Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021207.1

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Forward (+)

17448 .. 18677

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021207.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atggagtcctctgggtatcacagtttagcctgtagtcctcctccggcggagccagagattttctacgtcatagacgatatgcttatagataactcagattgtgagggaccgaacgccgacgactactgtgagagtgtttatcccatcctcgatgaaattattcctcgggcggagctagagatagacgatgtgtacatagataattcagattgtgagggaccaaacgccgacgaccactgtgagagtgtttttcccatccccgatgaaatcccagattctaaattggaggaattttttctgcaaatgaaatcgaactatgaaccttgctatagagccacactggataaggctgcgcgaaccatcacattctctcaacaaccactcaagttgatgcctggtcctgctttgaacaaatatggcgttcttgaactcaacactttctttgtgtacttccccgaaaaacgagcaacaaagttgaaagccgcatggcctgagattgaattaaccttaaatgcctactccctttcatgcgatctgaatctggccaagtgttgcatgcaagtctcaacaaccacatcgcttaaggatccatgtatgattggaaaggctaggcatctccttaaactgttgtccacaagtcttgttccgccatatatggcgttagaaatattccaagaagttaggcaacaggaaaccatcaacataggatttcagcaggatgggatttgctcaaaatttgggatcaagaaggatgactatcttaaacgatgggaatgtctcttctgctcgcgaaaggcactttcaaaagcgacacattgtcatatctttcttgacgaaaacacttttaatgatgtgattgctgtggctgtgtgtaacgagccaagaaatcatctaagtccgcaagaagtcgatgtacatcttcagcatcaggtagagattcgtactcatcttcttcattccttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

321

Amino Acids

36.52

Weight (kDa)

4.76

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	355, 790
AciI	CCGC	5 cut(s)	47, 170, 483, 647, 899
AclWI	GGATC	3 cut(s)	581, 594, 749
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	2 cut(s)	290, 734
AcuI	CTGAAG	1 cut(s)	905
AfaI	GTAC	4 cut(s)	194, 449, 915, 943
AflII	CTTAAG	1 cut(s)	581
AgsI	TTSAA	5 cut(s)	409, 428, 478, 500, 804
AhdI	GACNNNNNGTC	1 cut(s)	816
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	2 cut(s)	568, 782
AlwI	GGATC	3 cut(s)	581, 594, 749
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	2 cut(s)	488, 543
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	2 cut(s)	290, 734
Asp700I	GAANNNNTTC	2 cut(s)	159, 294
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	3 cut(s)	107, 218, 398
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	3 cut(s)	107, 218, 398
BalI	TGGCCA	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	586
BarI	GAAGNNNNNNTAC	2 cut(s)	897, 929
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	6 cut(s)	152, 263, 368, 704, 713, 762
BciT130I	CCWGG	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	568, 782
BfaI	CTAG	3 cut(s)	176, 609, 964
BfmI	CTRYAG	2 cut(s)	31, 328
BfrI	CTTAAG	1 cut(s)	581
BisI	GCNGC	2 cut(s)	351, 483
BlsI	GCNGC	2 cut(s)	352, 484
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	3 cut(s)	107, 218, 398
BmeRI	GACNNNNNGTC	1 cut(s)	816
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	107, 218, 398
BmiI	GGNNCC	4 cut(s)	51, 108, 219, 588
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	3 cut(s)	381, 622, 934
BpuEI	CTTGAG	1 cut(s)	368
BsaBI	GATNNNNATC	3 cut(s)	537, 756, 915
BsaJI	CCNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	345
Bse8I	GATNNNNATC	3 cut(s)	537, 756, 915
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	4 cut(s)	144, 255, 724, 757
BseJI	GATNNNNATC	3 cut(s)	537, 756, 915
BseMII	CTCAG	2 cut(s)	108, 483
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	337
Bsh1236I	CGCG	2 cut(s)	355, 790
BshFI	GGCC	2 cut(s)	490, 545
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	2 cut(s)	120, 231
BsmAI	GTCTC	2 cut(s)	568, 782
BsmFI	GGGAC	2 cut(s)	120, 231
BsnI	GGCC	2 cut(s)	490, 545
BsoBI	CYCGRG	1 cut(s)	165
Bsp1407I	TGTACA	2 cut(s)	192, 913
Bsp143I	GATC	3 cut(s)	532, 586, 741
Bsp68I	TCGCGA	1 cut(s)	790
BspACI	CCGC	5 cut(s)	47, 170, 483, 647, 899
BspANI	GGCC	2 cut(s)	490, 545
BspCNI	CTCAG	2 cut(s)	107, 484
BspFNI	CGCG	2 cut(s)	355, 790
BspLI	GGNNCC	4 cut(s)	51, 108, 219, 588
BspPI	GGATC	3 cut(s)	581, 594, 749
BspTI	CTTAAG	1 cut(s)	581
BsrGI	TGTACA	2 cut(s)	192, 913
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	3 cut(s)	532, 586, 741
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	4 cut(s)	23, 128, 239, 627
Bst6I	CTCTTC	1 cut(s)	785
BstAFI	CTTAAG	1 cut(s)	581
BstAUI	TGTACA	2 cut(s)	192, 913
BstC8I	GCNNGC	2 cut(s)	557, 788
BstDEI	CTNAG	3 cut(s)	94, 492, 893
BstF5I	GGATG	4 cut(s)	144, 255, 724, 757
BstFNI	CGCG	2 cut(s)	355, 790
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	3 cut(s)	535, 589, 744
BstMAI	GTCTC	2 cut(s)	568, 782
BstMBI	GATC	3 cut(s)	532, 586, 741
BstNI	CCWGG	1 cut(s)	396
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	2 cut(s)	31, 328
BstUI	CGCG	2 cut(s)	355, 790
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	490, 545
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	4 cut(s)	144, 255, 724, 757
BtsIMutI	CAGTG	2 cut(s)	235, 338
BtuMI	TCGCGA	1 cut(s)	790
Cac8I	GCNNGC	2 cut(s)	557, 788
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	3 cut(s)	107, 218, 398
Csp6I	GTAC	4 cut(s)	193, 448, 914, 942
CspCI	CAANNNNNGTGG	4 cut(s)	369, 404, 622, 657
CviAII	CATG	4 cut(s)	486, 528, 556, 591
CviQI	GTAC	4 cut(s)	193, 448, 914, 942
DdeI	CTNAG	3 cut(s)	94, 492, 893
DpnI	GATC	3 cut(s)	534, 588, 743
DpnII	GATC	3 cut(s)	532, 586, 741
DriI	GACNNNNNGTC	1 cut(s)	816
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	785
Eam1105I	GACNNNNNGTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	785
EciI	GGCGGA	3 cut(s)	62, 185, 636
Eco47I	GGWCC	3 cut(s)	107, 218, 398
Eco57I	CTGAAG	1 cut(s)	905
Eco88I	CYCGRG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	394
FaeI	CATG	4 cut(s)	489, 531, 559, 594
FaqI	GGGAC	2 cut(s)	120, 231
FatI	CATG	4 cut(s)	485, 527, 555, 590
Fnu4HI	GCNGC	2 cut(s)	351, 483
FokI	GGATG	4 cut(s)	131, 242, 731, 764
Fsp4HI	GCNGC	2 cut(s)	351, 483
FspBI	CTAG	3 cut(s)	176, 609, 964
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	2 cut(s)	351, 483
HaeIII	GGCC	2 cut(s)	490, 545
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	4 cut(s)	489, 531, 559, 594
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HinfI	GANTC	4 cut(s)	5, 275, 538, 937
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	3 cut(s)	193, 448, 633
Hpy188I	TCNGA	3 cut(s)	97, 208, 537
Hpy188III	TCNNGA	4 cut(s)	425, 745, 789, 830
Hpy8I	GTNNAC	3 cut(s)	193, 448, 633
Hpy99I	CGWCG	2 cut(s)	122, 233
HpyAV	CCTTC	1 cut(s)	742
HpyCH4III	ACNGT	4 cut(s)	23, 128, 239, 627
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	301, 555, 559
HpyF3I	CTNAG	3 cut(s)	94, 492, 893
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	4 cut(s)	489, 531, 559, 594
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	3 cut(s)	532, 586, 741
LmnI	GCTCC	2 cut(s)	49, 172
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	3 cut(s)	381, 622, 934
MaeI	CTAG	3 cut(s)	176, 609, 964
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	872
MalI	GATC	3 cut(s)	534, 588, 743
MboI	GATC	3 cut(s)	532, 586, 741
MboII	GAAGA	4 cut(s)	772, 911, 941, 944
MflI	RGATCY	1 cut(s)	586
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	6 cut(s)	156, 202, 281, 290, 500, 734
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	8 cut(s)	19, 48, 51, 97, 158, 174, 208, 280
Mox20I	TGGCCA	1 cut(s)	545
MroXI	GAANNNNTTC	2 cut(s)	159, 294
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	6 cut(s)	503, 509, 582, 621, 762, 846
Msp20I	TGGCCA	1 cut(s)	545
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	2 cut(s)	355, 790
NdeII	GATC	3 cut(s)	532, 586, 741
NlaIII	CATG	4 cut(s)	489, 531, 559, 594
NlaIV	GGNNCC	4 cut(s)	51, 108, 219, 588
NruI	TCGCGA	1 cut(s)	790
NspI	RCATGY	1 cut(s)	559
PaeI	GCATGC	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PdmI	GAANNNNTTC	2 cut(s)	159, 294
PfeI	GAWTC	3 cut(s)	275, 538, 937
PkrI	GCNGC	2 cut(s)	352, 484
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	4 cut(s)	51, 108, 219, 588
PspPI	GGNCC	3 cut(s)	107, 218, 398
PsuI	RGATCY	1 cut(s)	586
RruI	TCGCGA	1 cut(s)	790
RsaI	GTAC	4 cut(s)	194, 449, 915, 943
RsaNI	GTAC	4 cut(s)	193, 448, 914, 942
SaqAI	TTAA	6 cut(s)	503, 509, 582, 621, 762, 846
SatI	GCNGC	2 cut(s)	351, 483
Sau3AI	GATC	3 cut(s)	532, 586, 741
Sau96I	GGNCC	3 cut(s)	107, 218, 398
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	396
SetI	ASST	5 cut(s)	69, 177, 325, 509, 933
SfaNI	GCATC	3 cut(s)	381, 622, 934
SfcI	CTRYAG	2 cut(s)	31, 328
SinI	GGWCC	3 cut(s)	107, 218, 398
SmlI	CTYRAG	2 cut(s)	383, 581
SmoI	CTYRAG	2 cut(s)	383, 581
SphI	GCATGC	1 cut(s)	559
Sse9I	AATT	6 cut(s)	156, 202, 281, 290, 500, 734
SsiI	CCGC	5 cut(s)	47, 170, 483, 647, 899
SspI	AATATT	1 cut(s)	669
SspMI	CTAG	3 cut(s)	176, 609, 964
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	4 cut(s)	23, 128, 239, 627
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	3 cut(s)	150, 311, 909
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	6 cut(s)	156, 202, 281, 290, 500, 734
TatI	WGTACW	3 cut(s)	192, 447, 913
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	3 cut(s)	275, 538, 937
Tru1I	TTAA	6 cut(s)	503, 509, 582, 621, 762, 846
Tru9I	TTAA	6 cut(s)	503, 509, 582, 621, 762, 846
TscAI	CASTG	2 cut(s)	242, 345
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	6 cut(s)	168, 279, 320, 333, 516, 944
TspRI	CASTG	2 cut(s)	242, 345
Vha464I	CTTAAG	1 cut(s)	581
VpaK11BI	GGWCC	3 cut(s)	107, 218, 398
XapI	RAATTY	2 cut(s)	290, 734
XceI	RCATGY	1 cut(s)	559
XmnI	GAANNNNTTC	2 cut(s)	159, 294
XspI	CTAG	3 cut(s)	176, 609, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.