Rh7CG097800

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001762
Physical Location & Seq
Forward (+)
7365220 .. 7369447
4228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG097800.1

Sequence Viewer

Length: 384 bp
ATGGTATTGTCAGCAACCAGAGGTACCAAGGAGCCAGATATCATTGACAAGGCTTGGCGGCTCCTTGAACTTTTGTCAACAACTCATGTTCCAGCATCTATGGCAATAGAATTATTGGATTGCGTGCAAACTTGCCTCATCAAAATTGGGAATCAAGAAGGTGGATTCTCCTCATTATATGGGATCAAGGAGGAGGAATACCGTGAAGGATGGGAATGTCTTTGCCACTCCCAACAGATACTTGCTGAAGTGGTGGAGTGTAATGTATTTCTTAACGCAATAGAAGTACTGAATGGCCGTCTGCATTATGACTCCATCCCGACAGGGTATAGATATGGTGGGTTCTGTTCAAAATTTGGGATCACTGAGGTAGCTGCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

127

Amino Acids

14.13

Weight (kDa)

4.86

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 1 cut(s) 58
AclWI GGATC 2 cut(s) 191, 368
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 2 cut(s) 25, 288
AgsI TTSAA 2 cut(s) 68, 351
AluBI AGCT 1 cut(s) 374
AluI AGCT 1 cut(s) 374
AlwI GGATC 2 cut(s) 191, 368
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 353
Asp718I GGTACC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 361
BccI CCATC 2 cut(s) 204, 323
BceAI ACGGC 1 cut(s) 282
BisI GCNGC 2 cut(s) 59, 375
BlsI GCNGC 2 cut(s) 60, 376
BmcAI AGTACT 1 cut(s) 288
BmiI GGNNCC 3 cut(s) 25, 33, 62
BmsI GCATC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 215, 315
BseMII CTCAG 1 cut(s) 357
BseRI GAGGAG 2 cut(s) 160, 206
BseXI GCAGC 1 cut(s) 361
BshFI GGCC 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 23
BsnI GGCC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 183, 360
BspACI CCGC 1 cut(s) 58
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 3 cut(s) 25, 33, 62
BspPI GGATC 2 cut(s) 191, 368
BspT107I GGYRCC 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 183, 360
BssT1I CCWWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 215, 315
BstKTI GATC 2 cut(s) 186, 363
BstMBI GATC 2 cut(s) 183, 360
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 361
BsuRI GGCC 1 cut(s) 297
BtsCI GGATG 2 cut(s) 215, 315
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 24, 287
CviAII CATG 1 cut(s) 86
CviJI RGCY 5 cut(s) 34, 53, 61, 297, 374
CviKI_1 RGCY 5 cut(s) 34, 53, 61, 297, 374
CviQI GTAC 2 cut(s) 24, 287
DdeI CTNAG 1 cut(s) 366
DpnI GATC 2 cut(s) 185, 362
DpnII GATC 2 cut(s) 183, 360
EaeI YGGCCR 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 27
Eco32I GATATC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 267
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 89
FaiI YATR 7 cut(s) 87, 101, 178, 180, 309, 330, 336
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 59, 375
FokI GGATG 2 cut(s) 222, 302
Fsp4HI GCNGC 2 cut(s) 59, 375
GluI GCNGC 2 cut(s) 59, 375
HaeIII GGCC 1 cut(s) 297
Hin1II CATG 1 cut(s) 89
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 3 cut(s) 151, 165, 311
Hpy166II GTNNAC 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 155, 319
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 152, 200
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 127, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 366
Hsp92II CATG 1 cut(s) 89
KpnI GGTACC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 183, 360
LmnI GCTCC 2 cut(s) 31, 66
LpnPI CCDG 4 cut(s) 31, 48, 105, 309
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 1 cut(s) 104
MalI GATC 2 cut(s) 185, 362
MboI GATC 2 cut(s) 183, 360
MluCI AATT 3 cut(s) 110, 144, 353
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 6 cut(s) 14, 146, 181, 184, 187, 361
MseI TTAA 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 2 cut(s) 183, 360
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 3 cut(s) 25, 33, 62
PfeI GAWTC 2 cut(s) 151, 165
PkrI GCNGC 2 cut(s) 60, 376
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PspN4I GGNNCC 3 cut(s) 25, 33, 62
RsaI GTAC 2 cut(s) 25, 288
RsaNI GTAC 2 cut(s) 24, 287
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 2 cut(s) 59, 375
Sau3AI GATC 2 cut(s) 183, 360
ScaI AGTACT 1 cut(s) 288
SchI GAGTC 1 cut(s) 305
SetI ASST 4 cut(s) 25, 163, 372, 376
SfaNI GCATC 1 cut(s) 104
Sse9I AATT 3 cut(s) 110, 144, 353
SsiI CCGC 1 cut(s) 58
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 203
TasI AATT 3 cut(s) 110, 144, 353
TatI WGTACW 1 cut(s) 286
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 2 cut(s) 151, 165
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 370
TseI GCWGC 1 cut(s) 374
TspRI CASTG 1 cut(s) 370
XapI RAATTY 1 cut(s) 353
ZrmI AGTACT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.