Rorug07G0213900

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001762
Physical Location & Seq
Forward (+)
18913194 .. 18952421
39228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0213900.1

Sequence Viewer

Length: 444 bp
ATGGCGGCCGCTGTTCCAGCAAAGGAGTCCGTTCAGTGCTTCGGTCGCAAGAAGACCGCCGTGGCCGTCACCTACTGCAAGCGCGGCCGTGGCCTCATCAAGATCAACGGCTGCCCAATCGAGCTCGTCGAGCCGGAGATCCTCCGGTTCAAGGCCTACGAGCCCATCCTCCTCCTCGGACGACACCGTTTCGCCGATGTAGACATGCGCATCCGTGTGAAGGGCGGAGGCCACACTTCTCAGATCTACGCCATCCGTCAGAGCATCGCGAAGGCCCTGGTGGCTTTCTACCAGAAGTACGTGGATGAGCAGAGCAAGAAGGAGATTAAGGACATTCTGGTCAGGTACGACAGGACTCTCCTCGTCGCTGATCCCAGGCGCTGCGAGCCCAAGAAGTTCGGTGGCCGTGGTGCTCGTGCCAGGTTCCAGAAGTCTTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

147

Amino Acids

16.76

Weight (kDa)

10.16

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S9 PF00380 15 - 147 5.1e-38 Ribosomal protein S9/S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
Acc16I TGCGCA 1 cut(s) 209
AccI GTMKAC 1 cut(s) 201
AccII CGCG 2 cut(s) 84, 269
AciI CCGC 5 cut(s) 5, 9, 57, 84, 225
AclWI GGATC 2 cut(s) 133, 365
AcoI YGGCCR 4 cut(s) 6, 63, 85, 403
AfaI GTAC 2 cut(s) 299, 347
AfiI CCNNNNNNNGG 2 cut(s) 151, 220
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 3 cut(s) 276, 374, 419
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw21I GWGCWC 2 cut(s) 126, 415
AlwI GGATC 2 cut(s) 133, 365
AlwNI CAGNNNCTG 1 cut(s) 381
AoxI GGCC 8 cut(s) 6, 63, 85, 91, 153, 229, 273, 403
ApeKI GCWGC 2 cut(s) 111, 381
AspLEI GCGC 3 cut(s) 84, 210, 381
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 61
BanII GRGCYC 3 cut(s) 126, 165, 390
BauI CACGAG 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 126, 415
BbvI GCAGC 2 cut(s) 98, 368
BccI CCATC 2 cut(s) 173, 260
BceAI ACGGC 5 cut(s) 44, 50, 72, 124, 390
BciT130I CCWGG 3 cut(s) 278, 376, 421
BfoI RGCGCY 1 cut(s) 382
BglI GCCNNNNNGGC 1 cut(s) 281
BglII AGATCT 1 cut(s) 243
BisI GCNGC 5 cut(s) 6, 9, 85, 112, 382
BlsI GCNGC 5 cut(s) 7, 10, 86, 113, 383
Bme1390I CCNGG 3 cut(s) 278, 376, 421
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 425
BmrFI CCNGG 3 cut(s) 278, 376, 421
BmsI GCATC 2 cut(s) 219, 273
BpiI GAAGAC 1 cut(s) 59
BsaAI YACGTR 1 cut(s) 301
BsaJI CCNNGG 6 cut(s) 60, 88, 175, 276, 374, 406
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 220
BseBI CCWGG 3 cut(s) 278, 376, 421
BseDI CCNNGG 6 cut(s) 60, 88, 175, 276, 374, 406
BseGI GGATG 4 cut(s) 165, 210, 252, 310
BseLI CCNNNNNNNGG 2 cut(s) 151, 220
BseMII CTCAG 1 cut(s) 254
BseRI GAGGAG 3 cut(s) 161, 164, 350
BseX3I CGGCCG 2 cut(s) 6, 85
BseXI GCAGC 2 cut(s) 98, 368
Bsh1236I CGCG 2 cut(s) 84, 269
Bsh1285I CGRYCG 3 cut(s) 9, 46, 88
BshFI GGCC 8 cut(s) 8, 65, 87, 93, 155, 231, 275, 405
BsiEI CGRYCG 3 cut(s) 9, 46, 88
BsiHKAI GWGCWC 2 cut(s) 126, 415
BsiSI CCGG 2 cut(s) 134, 145
BslI CCNNNNNNNGG 2 cut(s) 151, 220
BsnI GGCC 8 cut(s) 8, 65, 87, 93, 155, 231, 275, 405
Bsp1286I GDGCHC 4 cut(s) 126, 165, 390, 415
Bsp143I GATC 4 cut(s) 102, 138, 243, 370
Bsp68I TCGCGA 1 cut(s) 269
BspACI CCGC 5 cut(s) 5, 9, 57, 84, 225
BspANI GGCC 8 cut(s) 8, 65, 87, 93, 155, 231, 275, 405
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 2 cut(s) 84, 269
BspLI GGNNCC 1 cut(s) 425
BspPI GGATC 2 cut(s) 133, 365
BssECI CCNNGG 6 cut(s) 60, 88, 175, 276, 374, 406
BssMI GATC 4 cut(s) 102, 138, 243, 370
BssSI CACGAG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 3 cut(s) 278, 376, 421
Bst4CI ACNGT 2 cut(s) 188, 440
BstBAI YACGTR 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 80, 386
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 3 cut(s) 60, 88, 406
BstF5I GGATG 4 cut(s) 165, 210, 252, 310
BstFNI CGCG 2 cut(s) 84, 269
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 3 cut(s) 84, 210, 381
BstKTI GATC 4 cut(s) 105, 141, 246, 373
BstMBI GATC 4 cut(s) 102, 138, 243, 370
BstMCI CGRYCG 3 cut(s) 9, 46, 88
BstMWI GCNNNNNNNGC 7 cut(s) 17, 45, 84, 90, 130, 281, 385
BstNI CCWGG 3 cut(s) 278, 376, 421
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 3 cut(s) 276, 374, 419
BstUI CGCG 2 cut(s) 84, 269
BstV1I GCAGC 2 cut(s) 98, 368
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 2 cut(s) 138, 243
BstYI RGATCY 2 cut(s) 138, 243
BstZI CGGCCG 2 cut(s) 6, 85
BsuRI GGCC 8 cut(s) 8, 65, 87, 93, 155, 231, 275, 405
BtgI CCRYGG 3 cut(s) 60, 88, 406
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 4 cut(s) 165, 210, 252, 310
BtsIMutI CAGTG 1 cut(s) 41
BtuMI TCGCGA 1 cut(s) 269
Cac8I GCNNGC 2 cut(s) 80, 386
CaiI CAGNNNCTG 1 cut(s) 381
CciNI GCGGCCGC 1 cut(s) 6
CfoI GCGC 3 cut(s) 84, 210, 381
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 2 cut(s) 298, 346
CviAII CATG 1 cut(s) 205
CviQI GTAC 2 cut(s) 298, 346
DdeI CTNAG 1 cut(s) 240
DpnI GATC 4 cut(s) 104, 140, 245, 372
DpnII GATC 4 cut(s) 102, 138, 243, 370
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 4 cut(s) 6, 63, 85, 403
EagI CGGCCG 2 cut(s) 6, 85
EciI GGCGGA 1 cut(s) 240
Ecl136II GAGCTC 1 cut(s) 124
EclXI CGGCCG 2 cut(s) 6, 85
Eco147I AGGCCT 1 cut(s) 155
Eco24I GRGCYC 3 cut(s) 126, 165, 390
Eco52I CGGCCG 2 cut(s) 6, 85
Eco53kI GAGCTC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 3 cut(s) 276, 374, 419
EcoT38I GRGCYC 3 cut(s) 126, 165, 390
FaeI CATG 1 cut(s) 208
FaiI YATR 1 cut(s) 206
FatI CATG 1 cut(s) 204
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 5 cut(s) 6, 9, 85, 112, 382
FokI GGATG 4 cut(s) 152, 197, 239, 317
FriOI GRGCYC 3 cut(s) 126, 165, 390
Fsp4HI GCNGC 5 cut(s) 6, 9, 85, 112, 382
FspAI RTGCGCAY 1 cut(s) 209
FspI TGCGCA 1 cut(s) 209
GlaI GCGC 3 cut(s) 83, 209, 380
GluI GCNGC 5 cut(s) 6, 9, 85, 112, 382
HaeII RGCGCY 1 cut(s) 382
HaeIII GGCC 8 cut(s) 8, 65, 87, 93, 155, 231, 275, 405
HapII CCGG 2 cut(s) 134, 145
HhaI GCGC 3 cut(s) 84, 210, 381
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 3 cut(s) 82, 208, 379
HinP1I GCGC 3 cut(s) 82, 208, 379
HinfI GANTC 2 cut(s) 26, 355
HpaII CCGG 2 cut(s) 134, 145
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 3 cut(s) 179, 243, 261
Hpy188III TCNNGA 3 cut(s) 100, 268, 427
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 2 cut(s) 131, 368
HpyAV CCTTC 3 cut(s) 214, 265, 313
HpyCH4III ACNGT 2 cut(s) 188, 440
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 45, 84, 90, 130, 281, 385
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 3 cut(s) 82, 208, 379
Kzo9I GATC 4 cut(s) 102, 138, 243, 370
Lsp1109I GCAGC 2 cut(s) 98, 368
LweI GCATC 2 cut(s) 219, 273
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 67
MalI GATC 4 cut(s) 104, 140, 245, 372
MboI GATC 4 cut(s) 102, 138, 243, 370
MboII GAAGA 1 cut(s) 64
MflI RGATCY 2 cut(s) 138, 243
MhlI GDGCHC 4 cut(s) 126, 165, 390, 415
MlyI GAGTC 2 cut(s) 35, 349
MnlI CCTC 7 cut(s) 104, 152, 179, 182, 185, 221, 371
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 2 cut(s) 134, 145
MspR9I CCNGG 3 cut(s) 278, 376, 421
MvaI CCWGG 3 cut(s) 278, 376, 421
MvnI CGCG 2 cut(s) 84, 269
MwoI GCNNNNNNNGC 7 cut(s) 17, 45, 84, 90, 130, 281, 385
NdeII GATC 4 cut(s) 102, 138, 243, 370
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 67
NotI GCGGCCGC 1 cut(s) 6
NruI TCGCGA 1 cut(s) 269
NsbI TGCGCA 1 cut(s) 209
NspI RCATGY 1 cut(s) 208
PceI AGGCCT 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PkrI GCNGC 5 cut(s) 7, 10, 86, 113, 383
PleI GAGTC 2 cut(s) 34, 349
PpsI GAGTC 2 cut(s) 34, 349
Ppu21I YACGTR 1 cut(s) 301
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 3 cut(s) 276, 374, 419
PspGI CCWGG 3 cut(s) 276, 374, 419
PspN4I GGNNCC 1 cut(s) 425
PspPI GGNCC 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 381
PsuI RGATCY 2 cut(s) 138, 243
RruI TCGCGA 1 cut(s) 269
RsaI GTAC 2 cut(s) 299, 347
RsaNI GTAC 2 cut(s) 298, 346
RseI CAYNNNNRTG 1 cut(s) 215
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 5 cut(s) 6, 9, 85, 112, 382
Sau3AI GATC 4 cut(s) 102, 138, 243, 370
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 2 cut(s) 35, 349
ScrFI CCNGG 3 cut(s) 278, 376, 421
SduI GDGCHC 4 cut(s) 126, 165, 390, 415
SetI ASST 5 cut(s) 74, 126, 303, 347, 425
SfaNI GCATC 2 cut(s) 219, 273
SmiMI CAYNNNNRTG 1 cut(s) 215
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 5 cut(s) 5, 9, 57, 84, 225
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 155
StyD4I CCNGG 3 cut(s) 276, 374, 419
TaaI ACNGT 2 cut(s) 188, 440
TaiI ACGT 1 cut(s) 303
TaqI TCGA 2 cut(s) 120, 129
TaqII GACCGA 1 cut(s) 32
TauI GCSGC 3 cut(s) 8, 11, 87
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 1 cut(s) 41
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 111, 381
Tsp45I GTSAC 1 cut(s) 67
TspGWI ACGGA 3 cut(s) 19, 203, 245
TspRI CASTG 1 cut(s) 41
XceI RCATGY 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.