TaiI	ACGT	2 cut(s)	648, 840
TaqI	TCGA	4 cut(s)	11, 158, 713, 854
TasI	AATT	8 cut(s)	357, 363, 493, 533, 604, 695, 846, 891
TatI	WGTACW	3 cut(s)	197, 239, 915
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	4 cut(s)	212, 370, 722, 809
Tru1I	TTAA	3 cut(s)	360, 843, 962
Tru9I	TTAA	3 cut(s)	360, 843, 962
TscAI	CASTG	4 cut(s)	412, 508, 555, 789
TseFI	GTSAC	1 cut(s)	821
TseI	GCWGC	2 cut(s)	134, 509
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	5 cut(s)	138, 183, 557, 916, 1046
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	4 cut(s)	412, 508, 555, 789
Tth111I	GACNNNGTC	2 cut(s)	784, 937
XapI	RAATTY	1 cut(s)	846
XceI	RCATGY	4 cut(s)	38, 91, 458, 691
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	3 cut(s)	146, 530, 1050
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.