Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001762

Physical Location & Seq

Genomic Coordinates Forward (+)

23203432 .. 23208425

Gene Structure 4994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAGCCTTAATCAGTTATGGCCTCTGCTACCTAGCTCCTCAATGAAGAGACCCAAGATCGTAACTTCTTCATATGCTAAACTCACTTTTCTGCTTCTCGGACATCTACTTTGTGTGCAGGGGGAATATCTTAGACGATGGGAATGCCTCTTCTACTCCCTAAAGGAGAACACTTTTACTGCTGTGACTGCTGTGGAGAATACATTTGAAAGAATTTTATGGCTCAAGTCAGTTGTGGGAGACTGCATCACCAAAAATTTGTGTCCTGCAACCTCTATCAGGAAGTTTGTAAAGGAATTTGGAATGCATCAATCGACGGATGATCTTGAGGATCCACATGCCAAGCACATGGAGATGGTGAGGTCTGCCCCTTTTTTTCTCAGGGATAGCATGCCTGAAGAGAAGGATTCCCTGGCATTCACAACAACGAGATGTACTAAGGAGCCAGATGCCCAGATATCATTGACTAGGCTCTGCAGCTACTTGAACTTTTGTCAACAACTCATGTTCCAGTATCTCTGTTTGGATGTGGTGGGATTAATTAGCAATGCTTTAGATGTGCTGAAGCTCACTTTTTTGCTATCTGATCTCTTGTATTGGGTGCAGGAGGAATACCTTATACGATGGGAATGTCTTCGCCACTCCCTACAGTATTACACTGTTGCTGCTGTGGGGAATACTTCACTAGAATTGTTCAAGCAGTCAGTGGTAAACTGCATTCTTCATAATGTGTGTGCTGGGACTGCCTGCATGGATTATAATTCTGCATCACGAGGGCTGGAAAATATTGAAGATCCACACGTCAAGCACATGGAGATGGAAAAATCGGGGTCGTCGTTGCACATGCTTGAAGTCAGCTCCTTCTGTACATTCTTTTCGCGACTACAAGGAAATGGCAAGAGTCATGAACTGTTGTGTCAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

308

Amino Acids

35.33

Weight (kDa)

6.07

Isoelectric Point (pI)

57.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09741 FvH4_5g09770 FvH4_5g09780 FvH4_5g31341
rosa_chinensis	RchiOBHm_Chr3g0481091 RchiOBHm_Chr7g0188481 RchiOBHm_Chr7g0223281
rosa_laevigata	RLG00000001991 RLG00000004692 RLG00000023421
rosa_multiflora	Rmu_co8285797.1_g000001 Rmu_sc0001551.1_g000022 Rmu_sc0001576.1_g000004 Rmu_sc0005124.1_g000010 Rmu_sc0016427.1_g000002 Rmu_sc0021207.1_g000004 Rmu_sc0021207.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235960 Rroxscaffold_3G00266380 Rroxscaffold_6G00400650
rosa_rugosa	Rorug03G0190200 Rorug03G0190300 Rorug03G0190400 Rorug06G0490800 Rorug07G0213900 Rorug07G0215700
rosa_samantha	Rh3AG240500 Rh3BG276100 Rh3BG276200 Rh3CG271400 Rh3CG271500 Rh3DG267600 Rh5CG142200 Rh7AG359300 Rh7AG359400 Rh7AG359500 Rh7BG347300 Rh7CG097800 Rh7CG100000 Rh7CG377800 Rh7CG377900 Rh7DG097300 Rh7DG354800
rosa_wichuraiana	Rw0G009410 Rw3G021470 Rw7G008240 Rw7G030530 Rw7G030540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	759
AccII	CGCG	1 cut(s)	880
AclWI	GGATC	3 cut(s)	326, 339, 788
AcsI	RAATTY	3 cut(s)	213, 256, 296
AcuI	CTGAAG	2 cut(s)	417, 584
AfaI	GTAC	2 cut(s)	436, 868
AfiI	CCNNNNNNNGG	1 cut(s)	279
AflIII	ACRYGT	1 cut(s)	799
AgsI	TTSAA	5 cut(s)	209, 487, 697, 791, 851
AjiI	CACGTC	1 cut(s)	802
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	4 cut(s)	36, 480, 568, 858
AluI	AGCT	4 cut(s)	36, 480, 568, 858
Alw26I	GTCTC	2 cut(s)	43, 234
AlwI	GGATC	3 cut(s)	326, 339, 788
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	477, 665
ApoI	RAATTY	3 cut(s)	213, 256, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AseI	ATTAAT	1 cut(s)	539
Asp700I	GAANNNNTTC	1 cut(s)	633
AsuHPI	GGTGA	2 cut(s)	241, 370
BamHI	GGATCC	1 cut(s)	331
BauI	CACGAG	1 cut(s)	771
BbsI	GAAGAC	1 cut(s)	626
BbvI	GCAGC	2 cut(s)	489, 652
BccI	CCATC	4 cut(s)	132, 349, 618, 811
BcgI	CGANNNNNNTGC	2 cut(s)	126, 160
BciT130I	CCWGG	1 cut(s)	413
BcoDI	GTCTC	2 cut(s)	43, 234
BfaI	CTAG	4 cut(s)	33, 468, 686, 925
BfmI	CTRYAG	2 cut(s)	475, 647
BisI	GCNGC	2 cut(s)	478, 666
BlsI	GCNGC	2 cut(s)	479, 667
Bme1390I	CCNGG	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	802
BmiI	GGNNCC	2 cut(s)	333, 444
BmrFI	CCNGG	1 cut(s)	413
BmsI	GCATC	4 cut(s)	255, 316, 439, 776
BpiI	GAAGAC	1 cut(s)	626
BpuEI	CTTGAG	2 cut(s)	209, 347
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	511
Bse3DI	GCAATG	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	2 cut(s)	325, 532
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	511
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	489, 652
BseYI	CCCAGC	1 cut(s)	737
BsgI	GTGCAG	2 cut(s)	137, 623
Bsh1236I	CGCG	1 cut(s)	880
BshFI	GGCC	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	2 cut(s)	43, 234
BsmFI	GGGAC	1 cut(s)	754
BsmI	GAATGC	4 cut(s)	149, 309, 416, 717
BsnI	GGCC	1 cut(s)	22
Bso31I	GGTCTC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	866
Bsp143I	GATC	5 cut(s)	57, 322, 331, 586, 793
Bsp68I	TCGCGA	1 cut(s)	880
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	880
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	2 cut(s)	333, 444
BspMAI	CTGCAG	1 cut(s)	479
BspPI	GGATC	3 cut(s)	326, 339, 788
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	553
BsrGI	TGTACA	1 cut(s)	866
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	5 cut(s)	57, 322, 331, 586, 793
BssSI	CACGAG	1 cut(s)	771
Bst2BI	CACGAG	1 cut(s)	771
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	3 cut(s)	651, 661, 912
Bst6I	CTCTTC	3 cut(s)	41, 155, 393
BstAUI	TGTACA	1 cut(s)	866
BstC8I	GCNNGC	2 cut(s)	392, 748
BstDEI	CTNAG	3 cut(s)	131, 380, 438
BstENI	CCTNNNNNAGG	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	325, 532
BstFNI	CGCG	1 cut(s)	880
BstKTI	GATC	5 cut(s)	60, 325, 334, 589, 796
BstMAI	GTCTC	2 cut(s)	43, 234
BstMBI	GATC	5 cut(s)	57, 322, 331, 586, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 743
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	3 cut(s)	341, 394, 847
BstSCI	CCNGG	1 cut(s)	411
BstSFI	CTRYAG	2 cut(s)	475, 647
BstUI	CGCG	1 cut(s)	880
BstV1I	GCAGC	2 cut(s)	489, 652
BstV2I	GAAGAC	1 cut(s)	626
BstX2I	RGATCY	2 cut(s)	331, 793
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstYI	RGATCY	2 cut(s)	331, 793
BsuRI	GGCC	1 cut(s)	22
BtrI	CACGTC	1 cut(s)	802
BtsCI	GGATG	2 cut(s)	325, 532
BtsIMutI	CAGTG	2 cut(s)	657, 711
BtuMI	TCGCGA	1 cut(s)	880
Cac8I	GCNNGC	2 cut(s)	392, 748
CciI	TCATGA	1 cut(s)	904
Csp6I	GTAC	2 cut(s)	435, 867
CviAII	CATG	8 cut(s)	338, 349, 391, 505, 751, 811, 844, 905
CviQI	GTAC	2 cut(s)	435, 867
DdeI	CTNAG	3 cut(s)	131, 380, 438
DpnI	GATC	5 cut(s)	59, 324, 333, 588, 795
DpnII	GATC	5 cut(s)	57, 322, 331, 586, 793
Eam1104I	CTCTTC	3 cut(s)	41, 155, 393
EarI	CTCTTC	3 cut(s)	41, 155, 393
Eco31I	GGTCTC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	459
Eco57I	CTGAAG	2 cut(s)	417, 584
EcoNI	CCTNNNNNAGG	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	411
EcoRV	GATATC	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	309
FaeI	CATG	8 cut(s)	341, 352, 394, 508, 754, 814, 847, 908
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	8 cut(s)	337, 348, 390, 504, 750, 810, 843, 904
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	478, 666
FokI	GGATG	2 cut(s)	332, 539
Fsp4HI	GCNGC	2 cut(s)	478, 666
FspBI	CTAG	4 cut(s)	33, 468, 686, 925
GluI	GCNGC	2 cut(s)	478, 666
GsaI	CCCAGC	1 cut(s)	741
HaeIII	GGCC	1 cut(s)	22
Hin1II	CATG	8 cut(s)	341, 352, 394, 508, 754, 814, 847, 908
HincII	GTYRAC	1 cut(s)	497
HindII	GTYRAC	1 cut(s)	497
HinfI	GANTC	2 cut(s)	407, 901
HphI	GGTGA	2 cut(s)	241, 370
Hpy166II	GTNNAC	2 cut(s)	497, 712
Hpy188I	TCNGA	2 cut(s)	101, 586
Hpy188III	TCNNGA	6 cut(s)	280, 326, 771, 879, 905, 920
Hpy8I	GTNNAC	2 cut(s)	497, 712
Hpy99I	CGWCG	2 cut(s)	319, 838
HpyAV	CCTTC	2 cut(s)	397, 871
HpyCH4III	ACNGT	3 cut(s)	651, 661, 912
HpyCH4IV	ACGT	1 cut(s)	801
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 743
HpyF3I	CTNAG	3 cut(s)	131, 380, 438
HpySE526I	ACGT	1 cut(s)	801
Hsp92II	CATG	8 cut(s)	341, 352, 394, 508, 754, 814, 847, 908
Kzo9I	GATC	5 cut(s)	57, 322, 331, 586, 793
LmnI	GCTCC	3 cut(s)	41, 442, 863
Lsp1109I	GCAGC	2 cut(s)	489, 652
LweI	GCATC	4 cut(s)	255, 316, 439, 776
MaeI	CTAG	4 cut(s)	33, 468, 686, 925
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	2 cut(s)	61, 184
MalI	GATC	5 cut(s)	59, 324, 333, 588, 795
MboI	GATC	5 cut(s)	57, 322, 331, 586, 793
MboII	GAAGA	7 cut(s)	58, 60, 142, 410, 626, 713, 803
MflI	RGATCY	2 cut(s)	331, 793
MluCI	AATT	6 cut(s)	213, 256, 296, 540, 689, 760
MlyI	GAGTC	1 cut(s)	910
MnlI	CCTC	8 cut(s)	33, 49, 158, 283, 322, 354, 601, 767
Mph1103I	ATGCAT	1 cut(s)	309
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	2 cut(s)	9, 539
MslI	CAYNNNNRTG	2 cut(s)	353, 815
MspR9I	CCNGG	1 cut(s)	413
Mva1269I	GAATGC	4 cut(s)	149, 309, 416, 717
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	880
MwoI	GCNNNNNNNGC	2 cut(s)	188, 743
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	5 cut(s)	57, 322, 331, 586, 793
NlaIII	CATG	8 cut(s)	341, 352, 394, 508, 754, 814, 847, 908
NlaIV	GGNNCC	2 cut(s)	333, 444
NmuCI	GTSAC	1 cut(s)	184
NruI	TCGCGA	1 cut(s)	880
NsiI	ATGCAT	1 cut(s)	309
NspI	RCATGY	3 cut(s)	341, 394, 847
PaeI	GCATGC	1 cut(s)	394
PagI	TCATGA	1 cut(s)	904
PcsI	WCGNNNNNNNCGW	1 cut(s)	833
PctI	GAATGC	4 cut(s)	149, 309, 416, 717
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	2 cut(s)	479, 667
PleI	GAGTC	1 cut(s)	909
PpsI	GAGTC	1 cut(s)	909
PshBI	ATTAAT	1 cut(s)	539
PsiI	TTATAA	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	737
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	333, 444
PstI	CTGCAG	1 cut(s)	479
PsuI	RGATCY	2 cut(s)	331, 793
RruI	TCGCGA	1 cut(s)	880
RsaI	GTAC	2 cut(s)	436, 868
RsaNI	GTAC	2 cut(s)	435, 867
RseI	CAYNNNNRTG	2 cut(s)	353, 815
SaqAI	TTAA	2 cut(s)	9, 539
SatI	GCNGC	2 cut(s)	478, 666
Sau3AI	GATC	5 cut(s)	57, 322, 331, 586, 793
SchI	GAGTC	1 cut(s)	910
ScrFI	CCNGG	1 cut(s)	413
SetI	ASST	9 cut(s)	34, 38, 275, 365, 482, 570, 618, 804, 860
SfaNI	GCATC	4 cut(s)	255, 316, 439, 776
SfcI	CTRYAG	2 cut(s)	475, 647
SmiMI	CAYNNNNRTG	2 cut(s)	353, 815
SmlI	CTYRAG	2 cut(s)	224, 326
SmoI	CTYRAG	2 cut(s)	224, 326
SphI	GCATGC	1 cut(s)	394
Sse9I	AATT	6 cut(s)	213, 256, 296, 540, 689, 760
SspI	AATATT	1 cut(s)	787
SspMI	CTAG	4 cut(s)	33, 468, 686, 925
StyD4I	CCNGG	1 cut(s)	411
TaaI	ACNGT	3 cut(s)	651, 661, 912
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	1 cut(s)	314
TasI	AATT	6 cut(s)	213, 256, 296, 540, 689, 760
TatI	WGTACW	2 cut(s)	434, 866
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	9, 539
Tru9I	TTAA	2 cut(s)	9, 539
TscAI	CASTG	2 cut(s)	664, 711
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	477, 665
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	4 cut(s)	59, 60, 713, 921
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	2 cut(s)	664, 711
VspI	ATTAAT	1 cut(s)	539
XagI	CCTNNNNNAGG	1 cut(s)	277
XapI	RAATTY	3 cut(s)	213, 256, 296
XceI	RCATGY	3 cut(s)	341, 394, 847
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	4 cut(s)	33, 468, 686, 925
Zsp2I	ATGCAT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.