Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Forward (+)

19133540 .. 19134052

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0215700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCCAACCAAAAAGGTTACCTGCCCCAAAAGTAAACCGGTGTTGCTGACCGTGTACGTGGAGAGGCCGAAGAGAAGACCATCTTCATCAACTCACCCTCACCAGCACCATCCTTATATTCAACACACCATCAAGCGGGAGGTTATTCATTACAGGCATGGTGCCGGTGGCCAAGGCTATATTAGTCGGAGAGCGGAGCTGCTTCAGTTCTCTCAACGCCTTCGTTTATCTGCTAGATCAACAGCACCAGCATCCAAACCCTATTACCAAAACCATACCAAGAGTCCAGCTGCCAAGGTACCATATTCCCTACCTTTGTGTTACAATTGCTTTGTAGAGTCTCTTGAGACAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

118

Amino Acids

13.54

Weight (kDa)

10.06

Isoelectric Point (pI)

62.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	29
Acc65I	GGTACC	1 cut(s)	298
AccB1I	GGYRCC	2 cut(s)	161, 298
AccBSI	CCGCTC	1 cut(s)	194
AciI	CCGC	2 cut(s)	136, 194
AcoI	YGGCCR	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	2 cut(s)	56, 300
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	122
AluBI	AGCT	2 cut(s)	199, 290
AluI	AGCT	2 cut(s)	199, 290
Alw26I	GTCTC	2 cut(s)	341, 345
AoxI	GGCC	2 cut(s)	65, 169
ApeKI	GCWGC	2 cut(s)	199, 290
AsiGI	ACCGGT	1 cut(s)	37
Asp718I	GGTACC	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	86, 92
BalI	TGGCCA	1 cut(s)	171
BanI	GGYRCC	2 cut(s)	161, 298
BbsI	GAAGAC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	186, 277
BccI	CCATC	3 cut(s)	88, 117, 137
BcoDI	GTCTC	2 cut(s)	341, 345
BfaI	CTAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	200, 291
BlsI	GCNGC	2 cut(s)	201, 292
BmiI	GGNNCC	2 cut(s)	163, 300
BmsI	GCATC	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	172, 294
BsaWI	WCCGGW	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse118I	RCCGGY	2 cut(s)	37, 164
BseDI	CCNNGG	2 cut(s)	172, 294
BseGI	GGATG	2 cut(s)	109, 251
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	186, 277
BshFI	GGCC	2 cut(s)	67, 171
BshNI	GGYRCC	2 cut(s)	161, 298
BshTI	ACCGGT	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	38, 165
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	341, 345
BsnI	GGCC	2 cut(s)	67, 171
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	2 cut(s)	136, 194
BspANI	GGCC	2 cut(s)	67, 171
BspLI	GGNNCC	2 cut(s)	163, 300
BspMI	ACCTGC	1 cut(s)	29
BspT107I	GGYRCC	2 cut(s)	161, 298
BsrBI	CCGCTC	1 cut(s)	194
BsrFI	RCCGGY	2 cut(s)	37, 164
BssAI	RCCGGY	2 cut(s)	37, 164
BssECI	CCNNGG	2 cut(s)	172, 294
BssMI	GATC	1 cut(s)	236
BssT1I	CCWWGG	2 cut(s)	172, 294
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	58
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	109, 251
BstKTI	GATC	1 cut(s)	239
BstMAI	GTCTC	2 cut(s)	341, 345
BstMBI	GATC	1 cut(s)	236
BstPI	GGTNACC	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	186, 277
BstV2I	GAAGAC	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	67, 171
BtsCI	GGATG	2 cut(s)	109, 251
BveI	ACCTGC	1 cut(s)	29
Cfr10I	RCCGGY	2 cut(s)	37, 164
Csp6I	GTAC	2 cut(s)	55, 299
CspAI	ACCGGT	1 cut(s)	37
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	5 cut(s)	67, 171, 177, 199, 290
CviKI_1	RGCY	5 cut(s)	67, 171, 177, 199, 290
CviQI	GTAC	2 cut(s)	55, 299
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	172, 294
Eco57I	CTGAAG	1 cut(s)	188
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	172, 294
ErhI	CCWWGG	2 cut(s)	172, 294
FaeI	CATG	1 cut(s)	161
FaiI	YATR	5 cut(s)	117, 159, 180, 276, 304
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FatI	CATG	1 cut(s)	157
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	200, 291
FokI	GGATG	2 cut(s)	96, 238
Fsp4HI	GCNGC	2 cut(s)	200, 291
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	2 cut(s)	200, 291
HaeIII	GGCC	2 cut(s)	67, 171
HapII	CCGG	2 cut(s)	38, 165
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	2 cut(s)	283, 338
HpaII	CCGG	2 cut(s)	38, 165
HphI	GGTGA	2 cut(s)	86, 92
Hpy166II	GTNNAC	2 cut(s)	35, 55
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	2 cut(s)	35, 55
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	161
KpnI	GGTACC	1 cut(s)	302
Kzo9I	GATC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	7 cut(s)	34, 51, 116, 139, 178, 261, 300
Lsp1109I	GCAGC	2 cut(s)	186, 277
LweI	GCATC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	16, 320
MalI	GATC	1 cut(s)	238
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	1 cut(s)	236
MboII	GAAGA	3 cut(s)	75, 82, 87
MfeI	CAATTG	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	1 cut(s)	325
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	2 cut(s)	292, 347
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	3 cut(s)	57, 108, 133
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	2 cut(s)	38, 165
MunI	CAATTG	1 cut(s)	325
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	2 cut(s)	163, 300
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	201, 292
PleI	GAGTC	2 cut(s)	291, 346
PpsI	GAGTC	2 cut(s)	291, 346
Ppu21I	YACGTR	1 cut(s)	58
PspEI	GGTNACC	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	163, 300
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	2 cut(s)	56, 300
RsaNI	GTAC	2 cut(s)	55, 299
SatI	GCNGC	2 cut(s)	200, 291
Sau3AI	GATC	1 cut(s)	236
SchI	GAGTC	2 cut(s)	292, 347
SetI	ASST	8 cut(s)	18, 23, 60, 144, 201, 292, 300, 316
SfaNI	GCATC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	2 cut(s)	136, 194
SspMI	CTAG	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	172, 294
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	60
TasI	AATT	1 cut(s)	325
TseI	GCWGC	2 cut(s)	199, 290
TspDTI	ATGAA	2 cut(s)	75, 137
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.