Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Reverse (-)

26809213 .. 26817573

Gene Structure 8361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG271400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATGATCTTGATGATCCACATGCCAAGCACACGGAATGCTTGAAGTCTGGCCCTTTGTCGGACAAAGATGGAATGCTTGAAGTCTGCTCGCTCTATGCGTTACACCATGAAAGACGACAACCGGAGGTACCAAGGAGCCAGATATCATTGACAAGGCTTGGCAGCTCCTTGAACTTTTGTCAACAACTCATGTTCCAGCATCTATGGCAATATAATTATTGGATTGCATGCAAACTTGCCTTATCAAAATTGGGAATCAAGAAGGTGGACTCTGCTCATTATCTGGGATCAAGGAGGAGGAATACCGTGAACGATGGGAATGTCTTCGCCACTCCCTACAGATACTTGCTGAAGTGGTGGAGTGTAATTATTGAGGACCCACATGTACAGCACATGGATATAGGAAATTCTGGGTCAGCGATGATGACCATGGTCATGCCTGAATTCACCTCTTTCTATATGTTCTTTGATGGAGAACAAGCAACTCAGTTGGAAAAAGATTGGAAGTGTGTGGAAGAGTGCTTAAAGAAGCATGGCTTTTCTTGCAAACTGATTGCTGCGGTCGAGTGTTACATGATAGTCTCCAAAACTACAAATGCTGGGGATCCAGATATCACTGACAAGATTTGGGATTTCCTTAAACTTTTGTCAATTGATGTTGAGCCTTCTAAGACAATAGAAGTACTGAATGGCCGTCTGCATTTTGACTTCATCCCGACAAGACTGTTGATCGATAATACCAAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

250

Amino Acids

28.88

Weight (kDa)

6.2

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	130
AciI	CCGC	1 cut(s)	563
AclWI	GGATC	4 cut(s)	11, 298, 602, 615
AcoI	YGGCCR	1 cut(s)	694
AcsI	RAATTY	3 cut(s)	409, 446, 746
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	3 cut(s)	132, 390, 687
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	46, 83, 175
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	589
AlwI	GGATC	4 cut(s)	11, 298, 602, 615
AoxI	GGCC	2 cut(s)	52, 694
ApeKI	GCWGC	2 cut(s)	165, 560
ApoI	RAATTY	3 cut(s)	409, 446, 746
Asp700I	GAANNNNTTC	1 cut(s)	326
Asp718I	GGTACC	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	53, 379
AsuHPI	GGTGA	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	379
BamHI	GGATCC	1 cut(s)	607
BanI	GGYRCC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	177, 547
BccI	CCATC	3 cut(s)	65, 311, 467
BceAI	ACGGC	1 cut(s)	681
BcoDI	GTCTC	1 cut(s)	589
BfmI	CTRYAG	1 cut(s)	340
BisI	GCNGC	2 cut(s)	166, 561
BlsI	GCNGC	2 cut(s)	167, 562
BmcAI	AGTACT	1 cut(s)	687
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	53, 379
BmiI	GGNNCC	4 cut(s)	132, 140, 381, 609
BmsI	GCATC	1 cut(s)	211
BoxI	GACNNNNGTC	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	319
Bsa29I	ATCGAT	1 cut(s)	735
BsaJI	CCNNGG	2 cut(s)	134, 432
BsaWI	WCCGGW	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
BseCI	ATCGAT	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	134, 432
BseGI	GGATG	2 cut(s)	10, 714
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	503
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	177, 547
BseYI	CCCAGC	1 cut(s)	602
Bsh1285I	CGRYCG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	54, 696
BshNI	GGYRCC	1 cut(s)	130
BshVI	ATCGAT	1 cut(s)	735
BsiEI	CGRYCG	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	589
BsmI	GAATGC	2 cut(s)	44, 81
BsnI	GGCC	2 cut(s)	54, 696
Bsp1407I	TGTACA	1 cut(s)	388
Bsp143I	GATC	5 cut(s)	7, 16, 290, 607, 732
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	1 cut(s)	563
BspANI	GGCC	2 cut(s)	54, 696
BspCNI	CTCAG	1 cut(s)	502
BspDI	ATCGAT	1 cut(s)	735
BspLI	GGNNCC	4 cut(s)	132, 140, 381, 609
BspPI	GGATC	4 cut(s)	11, 298, 602, 615
BspT107I	GGYRCC	1 cut(s)	130
BsrGI	TGTACA	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	134, 432
BssMI	GATC	5 cut(s)	7, 16, 290, 607, 732
BssT1I	CCWWGG	2 cut(s)	134, 432
Bst4CI	ACNGT	2 cut(s)	310, 729
Bst6I	CTCTTC	1 cut(s)	513
BstAUI	TGTACA	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	92, 232
BstDEI	CTNAG	2 cut(s)	489, 672
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	10, 714
BstKTI	GATC	5 cut(s)	10, 19, 293, 610, 735
BstMAI	GTCTC	1 cut(s)	589
BstMBI	GATC	5 cut(s)	7, 16, 290, 607, 732
BstMCI	CGRYCG	1 cut(s)	567
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 546
BstNSI	RCATGY	3 cut(s)	26, 234, 389
BstPAI	GACNNNNGTC	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	177, 547
BstV2I	GAAGAC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	735
BsuRI	GGCC	2 cut(s)	54, 696
BsuTUI	ATCGAT	1 cut(s)	735
BtgI	CCRYGG	1 cut(s)	432
BtgZI	GCGATG	1 cut(s)	437
BtsCI	GGATG	2 cut(s)	10, 714
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	2 cut(s)	92, 232
Cfr13I	GGNCC	2 cut(s)	53, 379
ClaI	ATCGAT	1 cut(s)	735
Csp6I	GTAC	3 cut(s)	131, 389, 686
CviJI	RGCY	7 cut(s)	54, 141, 160, 168, 540, 667, 696
CviKI_1	RGCY	7 cut(s)	54, 141, 160, 168, 540, 667, 696
CviQI	GTAC	3 cut(s)	131, 389, 686
DdeI	CTNAG	2 cut(s)	489, 672
DpnI	GATC	5 cut(s)	9, 18, 292, 609, 734
DpnII	GATC	5 cut(s)	7, 16, 290, 607, 732
EaeI	YGGCCR	1 cut(s)	694
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco130I	CCWWGG	2 cut(s)	134, 432
Eco32I	GATATC	2 cut(s)	147, 616
Eco47I	GGWCC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	446
EcoRV	GATATC	2 cut(s)	147, 616
EcoT14I	CCWWGG	2 cut(s)	134, 432
ErhI	CCWWGG	2 cut(s)	134, 432
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
Fnu4HI	GCNGC	2 cut(s)	166, 561
FokI	GGATG	2 cut(s)	17, 701
Fsp4HI	GCNGC	2 cut(s)	166, 561
GluI	GCNGC	2 cut(s)	166, 561
GsaI	CCCAGC	1 cut(s)	606
HaeIII	GGCC	2 cut(s)	54, 696
HapII	CCGG	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	185
HindII	GTYRAC	1 cut(s)	185
HinfI	GANTC	2 cut(s)	258, 272
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	3 cut(s)	185, 271, 313
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	4 cut(s)	11, 262, 611, 718
Hpy8I	GTNNAC	3 cut(s)	185, 271, 313
HpyAV	CCTTC	2 cut(s)	259, 678
HpyCH4III	ACNGT	2 cut(s)	310, 729
HpyCH4V	TGCA	4 cut(s)	230, 234, 549, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 546
HpyF3I	CTNAG	2 cut(s)	489, 672
KpnI	GGTACC	1 cut(s)	134
Kzo9I	GATC	5 cut(s)	7, 16, 290, 607, 732
LmnI	GCTCC	2 cut(s)	138, 173
LpnPI	CCDG	9 cut(s)	36, 138, 155, 212, 272, 399, 456, 588, 624
Lsp1109I	GCAGC	2 cut(s)	177, 547
LweI	GCATC	1 cut(s)	211
MaeIII	GTNAC	2 cut(s)	102, 572
MalI	GATC	5 cut(s)	9, 18, 292, 609, 734
MboI	GATC	5 cut(s)	7, 16, 290, 607, 732
MboII	GAAGA	2 cut(s)	319, 530
MfeI	CAATTG	1 cut(s)	654
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	7 cut(s)	217, 251, 369, 409, 446, 654, 746
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	42, 474
MnlI	CCTC	5 cut(s)	121, 291, 294, 370, 463
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	2 cut(s)	527, 642
MslI	CAYNNNNRTG	1 cut(s)	437
MspI	CCGG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	654
Mva1269I	GAATGC	2 cut(s)	44, 81
MwoI	GCNNNNNNNGC	2 cut(s)	208, 546
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	5 cut(s)	7, 16, 290, 607, 732
NlaIV	GGNNCC	4 cut(s)	132, 140, 381, 609
NspI	RCATGY	3 cut(s)	26, 234, 389
PaeI	GCATGC	1 cut(s)	234
PciI	ACATGT	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PctI	GAATGC	2 cut(s)	44, 81
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	258
PkrI	GCNGC	2 cut(s)	167, 562
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	379
PscI	ACATGT	1 cut(s)	385
PshAI	GACNNNNGTC	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	602
PspN4I	GGNNCC	4 cut(s)	132, 140, 381, 609
PspPI	GGNCC	2 cut(s)	53, 379
PspPPI	RGGWCCY	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	3 cut(s)	132, 390, 687
RsaNI	GTAC	3 cut(s)	131, 389, 686
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	2 cut(s)	527, 642
SatI	GCNGC	2 cut(s)	166, 561
Sau3AI	GATC	5 cut(s)	7, 16, 290, 607, 732
Sau96I	GGNCC	2 cut(s)	53, 379
ScaI	AGTACT	1 cut(s)	687
SchI	GAGTC	1 cut(s)	266
SetI	ASST	4 cut(s)	132, 170, 270, 455
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	437
SphI	GCATGC	1 cut(s)	234
Sse9I	AATT	7 cut(s)	217, 251, 369, 409, 446, 654, 746
SsiI	CCGC	1 cut(s)	563
StyI	CCWWGG	2 cut(s)	134, 432
TaaI	ACNGT	2 cut(s)	310, 729
TaqI	TCGA	2 cut(s)	567, 735
TasI	AATT	7 cut(s)	217, 251, 369, 409, 446, 654, 746
TatI	WGTACW	2 cut(s)	388, 685
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	2 cut(s)	527, 642
Tru9I	TTAA	2 cut(s)	527, 642
TscAI	CASTG	1 cut(s)	625
TseI	GCWGC	2 cut(s)	165, 560
TspDTI	ATGAA	2 cut(s)	126, 703
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	625
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	3 cut(s)	409, 446, 746
XceI	RCATGY	3 cut(s)	26, 234, 389
XmnI	GAANNNNTTC	1 cut(s)	326
ZrmI	AGTACT	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.